; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G018020 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G018020
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSmall nuclear ribonucleoprotein Sm D3
Genome locationchr04:25232725..25235670
RNA-Seq ExpressionLsi04G018020
SyntenyLsi04G018020
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0097525 - spliceosomal snRNP complex (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027141 - Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
IPR034099 - Small nuclear ribonucleoprotein Sm D3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064637.1 small nuclear ribonucleoprotein SmD3a-like [Cucumis melo var. makuwa]2.7e-4750Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI
        MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK                                               
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI

Query:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV
                                                                                           DGKVSQLEHVFIRGSKV
Subjt:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV

Query:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
        RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGA PSGRR
Subjt:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

KAF3629783.1 Small nuclear ribonucleoprotein Sm D3 [Capsicum annuum]1.8e-5150Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMY----VPTPKCSNCLM
        MSRSLGIPVKLLHEA GH+V+VE+KSGELYRGSM+ECEDNWNCQLE+ITYTAK        +  +Y    KG ++ + P  P ++     P PK    + 
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMY----VPTPKCSNCLM

Query:  RLKIGENMKRGHSLVSNGDRNFIP--SLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVF
         L           + S     F P   +      R K  +        NN +    + +     G              V  +++    DG+VSQLEHVF
Subjt:  RLKIGENMKRGHSLVSNGDRNFIP--SLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVF

Query:  IRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
        IRGSKVRFM+IPDMLKNAPMFKRL+ARIKGKG+SLGVGRGRA+AMRAKAQAAGRG+APGRG  P  RR
Subjt:  IRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

THU54077.1 hypothetical protein C4D60_Mb10t21220 [Musa balbisiana]6.0e-4752.09Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI
        MSRSLGIPVKLLHEAAGHVV+VELKSGELYRGSMIECEDNWNCQLENITYTAK +           F +    ++ F                       
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI

Query:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV
                           PS             G  I   + +P  + LL           LV +   + L +  L S+S  DGKVSQLEHVFIRGSKV
Subjt:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV

Query:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAP-GRGAAPSGRR
        RFMVIPDMLKNAPMFKRLDARI+GKG++LGVGRGRAVAMRA+AQAAGRG AP GRG  P  RR
Subjt:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAP-GRGAAPSGRR

XP_008452950.1 PREDICTED: small nuclear ribonucleoprotein SmD3a-like [Cucumis melo]2.7e-4750Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI
        MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK                                               
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI

Query:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV
                                                                                           DGKVSQLEHVFIRGSKV
Subjt:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV

Query:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
        RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGA PSGRR
Subjt:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

XP_038896140.1 small nuclear ribonucleoprotein SmD3a-like [Benincasa hispida]7.1e-4850.38Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI
        MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK                                               
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI

Query:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV
                                                                                           DGKVSQLEHVFIRGSKV
Subjt:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV

Query:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
        RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
Subjt:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

TrEMBL top hitse value%identityAlignment
A0A0A0L5W4 Small nuclear ribonucleoprotein Sm D36.5e-4749.62Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI
        MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK                                               
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI

Query:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV
                                                                                           DGKVSQLEHVFIRGSKV
Subjt:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV

Query:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
         FMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGA PSGRR
Subjt:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

A0A1S3BVV0 Small nuclear ribonucleoprotein Sm D31.3e-4750Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI
        MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK                                               
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI

Query:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV
                                                                                           DGKVSQLEHVFIRGSKV
Subjt:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV

Query:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
        RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGA PSGRR
Subjt:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

A0A4S8IYM3 Small nuclear ribonucleoprotein Sm D32.9e-4752.09Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI
        MSRSLGIPVKLLHEAAGHVV+VELKSGELYRGSMIECEDNWNCQLENITYTAK +           F +    ++ F                       
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI

Query:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV
                           PS             G  I   + +P  + LL           LV +   + L +  L S+S  DGKVSQLEHVFIRGSKV
Subjt:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV

Query:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAP-GRGAAPSGRR
        RFMVIPDMLKNAPMFKRLDARI+GKG++LGVGRGRAVAMRA+AQAAGRG AP GRG  P  RR
Subjt:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAP-GRGAAPSGRR

A0A5D3D8Q1 Small nuclear ribonucleoprotein Sm D31.3e-4750Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI
        MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK                                               
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI

Query:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV
                                                                                           DGKVSQLEHVFIRGSKV
Subjt:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV

Query:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
        RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGA PSGRR
Subjt:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

A0A6J1DDX8 Small nuclear ribonucleoprotein Sm D35.5e-4649.24Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI
        MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK                                               
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI

Query:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV
                                                                                           DGKVSQLEHVFIRGSKV
Subjt:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV

Query:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
        RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSA GRGA PS RR
Subjt:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

SwissProt top hitse value%identityAlignment
P62318 Small nuclear ribonucleoprotein Sm D32.0e-1627.8Show/hide
Query:  SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGEN
        S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T            YR                                      
Subjt:  SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGEN

Query:  MKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFM
                                                                                        DG+V+QLE V+IRGSK+RF+
Subjt:  MKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFM

Query:  VIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
        ++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   GRG     RR
Subjt:  VIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

P62320 Small nuclear ribonucleoprotein Sm D32.0e-1627.8Show/hide
Query:  SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGEN
        S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T            YR                                      
Subjt:  SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGEN

Query:  MKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFM
                                                                                        DG+V+QLE V+IRGSK+RF+
Subjt:  MKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFM

Query:  VIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
        ++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   GRG     RR
Subjt:  VIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

P62323 Small nuclear ribonucleoprotein Sm D32.0e-1627.8Show/hide
Query:  SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGEN
        S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T            YR                                      
Subjt:  SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGEN

Query:  MKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFM
                                                                                        DG+V+QLE V+IRGSK+RF+
Subjt:  MKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFM

Query:  VIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
        ++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   GRG     RR
Subjt:  VIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

Q9LM92 Small nuclear ribonucleoprotein SmD3b2.9e-3642.59Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI
        MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAK                                               
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI

Query:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV
                                                                                           DGKVSQLEHVFIRGSKV
Subjt:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV

Query:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAK-AQAAGRGSAPGRGAAPSGRR
        RFMVIPD+LK+APMFKRLDARIKGK +SLGVGRGR  AMR K A   GRG+  GRGA P  RR
Subjt:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAK-AQAAGRGSAPGRGAAPSGRR

Q9S7E6 Small nuclear ribonucleoprotein SmD3a1.1e-3541.6Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI
        MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAK                                               
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI

Query:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV
                                                                                           DGKVSQLEHVFIRGS V
Subjt:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV

Query:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
        RF+VIPDMLKNAPMFK  D R KGK ASLGVGRGR  AMRAK    GRG+  GRGA P  RR
Subjt:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

Arabidopsis top hitse value%identityAlignment
AT1G20580.1 Small nuclear ribonucleoprotein family protein2.1e-3742.59Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI
        MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAK                                               
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI

Query:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV
                                                                                           DGKVSQLEHVFIRGSKV
Subjt:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV

Query:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAK-AQAAGRGSAPGRGAAPSGRR
        RFMVIPD+LK+APMFKRLDARIKGK +SLGVGRGR  AMR K A   GRG+  GRGA P  RR
Subjt:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAK-AQAAGRGSAPGRGAAPSGRR

AT1G20600.1 AP2/B3-like transcriptional factor family protein8.8e-04100Show/hide
Query:  TDGKVSQLEHVFIRGSKVR
        TDGKVSQLEHVFIRGSKVR
Subjt:  TDGKVSQLEHVFIRGSKVR

AT1G76300.1 snRNP core protein SMD37.9e-3741.6Show/hide
Query:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI
        MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAK                                               
Subjt:  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKI

Query:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV
                                                                                           DGKVSQLEHVFIRGS V
Subjt:  GENMKRGHSLVSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKV

Query:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR
        RF+VIPDMLKNAPMFK  D R KGK ASLGVGRGR  AMRAK    GRG+  GRGA P  RR
Subjt:  RFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR

AT5G27720.1 Small nuclear ribonucleoprotein family protein1.4e-0440.43Show/hide
Query:  IPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK
        +P+ LL  A GH + VELK+GE Y G ++ C+   N  L  +  T+K
Subjt:  IPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGCCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAGCTTTACAGGGGAAGTATGATCGAGTG
TGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGAAAATTTCCGGGAATAGGAAACACTCTCCATATCGTTACTTTCAACATGTAAAAGGAACAA
TAATCGCATTTAAGCCCCACAGACCTGACATGTATGTTCCAACCCCAAAATGTAGCAATTGTCTAATGAGACTGAAAATCGGAGAAAACATGAAAAGAGGGCATTCACTG
GTCAGCAATGGTGACCGCAACTTCATACCCAGTCTTTGGCACCACGACTCAAGTCGGTGCAAACTTTCTCAAGGTTGTAACATTTTTGGAGGAGAGAATAATCCTGATCT
TATGGATTTGCTTTTCCGTATCTTCCGACTTCTAGGCTTGGCTTCGTTGGTTTTGTTGCTGTGTACCATGCTTCTGGTTGTTCTGAATCTCAAAAGTGCATCTGGGACAG
ATGGGAAGGTCTCACAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTAAAGAATGCTCCAATGTTCAAGCGTCTTGATGCT
AGAATTAAAGGTAAGGGCGCCTCACTTGGTGTTGGCAGGGGCAGGGCTGTTGCTATGCGAGCTAAAGCCCAAGCTGCTGGCCGTGGAAGTGCACCTGGTCGGGGTGCTGC
GCCATCTGGCCGAAGGTGA
mRNA sequenceShow/hide mRNA sequence
TTGCATTTTGCAAGTTCAAGGCTTAAAGAAGGTGAGGGGAGCGTTAGGGTTTTAGAGGGAGATTTGAGATTTGTGATTTGCAGAGAGTAGCCATGAGCAGGAGCTTGGGA
ATTCCAGTGAAGCTACTCCATGAGGCCGCGGGCCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAGCTTTACAGGGGAAGTATGATCGAGTGTGAGGATAACTGGAACTG
CCAGCTCGAAAACATCACCTACACTGCTAAGAAAATTTCCGGGAATAGGAAACACTCTCCATATCGTTACTTTCAACATGTAAAAGGAACAATAATCGCATTTAAGCCCC
ACAGACCTGACATGTATGTTCCAACCCCAAAATGTAGCAATTGTCTAATGAGACTGAAAATCGGAGAAAACATGAAAAGAGGGCATTCACTGGTCAGCAATGGTGACCGC
AACTTCATACCCAGTCTTTGGCACCACGACTCAAGTCGGTGCAAACTTTCTCAAGGTTGTAACATTTTTGGAGGAGAGAATAATCCTGATCTTATGGATTTGCTTTTCCG
TATCTTCCGACTTCTAGGCTTGGCTTCGTTGGTTTTGTTGCTGTGTACCATGCTTCTGGTTGTTCTGAATCTCAAAAGTGCATCTGGGACAGATGGGAAGGTCTCACAAC
TTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTAAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAGAATTAAAGGTAAGGGC
GCCTCACTTGGTGTTGGCAGGGGCAGGGCTGTTGCTATGCGAGCTAAAGCCCAAGCTGCTGGCCGTGGAAGTGCACCTGGTCGGGGTGCTGCGCCATCTGGCCGAAGGTG
ATGAAACCATGAATATAGTTTGTTATATCCTTAGTTCAAGCCTAGAAAGTCATTGGAATATCGACCATCAAGTTTCATTAGTTCCGGTATTGACATCCTCAACATTGAAC
AAGGCTATGCATTGTTCATTTTGTTGAAAATGGGCGATTGACCATAATGTCATCAACTTGATAATCTACTTTTTCCTTGAGCCCATTTTATGTTGAGATCAAACTTTCCT
TTACCCCCATTTACATCTTTGTTATGTATGTATCGAATGTTCTTTGCATCTTATCACCATAGAAGTATTGTCTTTGTGCCATTTATTCTACTTTAATCGTTGGCTGTTCA
ATTTACTTGGAGATATTACCTTCCTCAGAACAAATTCCCACTTTCACAATCATCACCATCATAGTTCGAAAA
Protein sequenceShow/hide protein sequence
MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKKISGNRKHSPYRYFQHVKGTIIAFKPHRPDMYVPTPKCSNCLMRLKIGENMKRGHSL
VSNGDRNFIPSLWHHDSSRCKLSQGCNIFGGENNPDLMDLLFRIFRLLGLASLVLLLCTMLLVVLNLKSASGTDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDA
RIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSGRR