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Lsi04G017630 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G017630
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSkp1_POZ domain-containing protein
Genome locationchr04:24880695..24884497
RNA-Seq ExpressionLsi04G017630
SyntenyLsi04G017630
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2297961.1 hypothetical protein GH714_006773 [Hevea brasiliensis]7.3e-0558Show/hide
Query:  ATTPETCGQDIEVPEITLKSGNFVACGVELESLPSHAARMFTPGADMSGC
        A  PETCG  +EVPE TL SG      V   SLP HAA M TPGA +SGC
Subjt:  ATTPETCGQDIEVPEITLKSGNFVACGVELESLPSHAARMFTPGADMSGC
TrEMBL top hitse value%identityAlignment
A0A0P0VTB6 Os03g0158800 protein8.7e-0449.02Show/hide
Query:  ATTPETCGQDIEVPEITLKSGNFVACGVEL-ESLPSHAARMFTPGADMSGC
        AT PETCG D++VPE        ++ G+ + + +  HAARMFTPGA  SGC
Subjt:  ATTPETCGQDIEVPEITLKSGNFVACGVEL-ESLPSHAARMFTPGADMSGC
A0A1D6JP44 Uncharacterized protein8.7e-0450.98Show/hide
Query:  ATTPETCGQDIEVPEITLKSGNFVACGVEL-ESLPSHAARMFTPGADMSGC
        A  PETCG D++VPE    S   ++ G+ + + L  HAARMFTPGA  SGC
Subjt:  ATTPETCGQDIEVPEITLKSGNFVACGVEL-ESLPSHAARMFTPGADMSGC
A0A6A6L950 Skp1_POZ domain-containing protein3.5e-0558Show/hide
Query:  ATTPETCGQDIEVPEITLKSGNFVACGVELESLPSHAARMFTPGADMSGC
        A  PETCG  +EVPE TL SG      V   SLP HAA M TPGA +SGC
Subjt:  ATTPETCGQDIEVPEITLKSGNFVACGVELESLPSHAARMFTPGADMSGC
Q0DUZ9 Os03g0158800 protein8.7e-0449.02Show/hide
Query:  ATTPETCGQDIEVPEITLKSGNFVACGVEL-ESLPSHAARMFTPGADMSGC
        AT PETCG D++VPE        ++ G+ + + +  HAARMFTPGA  SGC
Subjt:  ATTPETCGQDIEVPEITLKSGNFVACGVEL-ESLPSHAARMFTPGADMSGC
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTTATGGATTATGATCAATGAGGACGACGAGATTCTCATCCCAAATGTGAGAGGCTATTTGAGGGATTGTCCTTGCCAATGGAGAAAAACGTCCGATGAGATGCC
GCACTATTTTGACATTGAGAATGATTATACTCCAAAGGAAGGAGAACCAAGGAGAGGAGAAAAGTTTACTATAATGAAAGATTCAATTCTCATATCCCTATCATCTTATT
ATACCCCTCGAAAGTGCCCCACCATCAGAAAAGTTGAAATTCAGCTATGGAGGCTGTTCAATCAGCTAATCTTATGGCTCACTACTCTTACCAGTGACGACAAATGGACT
CCGAACTCGATGTGCGTCTACACTGACTGTGTAAACTGTATCGCCATCGCCACCAACATTTGTAACTGTTCTGATTACTTTCTTGCTTTCCTTGCCTTTCAATTCGGATA
CTGCTATTGTTGGGCCACTACGCCAGAGACATGCGGGCAAGACATTGAAGTTCCTGAGATCACATTGAAGAGTGGCAACTTTGTTGCTTGTGGAGTAGAGCTTGAATCAT
TGCCAAGCCACGCTGCAAGAATGTTCACTCCTGGTGCTGATATGTCCGGCTGCATCACAATTAACTCTCAAATTCAGCAAACTCAATTAGCCACTGAAGATCAGAAAGTT
CAAGCTACTAAAGAAGATATGAGCTTGAAGCTCACTTCATATCCAAGTTCTCTATCTAGCTTGATTAAACAAAGAGTGATTAAGTCTTACCCGCTTGAGTTAACATAG
mRNA sequenceShow/hide mRNA sequence
ATGGACTTATGGATTATGATCAATGAGGACGACGAGATTCTCATCCCAAATGTGAGAGGCTATTTGAGGGATTGTCCTTGCCAATGGAGAAAAACGTCCGATGAGATGCC
GCACTATTTTGACATTGAGAATGATTATACTCCAAAGGAAGGAGAACCAAGGAGAGGAGAAAAGTTTACTATAATGAAAGATTCAATTCTCATATCCCTATCATCTTATT
ATACCCCTCGAAAGTGCCCCACCATCAGAAAAGTTGAAATTCAGCTATGGAGGCTGTTCAATCAGCTAATCTTATGGCTCACTACTCTTACCAGTGACGACAAATGGACT
CCGAACTCGATGTGCGTCTACACTGACTGTGTAAACTGTATCGCCATCGCCACCAACATTTGTAACTGTTCTGATTACTTTCTTGCTTTCCTTGCCTTTCAATTCGGATA
CTGCTATTGTTGGGCCACTACGCCAGAGACATGCGGGCAAGACATTGAAGTTCCTGAGATCACATTGAAGAGTGGCAACTTTGTTGCTTGTGGAGTAGAGCTTGAATCAT
TGCCAAGCCACGCTGCAAGAATGTTCACTCCTGGTGCTGATATGTCCGGCTGCATCACAATTAACTCTCAAATTCAGCAAACTCAATTAGCCACTGAAGATCAGAAAGTT
CAAGCTACTAAAGAAGATATGAGCTTGAAGCTCACTTCATATCCAAGTTCTCTATCTAGCTTGATTAAACAAAGAGTGATTAAGTCTTACCCGCTTGAGTTAACATAG
Protein sequenceShow/hide protein sequence
MDLWIMINEDDEILIPNVRGYLRDCPCQWRKTSDEMPHYFDIENDYTPKEGEPRRGEKFTIMKDSILISLSSYYTPRKCPTIRKVEIQLWRLFNQLILWLTTLTSDDKWT
PNSMCVYTDCVNCIAIATNICNCSDYFLAFLAFQFGYCYCWATTPETCGQDIEVPEITLKSGNFVACGVELESLPSHAARMFTPGADMSGCITINSQIQQTQLATEDQKV
QATKEDMSLKLTSYPSSLSSLIKQRVIKSYPLELT