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Lsi04G017560 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G017560
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationchr04:24815257..24815550
RNA-Seq ExpressionLsi04G017560
SyntenyLsi04G017560
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0004842 - ubiquitin-protein transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063290.1 putative E3 ubiquitin-protein ligase LIN-1 [Cucumis melo var. makuwa]1.9e-3888.66Show/hide
Query:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA
        MAGE RF+MDQKDIVRILVATIDDF RGRLINKEQ N+H EQCAERLAAEGGSNDKDTEVRYSDQAVL NLDW IEA  EALNTSNM TKLARLDHA
Subjt:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA

TYK31485.1 putative E3 ubiquitin-protein ligase LIN-1 [Cucumis melo var. makuwa]1.9e-3888.66Show/hide
Query:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA
        MAGE RF+MDQKDIVRILVATIDDF RGRLINKEQ N+H EQCAERLAAEGGSNDKDTEVRYSDQAVL NLDW IEA  EALNTSNM TKLARLDHA
Subjt:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA

XP_008466477.1 PREDICTED: LOW QUALITY PROTEIN: putative E3 ubiquitin-protein ligase LIN-1 [Cucumis melo]1.9e-3888.66Show/hide
Query:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA
        MAGE RF+MDQKDIVRILVATIDDF RGRLINKEQ N+H EQCAERLAAEGGSNDKDTEVRYSDQAVL NLDW IEA  EALNTSNM TKLARLDHA
Subjt:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA

XP_031737806.1 putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Cucumis sativus]3.2e-3887.63Show/hide
Query:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA
        MAGE RF+MDQKDIVRILVATID+FTRGRLINKEQ N+H EQCAERLA+EGGSNDKDTEVRYSDQAVL NLDW IEA  EALNTSNM TKLARLDHA
Subjt:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA

XP_031737810.1 putative E3 ubiquitin-protein ligase LIN-1 isoform X3 [Cucumis sativus]3.2e-3887.63Show/hide
Query:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA
        MAGE RF+MDQKDIVRILVATID+FTRGRLINKEQ N+H EQCAERLA+EGGSNDKDTEVRYSDQAVL NLDW IEA  EALNTSNM TKLARLDHA
Subjt:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA

TrEMBL top hitse value%identityAlignment
A0A0A0LJ65 RING-type E3 ubiquitin transferase1.6e-3887.63Show/hide
Query:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA
        MAGE RF+MDQKDIVRILVATID+FTRGRLINKEQ N+H EQCAERLA+EGGSNDKDTEVRYSDQAVL NLDW IEA  EALNTSNM TKLARLDHA
Subjt:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA

A0A1S3CRI2 RING-type E3 ubiquitin transferase9.2e-3988.66Show/hide
Query:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA
        MAGE RF+MDQKDIVRILVATIDDF RGRLINKEQ N+H EQCAERLAAEGGSNDKDTEVRYSDQAVL NLDW IEA  EALNTSNM TKLARLDHA
Subjt:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA

A0A5A7V7S0 RING-type E3 ubiquitin transferase9.2e-3988.66Show/hide
Query:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA
        MAGE RF+MDQKDIVRILVATIDDF RGRLINKEQ N+H EQCAERLAAEGGSNDKDTEVRYSDQAVL NLDW IEA  EALNTSNM TKLARLDHA
Subjt:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA

A0A5D3E833 RING-type E3 ubiquitin transferase9.2e-3988.66Show/hide
Query:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA
        MAGE RF+MDQKDIVRILVATIDDF RGRLINKEQ N+H EQCAERLAAEGGSNDKDTEVRYSDQAVL NLDW IEA  EALNTSNM TKLARLDHA
Subjt:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA

A0A6J1F9D5 RING-type E3 ubiquitin transferase2.5e-3683.51Show/hide
Query:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA
        MAGE RFAMDQKDIVR+LVATIDDFTRGRL+NKE  N+H EQCAERLAAE GS+DKDTEVRYSDQAVL NLDW IEA  EALNTSN+ TK ARLDHA
Subjt:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA

SwissProt top hitse value%identityAlignment
C6L7U1 Putative E3 ubiquitin-protein ligase LIN-12.3e-3172.16Show/hide
Query:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA
        MA   RF MDQKDIVR L  T+D F + RLINKEQ   H EQCAERLAAE GS DKDTEV YSDQAVL NLDW IEA  EA+NT NM TKLARLD+A
Subjt:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA

D1FP53 Putative E3 ubiquitin-protein ligase LIN6.8e-3170.1Show/hide
Query:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA
        M+G  RF MDQKDIVR L  TID F + RLINKEQ   H +QCAERLAAE G+ DK+TEV YSDQAVL NLDW IEA  EA+NT NM TKLARLD+A
Subjt:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA

D1FP57 Putative E3 ubiquitin-protein ligase LIN-22.8e-3273.2Show/hide
Query:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA
        MAG  RF MDQKDIVR L  T+D F + RLINKEQ   H EQCAERLAAE GS DKDTEV YSDQAVL NLDW IEA  EA+NT NM TKLARLD+A
Subjt:  MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGGTGAAGATAGGTTCGCAATGGACCAAAAGGATATTGTGAGGATACTGGTTGCCACCATTGATGATTTCACTAGAGGTCGTTTGATCAATAAAGAGCAGATAAA
CGTTCACATAGAGCAGTGTGCTGAGAGATTGGCAGCTGAAGGTGGAAGCAATGACAAAGATACAGAGGTTAGATACTCTGATCAAGCAGTGCTGACGAATTTGGATTGGG
TTATTGAAGCCTTTGGGGAGGCTTTAAACACATCCAATATGGGGACTAAGCTTGCACGACTTGACCATGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGGTGAAGATAGGTTCGCAATGGACCAAAAGGATATTGTGAGGATACTGGTTGCCACCATTGATGATTTCACTAGAGGTCGTTTGATCAATAAAGAGCAGATAAA
CGTTCACATAGAGCAGTGTGCTGAGAGATTGGCAGCTGAAGGTGGAAGCAATGACAAAGATACAGAGGTTAGATACTCTGATCAAGCAGTGCTGACGAATTTGGATTGGG
TTATTGAAGCCTTTGGGGAGGCTTTAAACACATCCAATATGGGGACTAAGCTTGCACGACTTGACCATGCATAG
Protein sequenceShow/hide protein sequence
MAGEDRFAMDQKDIVRILVATIDDFTRGRLINKEQINVHIEQCAERLAAEGGSNDKDTEVRYSDQAVLTNLDWVIEAFGEALNTSNMGTKLARLDHA