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Lsi04G016700 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G016700
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein RADIALIS-like 3
Genome locationchr04:24122630..24123231
RNA-Seq ExpressionLsi04G016700
SyntenyLsi04G016700
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN60114.2 hypothetical protein Csa_000871 [Cucumis sativus]1.8e-4295.79Show/hide
Query:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRN
        MASSSVTST  FYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRN
Subjt:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRN

XP_008466554.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]8.7e-4295.74Show/hide
Query:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
        MASSSVTST  FYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Subjt:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR

XP_022155868.1 protein RADIALIS-like 4 [Momordica charantia]4.6e-3591.95Show/hide
Query:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGR
        MASSSVTS R FYSSWTK+ENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELL RDV+KIEAGQVQIPLYKN G NGR
Subjt:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGR

XP_022936283.1 protein RADIALIS-like 3 [Cucurbita moschata]1.6e-4089Show/hide
Query:  MASSSVTS-TRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNVFTR
        MASSSVTS  R FYSSWTKKENKKFEEALA+YDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+  +FT+
Subjt:  MASSSVTS-TRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNVFTR

XP_022940511.1 protein RADIALIS-like 3 [Cucurbita moschata]3.7e-3287.21Show/hide
Query:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNG
        MASSS T+   FYSSWTK+ENKKFEEALAFYDQDTPDRFE VARAVGGGKTAEE RRLYELLVRDV KIEAGQVQIPLYKN G NG
Subjt:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNG

TrEMBL top hitse value%identityAlignment
A0A0A0LGL4 Uncharacterized protein4.2e-4295.74Show/hide
Query:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
        MASSSVTST  FYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Subjt:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR

A0A1S3CRN8 protein RADIALIS-like 44.2e-4295.74Show/hide
Query:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
        MASSSVTST  FYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Subjt:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR

A0A5A7TE80 Protein RADIALIS-like 34.2e-4295.74Show/hide
Query:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
        MASSSVTST  FYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Subjt:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR

A0A6J1DP29 protein RADIALIS-like 42.2e-3591.95Show/hide
Query:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGR
        MASSSVTS R FYSSWTK+ENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELL RDV+KIEAGQVQIPLYKN G NGR
Subjt:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGR

A0A6J1FCU5 protein RADIALIS-like 37.9e-4189Show/hide
Query:  MASSSVTS-TRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNVFTR
        MASSSVTS  R FYSSWTKKENKKFEEALA+YDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+  +FT+
Subjt:  MASSSVTS-TRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNVFTR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.6e-1753.12Show/hide
Query:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAG--CNGRGYADQQR
        MASSS++S  +   SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R YELLV+D+  IE G V  P Y+ +G   NGR   +++R
Subjt:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAG--CNGRGYADQQR

Q1G3C4 Protein RADIALIS-like 41.1e-1556.79Show/hide
Query:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKN
        MASSS+++     SSWT +E+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R YELL+RDV  IE+G+   P Y+N
Subjt:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKN

Q6NNN0 Protein RADIALIS-like 32.4e-1861.18Show/hide
Query:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCN
        MAS+S++S+    +SWT+KENK FE ALA YDQDTPDR+  VARAV GGK+AEE RR YELL+RDV  IE+G+   P Y++ G N
Subjt:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCN

Q8GW75 Protein RADIALIS-like 58.5e-1652.69Show/hide
Query:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK--NAGCNGRGYAD
        MASSS++S+    SSWT K+NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y++LV D+  IE   V +P YK  + G   RG  D
Subjt:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK--NAGCNGRGYAD

Q9SIJ5 Protein RADIALIS-like 23.5e-1759.55Show/hide
Query:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK-NAGCNGRG
        MAS S++S  +   SWT K+NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y+LLVRD+  IE G V  P YK   G + RG
Subjt:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK-NAGCNGRG

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 56.1e-1752.69Show/hide
Query:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK--NAGCNGRGYAD
        MASSS++S+    SSWT K+NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y++LV D+  IE   V +P YK  + G   RG  D
Subjt:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK--NAGCNGRGYAD

AT1G75250.1 RAD-like 62.7e-1744.23Show/hide
Query:  TSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNVFTRLLTFQFN
        +++R+  S WT  +NK FE ALA YD+DTPDR+  VA+AV GGKT EE +R Y++LV D+  IE G+V +P YK    N R   D      T+ L    +
Subjt:  TSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNVFTRLLTFQFN

Query:  DSYD
          +D
Subjt:  DSYD

AT2G18328.1 RAD-like 47.9e-1756.79Show/hide
Query:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKN
        MASSS+++     SSWT +E+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R YELL+RDV  IE+G+   P Y+N
Subjt:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKN

AT2G21650.1 Homeodomain-like superfamily protein2.5e-1859.55Show/hide
Query:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK-NAGCNGRG
        MAS S++S  +   SWT K+NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y+LLVRD+  IE G V  P YK   G + RG
Subjt:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK-NAGCNGRG

AT4G39250.1 RAD-like 11.9e-1853.12Show/hide
Query:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAG--CNGRGYADQQR
        MASSS++S  +   SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R YELLV+D+  IE G V  P Y+ +G   NGR   +++R
Subjt:  MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAG--CNGRGYADQQR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCAAGCTCTGTCACGTCGACACGTGCCTTTTATTCATCCTGGACCAAAAAGGAAAACAAGAAATTTGAGGAGGCATTGGCCTTCTATGACCAGGACACACCAGA
CCGTTTTGAGAAAGTAGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAAGAAGCAAGAAGGCTCTATGAGTTACTAGTGCGAGATGTCAGAAAAATAGAAGCTGGTCAAG
TCCAAATACCCCTCTACAAGAACGCTGGATGTAATGGCAGAGGGTATGCTGACCAGCAGAGAAATGTATTCACCAGACTACTAACTTTTCAATTCAACGATTCATACGAC
ATAGCACTTAGAACTTCAATTTCCGTTGAAGTAGATCAAGCAACAAATTTGAAAATTACCTCAAAATCAAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCAAGCTCTGTCACGTCGACACGTGCCTTTTATTCATCCTGGACCAAAAAGGAAAACAAGAAATTTGAGGAGGCATTGGCCTTCTATGACCAGGACACACCAGA
CCGTTTTGAGAAAGTAGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAAGAAGCAAGAAGGCTCTATGAGTTACTAGTGCGAGATGTCAGAAAAATAGAAGCTGGTCAAG
TCCAAATACCCCTCTACAAGAACGCTGGATGTAATGGCAGAGGGTATGCTGACCAGCAGAGAAATGTATTCACCAGACTACTAACTTTTCAATTCAACGATTCATACGAC
ATAGCACTTAGAACTTCAATTTCCGTTGAAGTAGATCAAGCAACAAATTTGAAAATTACCTCAAAATCAAGTTAA
Protein sequenceShow/hide protein sequence
MASSSVTSTRAFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNVFTRLLTFQFNDSYD
IALRTSISVEVDQATNLKITSKSS