CuGenDBv2

Gene ID	Lsi04G017270
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Nucleic acid-binding, OB-fold containing protein
Genome location	chr04:24591972..24595784
RNA-Seq Expression	Lsi04G017270
Synteny	Lsi04G017270
Gene Ontology terms	GO:0006352 - DNA-templated transcription, initiation (biological process) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR036898 - RNA polymerase Rpb7-like, N-terminal domain superfamily IPR045113 - RNA polymerase Rpb7-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008466499.1 PREDICTED: uncharacterized protein LOC103503892 isoform X1 [Cucumis melo]

2.3e-93

67.09

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Query:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV
        MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYF VTI AKLLLFSPKPNML              
Subjt:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV

Query:  SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSVTFKW
                         L+GKVVKLRQE+IHVIVLGFASAVIT EDIRDEFKH+TKHGEEMFV+RAHKHHVIKVGTMI+FLVK  D              
Subjt:  SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSVTFKW

Query:  KVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMRENE--VMGQDSIATDANAVILNNDH
                                             EILHISGSLVPSHTGSIHWLEKNSVEGSVS +SKKKMRENE  VM QD++ TD NAVIL NDH
Subjt:  KVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMRENE--VMGQDSIATDANAVILNNDH

Query:  QLKTKKQKTTRIS
        Q KTKKQKTTRIS
Subjt:  QLKTKKQKTTRIS

XP_038889707.1 uncharacterized protein LOC120079556 isoform X1 [Benincasa hispida]

1.1e-92

64.95

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Query:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV
        MEGLKVSDAN+VVYVHPSKSKKVSQAVLRELG MLLKFDEKFEGVLLAYEA IIDKNAKILSGVHPYF VTI AKLLLFSPKPNML              
Subjt:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV

Query:  SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSVTFKW
                         L+GKVVKLRQE+IHVIVLGF+S VITDEDIRDEFKH+TKHGEEMFV+R HKHHVIKVGTMI+FLVK  D              
Subjt:  SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSVTFKW

Query:  KVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMRENEVMGQDSIATDANAVILNNDHQL
                                             EILHISGSLVPSHTGSIHWLEKNSVEGSV+N+SKKK RENE  G+ S++TDANA+ILNNDHQ 
Subjt:  KVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMRENEVMGQDSIATDANAVILNNDHQL

Query:  KTKKQKTTRIS
        KTK+QKTTRIS
Subjt:  KTKKQKTTRIS

XP_038898975.1 uncharacterized protein LOC120086413 isoform X1 [Benincasa hispida]

2.1e-94

65.3

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Query:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV
        M+GLKVSDANMVVYVHPSKSKKVSQAVLR LGAMLLKFDEKFEGVLLAYEAKIIDK AKILSGVHPYF VTI AKLLLFSPKPNML+    M++ + +G+
Subjt:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV

Query:  ----SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSV
             F          +  +  +GKVVKLRQE+IHVIVLGFASAVIT+EDIRDEFKH+TKHGEEMFV+RAHKHHVIKVGTMI+FLVK  D          
Subjt:  ----SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSV

Query:  TFKWKVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMREN--EVMGQDSIATDANAVIL
                                                 EILHI+GSLVPSHTGSIHWLEKNSVEG+V+++SKKKMREN  EVM QDS+AT+ NA+IL
Subjt:  TFKWKVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMREN--EVMGQDSIATDANAVIL

Query:  NNDHQLKTKKQKTTRIS
        NNDHQ KTKKQKTTRIS
Subjt:  NNDHQLKTKKQKTTRIS

XP_038898977.1 uncharacterized protein LOC120086413 isoform X2 [Benincasa hispida]

5.1e-93

65.3

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Query:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV
        M+GLKVSDANMVVYVHPSKSKKVSQAVLR LGAMLLKFDEKFEGVLLAYEAKIIDK AKILSGVHPYF VTI AKLLLFSPKPNML+    M++ + +G+
Subjt:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV

Query:  ----SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSV
             F          +  +  +GKVVKLRQE+IHVIVLGFASAVIT+EDIRDEFKH+TKHGEEMFV+RAHKHHVIKVGTMI+FLVK  D          
Subjt:  ----SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSV

Query:  TFKWKVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMREN--EVMGQDSIATDANAVIL
                                                 EILHI+GSLVPSHTGSIHWLEKNSVEG+V+ +SKKKMREN  EVM QDS+AT+ NA+IL
Subjt:  TFKWKVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMREN--EVMGQDSIATDANAVIL

Query:  NNDHQLKTKKQKTTRIS
        NNDHQ KTKKQKTTRIS
Subjt:  NNDHQLKTKKQKTTRIS

XP_038898978.1 uncharacterized protein LOC120086413 isoform X3 [Benincasa hispida]

1.1e-92

65.18

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Query:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV
        M+GLKVSDANMVVYVHPSKSKKVSQAVLR LGAMLLKFDEKFEGVLLAYEAKIIDK AKILSGVHPYF VTI AKLLLFSPKPNML              
Subjt:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV

Query:  SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSVTFKW
                         ++GKVVKLRQE+IHVIVLGFASAVIT+EDIRDEFKH+TKHGEEMFV+RAHKHHVIKVGTMI+FLVK  D              
Subjt:  SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSVTFKW

Query:  KVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMREN--EVMGQDSIATDANAVILNNDH
                                             EILHI+GSLVPSHTGSIHWLEKNSVEG+V+++SKKKMREN  EVM QDS+AT+ NA+ILNNDH
Subjt:  KVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMREN--EVMGQDSIATDANAVILNNDH

Query:  QLKTKKQKTTRIS
        Q KTKKQKTTRIS
Subjt:  QLKTKKQKTTRIS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LGG8 Uncharacterized protein

1.3e-91

65.5

Show/hide

Query:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV
        MEGLKVSDANMVVYVHPSKSKK+SQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYF VTI AKLLLFSPKPNML              
Subjt:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV

Query:  SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSVTFKW
                         L+GKVVKLRQE+IHVIVLGFASAVIT EDIRDEFKH+TKHGEEMFV+RAHKHH+IKVGTMI+ LVK  D              
Subjt:  SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSVTFKW

Query:  KVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMRENE--VMGQDSIATDANAVILNNDH
                                             EILHISGSLVPSHTGSIHWLEKNSVEGSV+  SK+KMRENE  V  QDS+ TD NAVILNNDH
Subjt:  KVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMRENE--VMGQDSIATDANAVILNNDH

Query:  QLKTKKQKTTRIS
        Q KTKKQK TRIS
Subjt:  QLKTKKQKTTRIS

A0A1S3CRF8 uncharacterized protein LOC103503892 isoform X2

2.7e-92

67.09

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Query:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV
        MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYF VTI AKLLLFSPKPNML              
Subjt:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV

Query:  SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSVTFKW
                         L+GKVVKLRQE+IHVIVLGFASAVIT EDIRDEFKH+TKHGEEMFV+RAHKHHVIKVGTMI+FLVK  D              
Subjt:  SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSVTFKW

Query:  KVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMRENE--VMGQDSIATDANAVILNNDH
                                             EILHISGSLVPSHTGSIHWLEKNSVEGSVS  SKKKMRENE  VM QD++ TD NAVIL NDH
Subjt:  KVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMRENE--VMGQDSIATDANAVILNNDH

Query:  QLKTKKQKTTRIS
        Q KTKKQKTTRIS
Subjt:  QLKTKKQKTTRIS

A0A1S4E5I5 uncharacterized protein LOC103503892 isoform X1

1.1e-93

67.09

Show/hide

Query:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV
        MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYF VTI AKLLLFSPKPNML              
Subjt:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV

Query:  SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSVTFKW
                         L+GKVVKLRQE+IHVIVLGFASAVIT EDIRDEFKH+TKHGEEMFV+RAHKHHVIKVGTMI+FLVK  D              
Subjt:  SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSVTFKW

Query:  KVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMRENE--VMGQDSIATDANAVILNNDH
                                             EILHISGSLVPSHTGSIHWLEKNSVEGSVS +SKKKMRENE  VM QD++ TD NAVIL NDH
Subjt:  KVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMRENE--VMGQDSIATDANAVILNNDH

Query:  QLKTKKQKTTRIS
        Q KTKKQKTTRIS
Subjt:  QLKTKKQKTTRIS

A0A5D3E6A0 Putative DNA-directed RNA polymerase I subunit RPA43

1.1e-93

67.09

Show/hide

Query:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV
        MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYF VTI AKLLLFSPKPNML              
Subjt:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV

Query:  SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSVTFKW
                         L+GKVVKLRQE+IHVIVLGFASAVIT EDIRDEFKH+TKHGEEMFV+RAHKHHVIKVGTMI+FLVK  D              
Subjt:  SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSVTFKW

Query:  KVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMRENE--VMGQDSIATDANAVILNNDH
                                             EILHISGSLVPSHTGSIHWLEKNSVEGSVS +SKKKMRENE  VM QD++ TD NAVIL NDH
Subjt:  KVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMRENE--VMGQDSIATDANAVILNNDH

Query:  QLKTKKQKTTRIS
        Q KTKKQKTTRIS
Subjt:  QLKTKKQKTTRIS

A0A6J1D5Y9 uncharacterized protein LOC111016757

1.3e-89

62.3

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Query:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV
        MEGLKVSDAN+VVYVHPSKSKKVSQAVLRELGAMLLKFDE+FEGVLLAY+AKI DK+AKILSGVHPYF VT+ AKLLLFSPKPNML              
Subjt:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV

Query:  SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSVTFKW
                         L+GKVVKLRQE++HVIVLGFASA ITDEDIRDEFKH+TKH EEMFV+RAHKHHVIKVGTMI+FLVK  D              
Subjt:  SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSVTFKW

Query:  KVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMREN--EVMGQDSIATDANAVILNNDH
                                             EILHISGSLVPSHTGSIHWLEKNS+EGSV++  +KK R+N  E + QDS+ATD NA+ILNNDH
Subjt:  KVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMREN--EVMGQDSIATDANAVILNNDH

Query:  QLKTKKQKTTRIS
        Q KTKKQKT+RIS
Subjt:  QLKTKKQKTTRIS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G75670.1 DNA-directed RNA polymerases

2.5e-45

37.09

Show/hide

Query:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV
        MEGLK+S+A +++++HPS+S+ V Q + REL ++L +++E F+GVLLAY+A +  K AKIL+G+HPYF V +N +LLLF PKP                 
Subjt:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV

Query:  SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSVTFKW
        SFV               +GK+VK+  E+IHVIVLGF++AVITD DIR+EFK++ + GE  FV+R+HK H +K+GTM++  V+  D              
Subjt:  SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSVTFKW

Query:  KVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMR
                                             E++HI+GSL+P +TG + WLEK S E   ++   K+ +
Subjt:  KVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMR

AT1G75670.2 DNA-directed RNA polymerases

2.5e-45

37.09

Show/hide

Query:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV
        MEGLK+S+A +++++HPS+S+ V Q + REL ++L +++E F+GVLLAY+A +  K AKIL+G+HPYF V +N +LLLF PKP                 
Subjt:  MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGV

Query:  SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSVTFKW
        SFV               +GK+VK+  E+IHVIVLGF++AVITD DIR+EFK++ + GE  FV+R+HK H +K+GTM++  V+  D              
Subjt:  SFVHLSVVSTRKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSVTFKW

Query:  KVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMR
                                             E++HI+GSL+P +TG + WLEK S E   ++   K+ +
Subjt:  KVILEVFIHIIEGQNQSSYLIDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAGGGGCTCAAGGTTTCGGATGCTAATATGGTTGTTTACGTTCACCCATCCAAAAGTAAGAAGGTGTCGCAAGCAGTGCTTCGAGAGCTCGGCGCTATGCTTTTAAA
ATTTGATGAAAAATTTGAAGGTGTGCTACTGGCTTATGAGGCCAAAATTATTGATAAAAATGCGAAGATTCTATCTGGAGTGCATCCCTATTTTAGCGTGACAATAAATG
CAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGGTTGGTTTTCTATGATTCTCATTGTATGTGAAGGAGTTTCATTTGTTCATCTCTCCGTTGTTTCCACT
AGGAAAACAACACATCTAGAATTAAAAGGAAAGGTGGTGAAGCTTAGGCAAGAAGCAATCCATGTTATTGTCTTAGGTTTCGCCTCTGCTGTAATAACTGACGAAGACAT
TCGCGACGAATTTAAGCATAAAACAAAACATGGAGAAGAAATGTTTGTCAACAGAGCTCACAAGCACCATGTAATAAAGGTTGGGACAATGATACAATTTTTGGTGAAGA
GGTTAGATTCCGTTTCCTTTAATTACGTTTATTCTGTAACATTTAAGTGGAAAGTTATTCTTGAAGTTTTCATCCATATAATTGAGGGCCAGAACCAAAGCTCATATCTG
ATTGATAGTCTGCCAAATTTATCAATATTTCCTGATTATTCTTCTTCTTCAGAAATATTGCATATCTCTGGATCTCTAGTTCCATCTCACACAGGGAGCATCCATTGGTT
GGAGAAGAATTCGGTTGAAGGTTCAGTAAGTAATAACAGCAAAAAGAAGATGAGAGAAAACGAGGTGATGGGTCAGGATAGCATTGCCACGGATGCAAATGCAGTTATCT
TGAACAATGACCATCAGTTAAAAACCAAAAAGCAAAAAACTACCAGAATATCTTGA

mRNA sequence

Show/hide mRNA sequence

TTTAAGTTTCACTGAAAAAGCCCCTCCAGCCCAATATGTCAGCCCAACTGAAAAAATAAAAAATAACAATTTAATGAAAACCCCATGCCATCTCATCTTCAACTTCACGG
TCAGTCCTCCCCTCTCCACTCTCCTCACGCAGTCGTCACTCAGCTTCTTCATTCTTCAATCTTCACAGAGCCGGCCGGCACCAACAATTGACGGCACGGCAGCCCATTAG
CCCAACTTGTTTGCAACGATTTTTGGTTGCTCCACCTCTCCACGGTATCCCTTTCTCTTCCGCCCACCAAAAGGTTGGTTTCTGCTTCACCTCTGATTTAGTTAATCAAT
TTCTAATTTCATTAAAAGTATAGATTTTGGGGGATTCAGATTTATTTGAGGATGTGTTTGCTATTGAGGAACTGTTTTATGAGCCTATTGAATTTTGGGCTGGGACCAAA
AAAAAAGAAAAAAAGCAAATTTCAAAAGCCAACCATGGTAATCGACCAAACCAAAATCAACTTGAAAAATCGGAAGACACGCGACAAAAATTTAGAAAACGAAACGCGAT
TACACTTTTGGAAAGCAATTCTTCGGATGAGTATAAATAAACCTTAGTTTAATTTGTCCAATCAGGACACAAAAAAAACAGAATAATATGGTTCAACCTTTCGGTCTACA
TCAATTTGAGAATCAGCTTATGAGACAACACAATGAATTGAATAACATTAACACCCAATGATGTTAGAGTGAGAGAGAATCACAAATATGACTTCACCGCCGCTTTTCAG
CCTCTGTAATCAACTGCCCAGCCTCACACGAATCGTTATCCACGAATTTTTTAACCGAGATCCACGCGTTGAATCCGTCTCCTAAACCGAAGACCCACTGCCGGCGAAGC
CCCTAATCCCTCTCCATTTAGCCTTTCACGATTTCCAGCCCTAAAAGCAAAGAAGACGACCTAATTTAAAAAATGCCCGCCACGAGAAAAGATCTAAATGCCCTTGACTA
CCCGGCAGGAAAATTTCCACTCTATTTGGGCCAACTTACAGAGCCCATTAATTCCGGCCCTTTATAGTCGGAAAAGGCCAGAGTGGGCCTGTGATCCAGTCCATTATATT
AGTGAGGCCCAATTATTGATTAGGGCTCATAAGGAGATACAGTTCACTTGCGATTGATTCCGTCGATTTTGTTTCAATCCAACATCTTCAACGCACGTGTTAATAAACGT
TAGCTGTTTTTACCTTCTTCGAGCTCTCTTTCTTCTCCGGCCGGTGTGGATTCTTCTCCTCCTTGTTTCGGTCGCTGTTTCAATGGAGGGGCTCAAGGTTTCGGATGCTA
ATATGGTTGTTTACGTTCACCCATCCAAAAGTAAGAAGGTGTCGCAAGCAGTGCTTCGAGAGCTCGGCGCTATGCTTTTAAAATTTGATGAAAAATTTGAAGGTGTGCTA
CTGGCTTATGAGGCCAAAATTATTGATAAAAATGCGAAGATTCTATCTGGAGTGCATCCCTATTTTAGCGTGACAATAAATGCAAAGCTATTACTTTTCTCTCCAAAACC
AAACATGCTTTTAGGTTGGTTTTCTATGATTCTCATTGTATGTGAAGGAGTTTCATTTGTTCATCTCTCCGTTGTTTCCACTAGGAAAACAACACATCTAGAATTAAAAG
GAAAGGTGGTGAAGCTTAGGCAAGAAGCAATCCATGTTATTGTCTTAGGTTTCGCCTCTGCTGTAATAACTGACGAAGACATTCGCGACGAATTTAAGCATAAAACAAAA
CATGGAGAAGAAATGTTTGTCAACAGAGCTCACAAGCACCATGTAATAAAGGTTGGGACAATGATACAATTTTTGGTGAAGAGGTTAGATTCCGTTTCCTTTAATTACGT
TTATTCTGTAACATTTAAGTGGAAAGTTATTCTTGAAGTTTTCATCCATATAATTGAGGGCCAGAACCAAAGCTCATATCTGATTGATAGTCTGCCAAATTTATCAATAT
TTCCTGATTATTCTTCTTCTTCAGAAATATTGCATATCTCTGGATCTCTAGTTCCATCTCACACAGGGAGCATCCATTGGTTGGAGAAGAATTCGGTTGAAGGTTCAGTA
AGTAATAACAGCAAAAAGAAGATGAGAGAAAACGAGGTGATGGGTCAGGATAGCATTGCCACGGATGCAAATGCAGTTATCTTGAACAATGACCATCAGTTAAAAACCAA
AAAGCAAAAAACTACCAGAATATCTTGAAGACTACTAATTGTCATATAACATAGATCATTTTTGTATCAGGGTGATGATGAGATCCAAACTTCAAAGCAGTGATCCTCAT
TGTTTTCCTATAGTAAGAAAGGCTTGGGAGATGCATTTTGCAATTGGGAAGATCACCTCCACTTAGATAATGACATAACTTGATATATCAGGGTGTGGACAATTGCGGCT
CCCCATTTTTGAACTGTTAAGAAGAGACGGCCCAGCCCAAATGCCTGCATTATGGGCTTTAAGCCCAATAATAGACCTTGATGAGTAAATGATATTTTACAGCCCAATCT
TAGTCCAATATACAGTTGGTAGGAAGTTAATGACAGATGTCAGCAACCTAGACTTTGCTGAATATTGTCTGAGATTTGAACATTATATTTCTTAATTTCATTCAAAATCA
CGCACACACACAAACACAACACTACACCGTTAGTTTATCAATCATTATAATGAGGATATGATTTGGGGTTTGCAAGTACATTCCATTTGCACCGTTGACTCA

Protein sequence

Show/hide protein sequence

MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFSVTINAKLLLFSPKPNMLLGWFSMILIVCEGVSFVHLSVVST
RKTTHLELKGKVVKLRQEAIHVIVLGFASAVITDEDIRDEFKHKTKHGEEMFVNRAHKHHVIKVGTMIQFLVKRLDSVSFNYVYSVTFKWKVILEVFIHIIEGQNQSSYL
IDSLPNLSIFPDYSSSSEILHISGSLVPSHTGSIHWLEKNSVEGSVSNNSKKKMRENEVMGQDSIATDANAVILNNDHQLKTKKQKTTRIS

Lsi04G017270 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome