; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G017400 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G017400
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr04:24729827..24730156
RNA-Seq ExpressionLsi04G017400
SyntenyLsi04G017400
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024157.1 hypothetical protein SDJN02_12970, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-2486.49Show/hide
Query:  MKLFHRIRKILVRFVFSLPSRVSSSSSSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQD
        MKLFHRIRKILVRFVFSLPSRV      SSR+RT+YDK +DPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQD
Subjt:  MKLFHRIRKILVRFVFSLPSRVSSSSSSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQD
KGN60030.1 hypothetical protein Csa_001336 [Cucumis sativus]9.6e-3984.82Show/hide
Query:  MQRPKTTEALITA-----SSSNSLNFSSMKLFHRIRKILVRFVFSLPSRVSSSSSSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSS
        MQRPKT+ ALITA     SSSNSLNFSSMKLF RIRK+LVRFVFS+PSRV    SSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSS
Subjt:  MQRPKTTEALITA-----SSSNSLNFSSMKLFHRIRKILVRFVFSLPSRVSSSSSSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSS

Query:  QDGVFETQKPIT
        QD  FE QKPIT
Subjt:  QDGVFETQKPIT
XP_007017791.2 PREDICTED: uncharacterized protein LOC18591544 [Theobroma cacao]1.9e-2367.02Show/hide
Query:  SNSLNFSSMKLFHRIRKILVRFVFSLPSRVSSSSSSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGVFETQKPITLV
        S  LNFS+MKLF+R RKIL+R +FSLPS  SS +SS + ++T+ D+ FDPPKTSCSSYYSSHSHY EAIADCIEFFNKSSQ+G+ + +K   LV
Subjt:  SNSLNFSSMKLFHRIRKILVRFVFSLPSRVSSSSSSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGVFETQKPITLV
XP_021284958.1 uncharacterized protein LOC110417084 [Herrania umbratica]1.5e-2367.02Show/hide
Query:  SNSLNFSSMKLFHRIRKILVRFVFSLPSRVSSSSSSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGVFETQKPITLV
        S  LNFS+MKLF+R RKIL+R +FSLPS  SS +SS + ++T+ D+ FDPPKTSCSSYYSSHSHY EAIADCIEFFNKSSQ+G+ + +K   LV
Subjt:  SNSLNFSSMKLFHRIRKILVRFVFSLPSRVSSSSSSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGVFETQKPITLV
XP_024925739.1 uncharacterized protein LOC107408298 [Ziziphus jujuba]1.1e-2362.86Show/hide
Query:  TTEALITASSSNSLNFSSMKLFHRIRKILVRFVFSLPSRVSSSSSSSSR------RRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGV
        TT    T +++  LN S+MKLF+R RKIL+R +FSLP R S SSSSSS       R+ + D+SFDPPKTSCSSYYSSHSHY+EAIADCIEFFNKSSQ+G 
Subjt:  TTEALITASSSNSLNFSSMKLFHRIRKILVRFVFSLPSRVSSSSSSSSR------RRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGV

Query:  FETQK
         + +K
Subjt:  FETQK
TrEMBL top hitse value%identityAlignment
A0A061FD82 Uncharacterized protein9.4e-2467.02Show/hide
Query:  SNSLNFSSMKLFHRIRKILVRFVFSLPSRVSSSSSSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGVFETQKPITLV
        S  LNFS+MKLF+R RKIL+R +FSLPS  SS +SS + ++T+ D+ FDPPKTSCSSYYSSHSHY EAIADCIEFFNKSSQ+G+ + +K   LV
Subjt:  SNSLNFSSMKLFHRIRKILVRFVFSLPSRVSSSSSSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGVFETQKPITLV
A0A0A0LDK4 Uncharacterized protein4.6e-3984.82Show/hide
Query:  MQRPKTTEALITA-----SSSNSLNFSSMKLFHRIRKILVRFVFSLPSRVSSSSSSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSS
        MQRPKT+ ALITA     SSSNSLNFSSMKLF RIRK+LVRFVFS+PSRV    SSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSS
Subjt:  MQRPKTTEALITA-----SSSNSLNFSSMKLFHRIRKILVRFVFSLPSRVSSSSSSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSS

Query:  QDGVFETQKPIT
        QD  FE QKPIT
Subjt:  QDGVFETQKPIT
A0A6J1ADC8 uncharacterized protein LOC1104170847.2e-2467.02Show/hide
Query:  SNSLNFSSMKLFHRIRKILVRFVFSLPSRVSSSSSSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGVFETQKPITLV
        S  LNFS+MKLF+R RKIL+R +FSLPS  SS +SS + ++T+ D+ FDPPKTSCSSYYSSHSHY EAIADCIEFFNKSSQ+G+ + +K   LV
Subjt:  SNSLNFSSMKLFHRIRKILVRFVFSLPSRVSSSSSSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGVFETQKPITLV
A0A6P6FUZ0 uncharacterized protein LOC1074082985.5e-2462.86Show/hide
Query:  TTEALITASSSNSLNFSSMKLFHRIRKILVRFVFSLPSRVSSSSSSSSR------RRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGV
        TT    T +++  LN S+MKLF+R RKIL+R +FSLP R S SSSSSS       R+ + D+SFDPPKTSCSSYYSSHSHY+EAIADCIEFFNKSSQ+G 
Subjt:  TTEALITASSSNSLNFSSMKLFHRIRKILVRFVFSLPSRVSSSSSSSSR------RRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGV

Query:  FETQK
         + +K
Subjt:  FETQK
A0A6P9EMF7 uncharacterized protein LOC1090199911.0e-2265Show/hide
Query:  SSNSLNFSSMKLFHRIRKILVRFVFSLPSRVSSSSS-----SSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGVFETQKPITLV
        S   +NFS+MKLF+R RKIL+R +FSLPS  SSSSS     SS+ R+ S D+ F+PPKTSCSSYYSSHSHY+EAIADCIEFFNKSSQDG+ + +K   +V
Subjt:  SSNSLNFSSMKLFHRIRKILVRFVFSLPSRVSSSSS-----SSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGVFETQKPITLV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G75717.1 unknown protein1.9e-1359.46Show/hide
Query:  MKLFHRIRKILVRFV-FSLPSRVSSSSSSSSRRRTSYDKSFDPPKTSC-SSYYSSHSHYDEAIADCIEFFNKSS
        MKLFH++ KIL+R + F+L S  SS     +  R+   + F+PPK SC SSYYSSH HY EAIADCIEFFNKSS
Subjt:  MKLFHRIRKILVRFV-FSLPSRVSSSSSSSSRRRTSYDKSFDPPKTSC-SSYYSSHSHYDEAIADCIEFFNKSS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGGCCTAAAACCACTGAAGCCCTTATCACTGCTTCTTCTTCCAACTCTCTTAACTTCTCTTCCATGAAGCTCTTTCATCGAATCCGTAAGATACTTGTACGCTT
TGTCTTCTCGCTCCCATCTCGAGTGTCGTCATCGTCATCGTCGTCATCGAGACGAAGAACAAGCTATGACAAGTCGTTTGATCCACCAAAAACATCATGCAGTTCGTATT
ACTCATCCCACTCCCACTACGACGAGGCCATTGCTGATTGTATTGAGTTCTTCAACAAGTCGTCGCAAGATGGGGTTTTTGAAACTCAAAAACCAATCACTTTGGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGGCCTAAAACCACTGAAGCCCTTATCACTGCTTCTTCTTCCAACTCTCTTAACTTCTCTTCCATGAAGCTCTTTCATCGAATCCGTAAGATACTTGTACGCTT
TGTCTTCTCGCTCCCATCTCGAGTGTCGTCATCGTCATCGTCGTCATCGAGACGAAGAACAAGCTATGACAAGTCGTTTGATCCACCAAAAACATCATGCAGTTCGTATT
ACTCATCCCACTCCCACTACGACGAGGCCATTGCTGATTGTATTGAGTTCTTCAACAAGTCGTCGCAAGATGGGGTTTTTGAAACTCAAAAACCAATCACTTTGGTATGA
Protein sequenceShow/hide protein sequence
MQRPKTTEALITASSSNSLNFSSMKLFHRIRKILVRFVFSLPSRVSSSSSSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGVFETQKPITLV