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Lsi04G016920 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G016920
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description50S ribosomal protein L31
Genome locationchr04:24309125..24310065
RNA-Seq ExpressionLsi04G016920
SyntenyLsi04G016920
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002150 - Ribosomal protein L31
IPR034704 - L28p-like
IPR042105 - Ribosomal protein L31 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041569.1 50S ribosomal protein L31 [Cucumis melo var. makuwa]9.6e-6594.07Show/hide
Query:  MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
        MALNLTNSFLQLQRPISPAVAPPK+KE  ARSHRPVVTCRKKD+HPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
Subjt:  MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF

Query:  RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK
        RKKFGELSQLMEIPVLKGEI+LP+KRKS  KGKKK
Subjt:  RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK

KAG6608549.1 50S ribosomal protein L31, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]9.6e-6594.07Show/hide
Query:  MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
        MALNLTNSF  LQRP SPA+APPKNKE  AR +RPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
Subjt:  MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF

Query:  RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK
        RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK
Subjt:  RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK

XP_008466538.1 PREDICTED: 50S ribosomal protein L31, chloroplastic [Cucumis melo]9.6e-6594.07Show/hide
Query:  MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
        MALNLTNSFLQLQRPISPAVAPPK+KE  ARSHRPVVTCRKKD+HPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
Subjt:  MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF

Query:  RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK
        RKKFGELSQLMEIPVLKGEI+LP+KRKS  KGKKK
Subjt:  RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK

XP_022936208.1 50S ribosomal protein L31, chloroplastic-like [Cucurbita moschata]2.1e-6494.07Show/hide
Query:  MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
        MALNLTNSF  LQRPISP VAPPK KEF ARSHR VVTCRKKD+HPQF+EDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
Subjt:  MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF

Query:  RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK
        RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK
Subjt:  RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK

XP_023523361.1 50S ribosomal protein L31, chloroplastic-like [Cucurbita pepo subsp. pepo]9.6e-6594.07Show/hide
Query:  MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
        MALNLTNSF  LQRP SPA+APPKNKE  AR +RPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
Subjt:  MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF

Query:  RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK
        RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK
Subjt:  RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK

TrEMBL top hitse value%identityAlignment
A0A1S3CRJ2 50S ribosomal protein L31, chloroplastic4.7e-6594.07Show/hide
Query:  MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
        MALNLTNSFLQLQRPISPAVAPPK+KE  ARSHRPVVTCRKKD+HPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
Subjt:  MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF

Query:  RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK
        RKKFGELSQLMEIPVLKGEI+LP+KRKS  KGKKK
Subjt:  RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK

A0A5A7TJN6 50S ribosomal protein L31, chloroplastic4.7e-6594.07Show/hide
Query:  MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
        MALNLTNSFLQLQRPISPAVAPPK+KE  ARSHRPVVTCRKKD+HPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
Subjt:  MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF

Query:  RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK
        RKKFGELSQLMEIPVLKGEI+LP+KRKS  KGKKK
Subjt:  RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK

A0A6J1FCM8 50S ribosomal protein L311.0e-6494.07Show/hide
Query:  MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
        MALNLTNSF  LQRPISP VAPPK KEF ARSHR VVTCRKKD+HPQF+EDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
Subjt:  MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF

Query:  RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK
        RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK
Subjt:  RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK

A0A6J1IKY2 50S ribosomal protein L311.4e-6493.33Show/hide
Query:  MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
        MALNLTNSF  LQRPISP VAPPK KEF ARSHR VVTCRKKD+HPQF+EDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
Subjt:  MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF

Query:  RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK
        RKKFGELSQLMEIPVLKGEI+LPTKRKSGGKGKKK
Subjt:  RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK

E5GCI4 50S ribosomal protein L31, chloroplastic4.7e-6594.07Show/hide
Query:  MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
        MALNLTNSFLQLQRPISPAVAPPK+KE  ARSHRPVVTCRKKD+HPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
Subjt:  MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF

Query:  RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK
        RKKFGELSQLMEIPVLKGEI+LP+KRKS  KGKKK
Subjt:  RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK

SwissProt top hitse value%identityAlignment
P82249 50S ribosomal protein L31, chloroplastic5.7e-4466.67Show/hide
Query:  MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF
        M L L+N FL         +  PK     + + RP  +CRK DIHP+F EDAKVYCNGELVMTTGGTQK+Y+V+VWSGNHPFYLG+RSALL+DADQVEKF
Subjt:  MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKF

Query:  RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK
        RKK+GEL+Q+MEIPVLKGEI+LP K+KS  K KKK
Subjt:  RKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK

Q31L35 50S ribosomal protein L312.0e-1760.29Show/hide
Query:  KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDAD-QVEKFRKKFGEL
        K DIHPQ+Y +AKVYCNGE VMT G TQ E  VDVWSGNHPFY G++   ++D + +VE+F +K+G L
Subjt:  KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDAD-QVEKFRKKFGEL

Q5N0T7 50S ribosomal protein L312.0e-1760.29Show/hide
Query:  KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDAD-QVEKFRKKFGEL
        K DIHPQ+Y +AKVYCNGE VMT G TQ E  VDVWSGNHPFY G++   ++D + +VE+F +K+G L
Subjt:  KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDAD-QVEKFRKKFGEL

Q7V9Y9 50S ribosomal protein L312.0e-1760Show/hide
Query:  KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFG
        KKDIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNHPF+ G++  L  +  +V++F +K+G
Subjt:  KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFG

Q9FWS4 50S ribosomal protein L31, chloroplastic1.4e-4764.58Show/hide
Query:  MALNLTNSF---------LQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALL
        MA++L NSF         LQL++P+  AV   K    R+ +    +TCRKK++HP+F+EDAKVYCNGELVMTTGGT+KEY VDVWSGNHPFYLG+RSAL+
Subjt:  MALNLTNSF---------LQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALL

Query:  VDADQVEKFRKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK
        VDADQVEKFRK+F  LS++MEIPVLKGEI++PTK+  G KGKKK
Subjt:  VDADQVEKFRKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK

Arabidopsis top hitse value%identityAlignment
AT1G75350.1 Ribosomal protein L311.0e-4864.58Show/hide
Query:  MALNLTNSF---------LQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALL
        MA++L NSF         LQL++P+  AV   K    R+ +    +TCRKK++HP+F+EDAKVYCNGELVMTTGGT+KEY VDVWSGNHPFYLG+RSAL+
Subjt:  MALNLTNSF---------LQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALL

Query:  VDADQVEKFRKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK
        VDADQVEKFRK+F  LS++MEIPVLKGEI++PTK+  G KGKKK
Subjt:  VDADQVEKFRKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCTGAACCTAACAAATTCCTTCCTTCAACTTCAACGTCCTATTTCCCCGGCCGTCGCACCGCCGAAGAACAAGGAATTTAGAGCCAGAAGTCACCGGCCGGTTGT
GACCTGCCGGAAAAAGGATATCCACCCCCAATTTTACGAGGATGCTAAGGTTTATTGCAACGGAGAACTGGTGATGACGACCGGTGGGACCCAGAAAGAGTATTCAGTGG
ATGTGTGGTCGGGAAATCACCCGTTCTATTTGGGCAGCCGATCCGCTCTGCTCGTCGACGCCGATCAGGTCGAGAAATTCCGCAAGAAATTCGGAGAGCTTTCGCAGTTG
ATGGAGATTCCTGTCCTTAAGGGCGAAATCGTTCTGCCCACAAAGCGCAAATCCGGCGGCAAAGGGAAGAAGAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATAGCTCAAGGCCCAACAGTTACAGGCCCAAAAAAAGGAGTGAGTGAGTGGACACGCGACAAGGCCTTGAAGAAGAAGAACTCATCTCCCTCTTATCCTTTACTCACCGC
AAGCAAACGCAGCAATGGCGCTGAACCTAACAAATTCCTTCCTTCAACTTCAACGTCCTATTTCCCCGGCCGTCGCACCGCCGAAGAACAAGGAATTTAGAGCCAGAAGT
CACCGGCCGGTTGTGACCTGCCGGAAAAAGGATATCCACCCCCAATTTTACGAGGATGCTAAGGTTTATTGCAACGGAGAACTGGTGATGACGACCGGTGGGACCCAGAA
AGAGTATTCAGTGGATGTGTGGTCGGGAAATCACCCGTTCTATTTGGGCAGCCGATCCGCTCTGCTCGTCGACGCCGATCAGGTCGAGAAATTCCGCAAGAAATTCGGAG
AGCTTTCGCAGTTGATGGAGATTCCTGTCCTTAAGGGCGAAATCGTTCTGCCCACAAAGCGCAAATCCGGCGGCAAAGGGAAGAAGAAGTAGAAGATTGTGAAGAGTTCA
ATTGGCCTGGTAATCAGTTAAAATCCAAATGCATATTGAGATTTTTGGTTCTTTCTATTGCATTATATATCTCTGTAATCTAGCAGAATCGATACTAATTTGTCTGAGCC
AAACAATTTGTTTCTGTTAGTTGCCTTGCTACTACTGATTGCTCAAAATGTTGATGAATGCACTATCGATAAGTGTTTGGTAATTCATGAAGGAAAAGAAAATTTGAGAA
ATTAGAATAGGAATTGATGGCAACTGACGATACAAATTCTTCAAGTTTTTGGGCAGTTTATGGTACTCTTGAATTTCTGCAGGTG
Protein sequenceShow/hide protein sequence
MALNLTNSFLQLQRPISPAVAPPKNKEFRARSHRPVVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQL
MEIPVLKGEIVLPTKRKSGGKGKKK