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Lsi04G017480 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G017480
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTransmembrane protein
Genome locationchr04:24760013..24760390
RNA-Seq ExpressionLsi04G017480
SyntenyLsi04G017480
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063287.1 hypothetical protein E6C27_scaffold205G001100 [Cucumis melo var. makuwa]2.3e-5794.4Show/hide
Query:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGA
        MSWVVEERGPEWKYGW ER MASMSLPPMPLLAFLGVVVLLLSLQSQQMV DFKL LLALPFL+IF ANSVAVSGTVGSAAMRTK+RSAQEAERTSPWGA
Subjt:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGA

Query:  AVLLFLLLILLWNRPYFRSKWSPPS
        AVLLFLLLILLWNRPYFRSKWSPPS
Subjt:  AVLLFLLLILLWNRPYFRSKWSPPS
KAG6608597.1 hypothetical protein SDJN03_01939, partial [Cucurbita argyrosperma subsp. sororia]2.7e-4586.84Show/hide
Query:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGA
        MSW  EER  EWKYGWAERTMASMSLPPMPLLAFLGVV+LLLSLQSQ M FDFKLFLLALPFLLIF+ANS+ V+G+V S AMRTKNRSAQEAE+TSPWGA
Subjt:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGA

Query:  AVLLFLLLILLWNR
        AVLLFLLLILLWNR
Subjt:  AVLLFLLLILLWNR
KAG7037914.1 hypothetical protein SDJN02_01545, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-4586.84Show/hide
Query:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGA
        MSW  EER PEWKYGWAERT+ASMS PPMPLLAFLGVV+LLLSLQSQ+M FDFKLFLLALPFLLIF+ANS+ VSG+V S AMRTKNRSAQEAE+TSPWGA
Subjt:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGA

Query:  AVLLFLLLILLWNR
        AVLLFLLLILLWNR
Subjt:  AVLLFLLLILLWNR
KGN60038.1 hypothetical protein Csa_001668 [Cucumis sativus]3.1e-5793.6Show/hide
Query:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGA
        MSWVVEERGPEWKYGW ER M+SMSLPPMPLLAFLGVVVLLLSLQSQQMV DFKL LLALPFL+IFVANSVAVSGTVGSA+MRTK+RSAQEAERTSPWGA
Subjt:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGA

Query:  AVLLFLLLILLWNRPYFRSKWSPPS
        AVLLFLLLILLWNRPYFRSKWSPPS
Subjt:  AVLLFLLLILLWNRPYFRSKWSPPS
TYK31488.1 hypothetical protein E5676_scaffold455G008040 [Cucumis melo var. makuwa]6.8e-5793.6Show/hide
Query:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGA
        MSWVVEERGPEWKYGW ER MASMSLPPMPLLAFLGVVVLLLSLQSQQMV DFKL LLALPF +IF ANSVAVSGTVGSAAMRTK+RSAQEAERTSPWGA
Subjt:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGA

Query:  AVLLFLLLILLWNRPYFRSKWSPPS
        AVLLFLLLILLWNRPYFRSKWSPPS
Subjt:  AVLLFLLLILLWNRPYFRSKWSPPS
TrEMBL top hitse value%identityAlignment
A0A0A0LE80 Uncharacterized protein1.5e-5793.6Show/hide
Query:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGA
        MSWVVEERGPEWKYGW ER M+SMSLPPMPLLAFLGVVVLLLSLQSQQMV DFKL LLALPFL+IFVANSVAVSGTVGSA+MRTK+RSAQEAERTSPWGA
Subjt:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGA

Query:  AVLLFLLLILLWNRPYFRSKWSPPS
        AVLLFLLLILLWNRPYFRSKWSPPS
Subjt:  AVLLFLLLILLWNRPYFRSKWSPPS
A0A5A7V8G0 Uncharacterized protein1.1e-5794.4Show/hide
Query:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGA
        MSWVVEERGPEWKYGW ER MASMSLPPMPLLAFLGVVVLLLSLQSQQMV DFKL LLALPFL+IF ANSVAVSGTVGSAAMRTK+RSAQEAERTSPWGA
Subjt:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGA

Query:  AVLLFLLLILLWNRPYFRSKWSPPS
        AVLLFLLLILLWNRPYFRSKWSPPS
Subjt:  AVLLFLLLILLWNRPYFRSKWSPPS
A0A5D3E6P1 Uncharacterized protein3.3e-5793.6Show/hide
Query:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGA
        MSWVVEERGPEWKYGW ER MASMSLPPMPLLAFLGVVVLLLSLQSQQMV DFKL LLALPF +IF ANSVAVSGTVGSAAMRTK+RSAQEAERTSPWGA
Subjt:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGA

Query:  AVLLFLLLILLWNRPYFRSKWSPPS
        AVLLFLLLILLWNRPYFRSKWSPPS
Subjt:  AVLLFLLLILLWNRPYFRSKWSPPS
A0A6J1FL09 uncharacterized protein LOC1114462113.8e-4585.96Show/hide
Query:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGA
        MSW  EER PEWKYGWAERT+ASMS PPMPLLAFLGVV+LLLSLQSQ+M  DFKLFLLALPFLLIF+ANS+ VSG+V S AMRTKNRSAQEAE+TSPWGA
Subjt:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGA

Query:  AVLLFLLLILLWNR
        AVLLFLLLILLWNR
Subjt:  AVLLFLLLILLWNR
W9RNV3 Uncharacterized protein2.0e-2248.51Show/hide
Query:  MSWVVEE--RGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSL--------QSQQMVFDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQ
        M W++ E   G  WK GW ERT+AS++ PP+PLLA +G+VV+LLS+        Q Q+ V  F+LFLL LP +LIFVA+SV   GTV     RTK+ +  
Subjt:  MSWVVEE--RGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSL--------QSQQMVFDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQ

Query:  EAERTSPWGAAVLLFLLLILLWNRPYFRSKWSPP
        E   T PWG  VLL +L +L+  + YF+SKW PP
Subjt:  EAERTSPWGAAVLLFLLLILLWNRPYFRSKWSPP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G42146.1 unknown protein2.4e-1536.3Show/hide
Query:  MSWVVEE-RGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQS--------QQMVFDFKLFLLALPFLLIFVANSVAVSGTV---GSAAMRTKNRS
        M W ++E RG  WK GW E T+ + S PP+ LLA L ++ LLL L S        ++   + KLF+L LP L +FV  S++    +    S ++R     
Subjt:  MSWVVEE-RGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQS--------QQMVFDFKLFLLALPFLLIFVANSVAVSGTV---GSAAMRTKNRS

Query:  AQEAERTSPWGAAVLLFLLLILLWNRPYFRSKWSP
        +   E   PWG  ++L LLL+L+  + YF S W P
Subjt:  AQEAERTSPWGAAVLLFLLLILLWNRPYFRSKWSP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTGGGTGGTGGAGGAAAGAGGTCCCGAGTGGAAGTATGGATGGGCTGAGAGAACAATGGCTTCCATGTCTCTCCCACCTATGCCGCTGCTCGCATTTCTCGGCGT
CGTCGTTCTTCTGCTTTCTTTGCAGTCTCAGCAGATGGTGTTCGACTTCAAGCTATTCCTTTTGGCTTTGCCATTTTTGCTGATCTTTGTTGCAAATTCTGTTGCTGTGT
CTGGTACAGTTGGTTCTGCTGCCATGAGAACTAAGAACAGGTCGGCTCAGGAGGCCGAAAGGACCTCACCTTGGGGTGCCGCGGTGTTGCTGTTTCTGCTGCTGATATTG
CTGTGGAACCGTCCTTACTTTAGGTCCAAGTGGTCACCTCCATCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTGGGTGGTGGAGGAAAGAGGTCCCGAGTGGAAGTATGGATGGGCTGAGAGAACAATGGCTTCCATGTCTCTCCCACCTATGCCGCTGCTCGCATTTCTCGGCGT
CGTCGTTCTTCTGCTTTCTTTGCAGTCTCAGCAGATGGTGTTCGACTTCAAGCTATTCCTTTTGGCTTTGCCATTTTTGCTGATCTTTGTTGCAAATTCTGTTGCTGTGT
CTGGTACAGTTGGTTCTGCTGCCATGAGAACTAAGAACAGGTCGGCTCAGGAGGCCGAAAGGACCTCACCTTGGGGTGCCGCGGTGTTGCTGTTTCTGCTGCTGATATTG
CTGTGGAACCGTCCTTACTTTAGGTCCAAGTGGTCACCTCCATCTTAA
Protein sequenceShow/hide protein sequence
MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSVAVSGTVGSAAMRTKNRSAQEAERTSPWGAAVLLFLLLIL
LWNRPYFRSKWSPPS