CuGenDBv2

Gene ID	Lsi04G017590
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Genome location	chr04:24845378..24845950
RNA-Seq Expression	Lsi04G017590
Synteny	Lsi04G017590
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0063295.1 uncharacterized protein E6C27_scaffold205G001180 [Cucumis melo var. makuwa]

1.6e-73

80.73

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Query:  MADSYFLDRPAAFGYNPTRISNNFHLENIAA-SGYTHGGLLQTPPRFLSAPSFHSHQFYPFIQQQQSPPPLLPPRMPPSILRPHRSLPSQPRSHSLKKSK
        MAD YFLDR  + G+N TRI+NNFHLEN+AA SGY+HGGLLQTPPRFLSAPSFH+HQ YPF QQ +SPP L PP   PS LRPHRSL SQPRSHSLKKSK
Subjt:  MADSYFLDRPAAFGYNPTRISNNFHLENIAA-SGYTHGGLLQTPPRFLSAPSFHSHQFYPFIQQQQSPPPLLPPRMPPSILRPHRSLPSQPRSHSLKKSK

Query:  STKRDKDSAAAVDRRISSRTFSAA-AGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAK-LNCNVEAAGADDGAAAADDLRRLLRL
        ST+++KDSAA VDRRI SRT S+A A KRVVRVEELEKLSGC FA+ISPPPSSLPLPKFS+RPAK L CNVEAAGADDGAAAADDLRRLLRL
Subjt:  STKRDKDSAAAVDRRISSRTFSAA-AGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAK-LNCNVEAAGADDGAAAADDLRRLLRL

KAG6608604.1 hypothetical protein SDJN03_01946, partial [Cucurbita argyrosperma subsp. sororia]

2.2e-59

76.47

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Query:  MADSYFLDRPAAFGYNPTRISNNFHLENIAASGYTHGGLLQTPPRFLSAPSFHSHQFYPFI-QQQQSPPPLLPPRMPPSILRPHRSLPSQPR-SHSLKKS
        MAD YFLDR +  GY PTR+SN FHL+N A  G +HGGLLQTPPRF S PS HSHQ  PFI QQQQ PPPLL    PP ILRPHR+L SQPR SHSLKKS
Subjt:  MADSYFLDRPAAFGYNPTRISNNFHLENIAASGYTHGGLLQTPPRFLSAPSFHSHQFYPFI-QQQQSPPPLLPPRMPPSILRPHRSLPSQPR-SHSLKKS

Query:  KSTKRDKDSAAAVDRRISSRTFSA-AAGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAKLNCN
        KS KRDKDSAA VDRR+ SRTFS+ AA KRVVRVEE +KLSGCLFAVISPPPSSLPLPKF LRP KLNCN
Subjt:  KSTKRDKDSAAAVDRRISSRTFSA-AAGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAKLNCN

KGN60046.1 hypothetical protein Csa_001363 [Cucumis sativus]

4.3e-71

78.35

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Query:  MADSYFLDRPAAFGYNPTRISNNFHLENIAA-SGYTHGGLLQTPPRFLSAPSFHSHQFYPFIQQQQSPPPLLPPRMP-PSILRPHRSLPSQPRSHSLKKS
        MAD YFLDR  + G+N TRISN+FHLEN+AA SG++HGGLLQTPPRFLSAPSFH+HQ YPF QQ +SPP L PP  P  S +RPHRSLPSQPRSHSLKKS
Subjt:  MADSYFLDRPAAFGYNPTRISNNFHLENIAA-SGYTHGGLLQTPPRFLSAPSFHSHQFYPFIQQQQSPPPLLPPRMP-PSILRPHRSLPSQPRSHSLKKS

Query:  KSTKRDKDSAAAVDRRISSRTFSA--AAGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAK-LNCNVEAAGADDGAAAADDLRRLLRL
        KST+++KDSAA VDRRI SRT S+  A  KRVVRVEELEKLSGC F VISPPPSSLPLPKFS+RPAK LNCNVEA G DDGAAAADDLRRLLRL
Subjt:  KSTKRDKDSAAAVDRRISSRTFSA--AAGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAK-LNCNVEAAGADDGAAAADDLRRLLRL

XP_008466665.1 PREDICTED: uncharacterized protein LOC103504021 [Cucumis melo]

4.6e-73

80.21

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Query:  MADSYFLDRPAAFGYNPTRISNNFHLENIAA-SGYTHGGLLQTPPRFLSAPSFHSHQFYPFIQQQQSPPPLLPPRMPPSILRPHRSLPSQPRSHSLKKSK
        MAD YFLDR  + G+N TRI+NNFHLEN+AA SGY+HGGLLQTPPRFLSAPSFH+HQ YPF QQ +SPP L PP   PS LRPHRSL SQPRSHSLKKSK
Subjt:  MADSYFLDRPAAFGYNPTRISNNFHLENIAA-SGYTHGGLLQTPPRFLSAPSFHSHQFYPFIQQQQSPPPLLPPRMPPSILRPHRSLPSQPRSHSLKKSK

Query:  STKRDKDSAAAVDRRISSRTFSAA-AGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAK-LNCNVEAAGADDGAAAADDLRRLLRL
        ST+++KDSA  VDRRI SRT S+A A KRVVRVEELEKLSGC FA+ISPPPSSLPLPKFS+RPAK L CNVEAAGADDGAAAADDLRRLLRL
Subjt:  STKRDKDSAAAVDRRISSRTFSAA-AGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAK-LNCNVEAAGADDGAAAADDLRRLLRL

XP_022139188.1 uncharacterized protein LOC111010153 [Momordica charantia]

1.0e-56

72.55

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Query:  MADSYFLDRPAAFGYNPTR---ISN---NFHLENI-AASGYTHGGLLQTPPRFLSAPS-FHSHQFYPFIQQQQSPPPLLPPRMPPSILRPHRSLPSQP-R
        MAD YFLDRP   GYN TR   ISN   N++LENI AA+G  HGGLL+TPPRF SAPS  H HQF+PFIQ Q  PPPLL    PP ILRPHRSLPSQP R
Subjt:  MADSYFLDRPAAFGYNPTR---ISN---NFHLENI-AASGYTHGGLLQTPPRFLSAPS-FHSHQFYPFIQQQQSPPPLLPPRMPPSILRPHRSLPSQP-R

Query:  SHSL--KKSKSTKRDKD--SAAAVDRRISSRTFS-AAAGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAKLNCNVEAAGADDGAAAADDLRRL
        SHSL  KKSKS KR +   S A VDRR +SRT S AAA KRVV+VEEL+ LSGCLFA +SPPPSSLPLPKF LRPAKLNCNVEAAG DDGA  ADDLRRL
Subjt:  SHSL--KKSKSTKRDKD--SAAAVDRRISSRTFS-AAAGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAKLNCNVEAAGADDGAAAADDLRRL

Query:  LRLR
        LRLR
Subjt:  LRLR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJ69 Uncharacterized protein

2.1e-71

78.35

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Query:  MADSYFLDRPAAFGYNPTRISNNFHLENIAA-SGYTHGGLLQTPPRFLSAPSFHSHQFYPFIQQQQSPPPLLPPRMP-PSILRPHRSLPSQPRSHSLKKS
        MAD YFLDR  + G+N TRISN+FHLEN+AA SG++HGGLLQTPPRFLSAPSFH+HQ YPF QQ +SPP L PP  P  S +RPHRSLPSQPRSHSLKKS
Subjt:  MADSYFLDRPAAFGYNPTRISNNFHLENIAA-SGYTHGGLLQTPPRFLSAPSFHSHQFYPFIQQQQSPPPLLPPRMP-PSILRPHRSLPSQPRSHSLKKS

Query:  KSTKRDKDSAAAVDRRISSRTFSA--AAGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAK-LNCNVEAAGADDGAAAADDLRRLLRL
        KST+++KDSAA VDRRI SRT S+  A  KRVVRVEELEKLSGC F VISPPPSSLPLPKFS+RPAK LNCNVEA G DDGAAAADDLRRLLRL
Subjt:  KSTKRDKDSAAAVDRRISSRTFSA--AAGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAK-LNCNVEAAGADDGAAAADDLRRLLRL

A0A1S3CRS4 uncharacterized protein LOC103504021

2.2e-73

80.21

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Query:  MADSYFLDRPAAFGYNPTRISNNFHLENIAA-SGYTHGGLLQTPPRFLSAPSFHSHQFYPFIQQQQSPPPLLPPRMPPSILRPHRSLPSQPRSHSLKKSK
        MAD YFLDR  + G+N TRI+NNFHLEN+AA SGY+HGGLLQTPPRFLSAPSFH+HQ YPF QQ +SPP L PP   PS LRPHRSL SQPRSHSLKKSK
Subjt:  MADSYFLDRPAAFGYNPTRISNNFHLENIAA-SGYTHGGLLQTPPRFLSAPSFHSHQFYPFIQQQQSPPPLLPPRMPPSILRPHRSLPSQPRSHSLKKSK

Query:  STKRDKDSAAAVDRRISSRTFSAA-AGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAK-LNCNVEAAGADDGAAAADDLRRLLRL
        ST+++KDSA  VDRRI SRT S+A A KRVVRVEELEKLSGC FA+ISPPPSSLPLPKFS+RPAK L CNVEAAGADDGAAAADDLRRLLRL
Subjt:  STKRDKDSAAAVDRRISSRTFSAA-AGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAK-LNCNVEAAGADDGAAAADDLRRLLRL

A0A5A7VBL8 Uncharacterized protein

7.7e-74

80.73

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Query:  MADSYFLDRPAAFGYNPTRISNNFHLENIAA-SGYTHGGLLQTPPRFLSAPSFHSHQFYPFIQQQQSPPPLLPPRMPPSILRPHRSLPSQPRSHSLKKSK
        MAD YFLDR  + G+N TRI+NNFHLEN+AA SGY+HGGLLQTPPRFLSAPSFH+HQ YPF QQ +SPP L PP   PS LRPHRSL SQPRSHSLKKSK
Subjt:  MADSYFLDRPAAFGYNPTRISNNFHLENIAA-SGYTHGGLLQTPPRFLSAPSFHSHQFYPFIQQQQSPPPLLPPRMPPSILRPHRSLPSQPRSHSLKKSK

Query:  STKRDKDSAAAVDRRISSRTFSAA-AGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAK-LNCNVEAAGADDGAAAADDLRRLLRL
        ST+++KDSAA VDRRI SRT S+A A KRVVRVEELEKLSGC FA+ISPPPSSLPLPKFS+RPAK L CNVEAAGADDGAAAADDLRRLLRL
Subjt:  STKRDKDSAAAVDRRISSRTFSAA-AGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAK-LNCNVEAAGADDGAAAADDLRRLLRL

A0A5D3E771 Uncharacterized protein

2.2e-73

80.21

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Query:  MADSYFLDRPAAFGYNPTRISNNFHLENIAA-SGYTHGGLLQTPPRFLSAPSFHSHQFYPFIQQQQSPPPLLPPRMPPSILRPHRSLPSQPRSHSLKKSK
        MAD YFLDR  + G+N TRI+NNFHLEN+AA SGY+HGGLLQTPPRFLSAPSFH+HQ YPF QQ +SPP L PP   PS LRPHRSL SQPRSHSLKKSK
Subjt:  MADSYFLDRPAAFGYNPTRISNNFHLENIAA-SGYTHGGLLQTPPRFLSAPSFHSHQFYPFIQQQQSPPPLLPPRMPPSILRPHRSLPSQPRSHSLKKSK

Query:  STKRDKDSAAAVDRRISSRTFSAA-AGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAK-LNCNVEAAGADDGAAAADDLRRLLRL
        ST+++KDSA  VDRRI SRT S+A A KRVVRVEELEKLSGC FA+ISPPPSSLPLPKFS+RPAK L CNVEAAGADDGAAAADDLRRLLRL
Subjt:  STKRDKDSAAAVDRRISSRTFSAA-AGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAK-LNCNVEAAGADDGAAAADDLRRLLRL

A0A6J1CF43 uncharacterized protein LOC111010153

5.0e-57

72.55

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Query:  MADSYFLDRPAAFGYNPTR---ISN---NFHLENI-AASGYTHGGLLQTPPRFLSAPS-FHSHQFYPFIQQQQSPPPLLPPRMPPSILRPHRSLPSQP-R
        MAD YFLDRP   GYN TR   ISN   N++LENI AA+G  HGGLL+TPPRF SAPS  H HQF+PFIQ Q  PPPLL    PP ILRPHRSLPSQP R
Subjt:  MADSYFLDRPAAFGYNPTR---ISN---NFHLENI-AASGYTHGGLLQTPPRFLSAPS-FHSHQFYPFIQQQQSPPPLLPPRMPPSILRPHRSLPSQP-R

Query:  SHSL--KKSKSTKRDKD--SAAAVDRRISSRTFS-AAAGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAKLNCNVEAAGADDGAAAADDLRRL
        SHSL  KKSKS KR +   S A VDRR +SRT S AAA KRVV+VEEL+ LSGCLFA +SPPPSSLPLPKF LRPAKLNCNVEAAG DDGA  ADDLRRL
Subjt:  SHSL--KKSKSTKRDKD--SAAAVDRRISSRTFS-AAAGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAKLNCNVEAAGADDGAAAADDLRRL

Query:  LRLR
        LRLR
Subjt:  LRLR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G20070.1 unknown protein

1.1e-08

37.2

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Query:  GGLLQTPPRFLSAPSFHSHQFYPFIQQQQSPPPLLP-PRMPPSILRPHRSLPSQPR---SHSLKKSKSTKRDKDS----AAAVDRRISSRTFSAAAGKRV
        GG L  P    S  S+ S   YP      S PPLLP PR+  S +   R   S+PR   + SL +   TK   ++    A  ++    +RT S       
Subjt:  GGLLQTPPRFLSAPSFHSHQFYPFIQQQQSPPPLLP-PRMPPSILRPHRSLPSQPR---SHSLKKSKSTKRDKDS----AAAVDRRISSRTFSAAAGKRV

Query:  VR--VEELEKLSGCLFAVISPPPSSLPLPKFSLRPAKLNCNVEAAGADDGAAAADDLRRLLRLR
        +R   E  +   G    ++SPPPSSLP+P+FS++P KL CNVEAAG  D   A +++RR+L+LR
Subjt:  VR--VEELEKLSGCLFAVISPPPSSLPLPKFSLRPAKLNCNVEAAGADDGAAAADDLRRLLRLR

AT3G21570.1 unknown protein

4.9e-04

49.06

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Query:  SGCLFAVISPPPSSLPLPKFSLRPAKLNCNVEAAGADDGAAAADDLRRLLRLR
        +G     +SP PSSLPLP FS + AK    V     DD  +A+ DLRRLLRL+
Subjt:  SGCLFAVISPPPSSLPLPKFSLRPAKLNCNVEAAGADDGAAAADDLRRLLRLR

Sequences

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CDS sequence

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ATGGCCGATTCCTATTTTCTCGATCGGCCGGCTGCCTTCGGCTACAACCCCACCAGAATTTCAAATAATTTTCACCTTGAAAATATCGCTGCCTCCGGTTACACCCACGG
CGGACTCTTGCAAACGCCGCCGCGGTTCCTCTCAGCTCCGTCATTCCACAGCCACCAATTTTACCCTTTCATCCAGCAACAACAATCACCACCGCCTCTCCTTCCACCGC
GGATGCCGCCGAGTATTCTACGGCCCCACCGTTCTCTTCCTTCTCAACCCCGATCCCACTCTCTTAAGAAATCCAAATCCACAAAAAGAGACAAAGACTCGGCGGCGGCG
GTTGATCGGAGGATTTCTTCTAGAACTTTCTCGGCGGCGGCCGGGAAGAGGGTGGTTAGAGTAGAGGAATTGGAGAAATTGTCGGGGTGTTTATTTGCGGTAATTTCTCC
GCCGCCCAGCAGTTTGCCGCTGCCCAAATTTTCTCTGAGGCCGGCGAAGCTTAATTGCAATGTGGAGGCTGCCGGAGCCGACGACGGAGCCGCCGCCGCGGACGATCTCC
GGCGACTTCTTCGCCTTCGTTGA

mRNA sequence

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Protein sequence

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MADSYFLDRPAAFGYNPTRISNNFHLENIAASGYTHGGLLQTPPRFLSAPSFHSHQFYPFIQQQQSPPPLLPPRMPPSILRPHRSLPSQPRSHSLKKSKSTKRDKDSAAA
VDRRISSRTFSAAAGKRVVRVEELEKLSGCLFAVISPPPSSLPLPKFSLRPAKLNCNVEAAGADDGAAAADDLRRLLRLR

Lsi04G017590 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome