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Lsi04G017960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G017960
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMediator of RNA polymerase II transcription subunit 26
Genome locationchr04:25190578..25190877
RNA-Seq ExpressionLsi04G017960
SyntenyLsi04G017960
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591229.1 hypothetical protein SDJN03_13575, partial [Cucurbita argyrosperma subsp. sororia]2.5e-3885.86Show/hide
Query:  MESNQKIEMEREQQRREESKKMEQQQPHYISPMKPLTESAYGGGMYGAEEGEQRSLQKKPASETQSADGPAEAEMKPKHAPPPSSGDRDIDITGQSYFQ
        ME+NQK+EMEREQQRREE+KK+EQ+ PHYISPM+PLTESAYGGGMYG EEG+Q+SLQKKPAS+TQSADGP E+ MKPKHAPPPSSGDRDIDITGQSYFQ
Subjt:  MESNQKIEMEREQQRREESKKMEQQQPHYISPMKPLTESAYGGGMYGAEEGEQRSLQKKPASETQSADGPAEAEMKPKHAPPPSSGDRDIDITGQSYFQ
XP_008452943.1 PREDICTED: uncharacterized protein LOC103493802 [Cucumis melo]1.1e-3381.19Show/hide
Query:  MESNQKIEMEREQQRREESKKMEQQQPHYISPMKPLTESAYGGGMYGAEEGEQRSLQKK--PASETQSADGPAEAEMKPKHAPPPSSGDRDIDITGQSYF
        ME+ Q+IEMEREQQRRE+SKK+EQ+ P+YISPM+PLTESAYGGGMYG EEG+Q SLQ K  PAS+TQSADGP EAEMK KH PPPSSGDRDIDITGQSYF
Subjt:  MESNQKIEMEREQQRREESKKMEQQQPHYISPMKPLTESAYGGGMYGAEEGEQRSLQKK--PASETQSADGPAEAEMKPKHAPPPSSGDRDIDITGQSYF

Query:  Q
        Q
Subjt:  Q
XP_022132786.1 uncharacterized protein LOC111005558 [Momordica charantia]3.1e-3685.86Show/hide
Query:  MESNQKIEMEREQQRREESKKMEQQQPHYISPMKPLTESAYGGGMYGAEEGEQRSLQKKPASETQSADGPAEAEMKPKHAPPPSSGDRDIDITGQSYFQ
        ME NQKIEMERE+QRREE+KKMEQQ P  ISPM+PLTESAYGGGMYGAEEG+Q+ L+KKPAS+TQSADGP EA MKPKHAPPPSSGDRDIDITGQSYFQ
Subjt:  MESNQKIEMEREQQRREESKKMEQQQPHYISPMKPLTESAYGGGMYGAEEGEQRSLQKKPASETQSADGPAEAEMKPKHAPPPSSGDRDIDITGQSYFQ
XP_022936823.1 uncharacterized protein LOC111443294 [Cucurbita moschata]8.7e-3986.87Show/hide
Query:  MESNQKIEMEREQQRREESKKMEQQQPHYISPMKPLTESAYGGGMYGAEEGEQRSLQKKPASETQSADGPAEAEMKPKHAPPPSSGDRDIDITGQSYFQ
        ME+NQK+EMEREQQRREE+KK+EQ+ PHYISPM+PLTESAYGGGMYGAEEG+Q+SLQKKPAS+TQSADGP E+ MKPKHAPPPSSGDRDIDITGQSYFQ
Subjt:  MESNQKIEMEREQQRREESKKMEQQQPHYISPMKPLTESAYGGGMYGAEEGEQRSLQKKPASETQSADGPAEAEMKPKHAPPPSSGDRDIDITGQSYFQ
XP_038899828.1 uncharacterized protein LOC120087055 [Benincasa hispida]2.4e-4193.94Show/hide
Query:  MESNQKIEMEREQQRREESKKMEQQQPHYISPMKPLTESAYGGGMYGAEEGEQRSLQKKPASETQSADGPAEAEMKPKHAPPPSSGDRDIDITGQSYFQ
        MESNQK+EMEREQQRREESKKMEQQ PHYISPMKPLTESAYGGGMYG EEGE+RSLQKKPASETQSADGP E EMKPKHAPPPSSGDRDIDITGQSYFQ
Subjt:  MESNQKIEMEREQQRREESKKMEQQQPHYISPMKPLTESAYGGGMYGAEEGEQRSLQKKPASETQSADGPAEAEMKPKHAPPPSSGDRDIDITGQSYFQ
TrEMBL top hitse value%identityAlignment
A0A0A0L393 Uncharacterized protein1.8e-2977.45Show/hide
Query:  MESNQKIEMEREQQRREESKKMEQQQPHYISPMKPLTESAYGGGMYGAEE-GEQRSLQ--KKPASETQSADGPAEAEMKPKHAPPPSSGDRDIDITGQSY
        ME+ QKIEMEREQQRREESKK+EQ+ P+YIS M+PLTE AYGGGMYG ++ G+Q SLQ  K PAS TQSADGP  AEMK KH PPPSSGDRDIDITGQSY
Subjt:  MESNQKIEMEREQQRREESKKMEQQQPHYISPMKPLTESAYGGGMYGAEE-GEQRSLQ--KKPASETQSADGPAEAEMKPKHAPPPSSGDRDIDITGQSY

Query:  FQ
        FQ
Subjt:  FQ
A0A1S3BV26 uncharacterized protein LOC1034938025.3e-3481.19Show/hide
Query:  MESNQKIEMEREQQRREESKKMEQQQPHYISPMKPLTESAYGGGMYGAEEGEQRSLQKK--PASETQSADGPAEAEMKPKHAPPPSSGDRDIDITGQSYF
        ME+ Q+IEMEREQQRRE+SKK+EQ+ P+YISPM+PLTESAYGGGMYG EEG+Q SLQ K  PAS+TQSADGP EAEMK KH PPPSSGDRDIDITGQSYF
Subjt:  MESNQKIEMEREQQRREESKKMEQQQPHYISPMKPLTESAYGGGMYGAEEGEQRSLQKK--PASETQSADGPAEAEMKPKHAPPPSSGDRDIDITGQSYF

Query:  Q
        Q
Subjt:  Q
A0A6J1BT98 uncharacterized protein LOC1110055581.5e-3685.86Show/hide
Query:  MESNQKIEMEREQQRREESKKMEQQQPHYISPMKPLTESAYGGGMYGAEEGEQRSLQKKPASETQSADGPAEAEMKPKHAPPPSSGDRDIDITGQSYFQ
        ME NQKIEMERE+QRREE+KKMEQQ P  ISPM+PLTESAYGGGMYGAEEG+Q+ L+KKPAS+TQSADGP EA MKPKHAPPPSSGDRDIDITGQSYFQ
Subjt:  MESNQKIEMEREQQRREESKKMEQQQPHYISPMKPLTESAYGGGMYGAEEGEQRSLQKKPASETQSADGPAEAEMKPKHAPPPSSGDRDIDITGQSYFQ
A0A6J1FEB2 uncharacterized protein LOC1114432944.2e-3986.87Show/hide
Query:  MESNQKIEMEREQQRREESKKMEQQQPHYISPMKPLTESAYGGGMYGAEEGEQRSLQKKPASETQSADGPAEAEMKPKHAPPPSSGDRDIDITGQSYFQ
        ME+NQK+EMEREQQRREE+KK+EQ+ PHYISPM+PLTESAYGGGMYGAEEG+Q+SLQKKPAS+TQSADGP E+ MKPKHAPPPSSGDRDIDITGQSYFQ
Subjt:  MESNQKIEMEREQQRREESKKMEQQQPHYISPMKPLTESAYGGGMYGAEEGEQRSLQKKPASETQSADGPAEAEMKPKHAPPPSSGDRDIDITGQSYFQ
A0A6J1IJZ9 uncharacterized protein LOC1114769714.2e-3986.87Show/hide
Query:  MESNQKIEMEREQQRREESKKMEQQQPHYISPMKPLTESAYGGGMYGAEEGEQRSLQKKPASETQSADGPAEAEMKPKHAPPPSSGDRDIDITGQSYFQ
        ME+NQK+EMEREQQRREE+KK+EQ+ PHYISPM+PLTESAYGGGMYGAEEG+Q+SLQKKPAS+TQSADGP E+ MKPKHAPPPSSGDRDIDITGQSYFQ
Subjt:  MESNQKIEMEREQQRREESKKMEQQQPHYISPMKPLTESAYGGGMYGAEEGEQRSLQKKPASETQSADGPAEAEMKPKHAPPPSSGDRDIDITGQSYFQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G42290.1 transcription activator-related3.8e-1649.09Show/hide
Query:  IEMEREQQRREESKKME--QQQPHYISPMKPLTESAYGGGMYGAE--------EGEQRSLQKK------PASETQSADGPAEAE-MKPKHAPPPSSGDRD
        +E E +Q+  E   K E  Q QP YIS M+P+T  AYGGG+YG +        E E ++++K+      PAS+TQSADGP E + + PKH  P SSGDRD
Subjt:  IEMEREQQRREESKKME--QQQPHYISPMKPLTESAYGGGMYGAE--------EGEQRSLQKK------PASETQSADGPAEAE-MKPKHAPPPSSGDRD

Query:  IDITGQSYFQ
        +DITGQSY Q
Subjt:  IDITGQSYFQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAGCAATCAAAAGATAGAGATGGAGAGGGAGCAGCAGAGGCGAGAAGAATCGAAGAAGATGGAGCAACAACAGCCGCACTATATTTCTCCGATGAAGCCATTGAC
GGAAAGTGCTTACGGCGGAGGAATGTACGGCGCCGAGGAAGGCGAACAGCGAAGCCTGCAGAAGAAACCTGCGAGCGAGACGCAGAGCGCCGATGGACCTGCTGAAGCCG
AGATGAAGCCGAAGCATGCGCCTCCACCGTCCTCCGGCGACAGAGACATCGACATCACCGGGCAATCGTATTTCCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAAGCAATCAAAAGATAGAGATGGAGAGGGAGCAGCAGAGGCGAGAAGAATCGAAGAAGATGGAGCAACAACAGCCGCACTATATTTCTCCGATGAAGCCATTGAC
GGAAAGTGCTTACGGCGGAGGAATGTACGGCGCCGAGGAAGGCGAACAGCGAAGCCTGCAGAAGAAACCTGCGAGCGAGACGCAGAGCGCCGATGGACCTGCTGAAGCCG
AGATGAAGCCGAAGCATGCGCCTCCACCGTCCTCCGGCGACAGAGACATCGACATCACCGGGCAATCGTATTTCCAGTAG
Protein sequenceShow/hide protein sequence
MESNQKIEMEREQQRREESKKMEQQQPHYISPMKPLTESAYGGGMYGAEEGEQRSLQKKPASETQSADGPAEAEMKPKHAPPPSSGDRDIDITGQSYFQ