; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G018070 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G018070
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionNiemann-Pick C1 protein
Genome locationchr04:25294658..25296969
RNA-Seq ExpressionLsi04G018070
SyntenyLsi04G018070
Gene Ontology termsGO:0006869 - lipid transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0005319 - lipid transporter activity (molecular function)
InterPro domainsIPR003392 - Protein patched/dispatched


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008452965.1 PREDICTED: Niemann-Pick C1 protein isoform X2 [Cucumis melo]1.8e-5990.91Show/hide
Query:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY
        L+++  +   +GVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYF +Y
Subjt:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY

Query:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR
        LALVLLGFLHGLVFLPV+LSLFGPPSRCVFVEQQDNRPSTSSR
Subjt:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR

XP_038897902.1 NPC intracellular cholesterol transporter 1-like isoform X1 [Benincasa hispida]2.1e-6092.31Show/hide
Query:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY
        L+++  +   +GVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQ+Y
Subjt:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY

Query:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR
        LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR
Subjt:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR

XP_038897903.1 NPC intracellular cholesterol transporter 1-like isoform X2 [Benincasa hispida]2.1e-6092.31Show/hide
Query:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY
        L+++  +   +GVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQ+Y
Subjt:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY

Query:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR
        LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR
Subjt:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR

XP_038897904.1 NPC intracellular cholesterol transporter 1-like isoform X3 [Benincasa hispida]2.1e-6092.31Show/hide
Query:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY
        L+++  +   +GVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQ+Y
Subjt:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY

Query:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR
        LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR
Subjt:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR

XP_038897906.1 NPC intracellular cholesterol transporter 1-like isoform X4 [Benincasa hispida]2.1e-6092.31Show/hide
Query:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY
        L+++  +   +GVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQ+Y
Subjt:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY

Query:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR
        LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR
Subjt:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR

TrEMBL top hitse value%identityAlignment
A0A0A0L4L2 SSD domain-containing protein2.5e-5990.21Show/hide
Query:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY
        L+++  +   +GVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYF +Y
Subjt:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY

Query:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR
        LALVLLGFLHGLVFLPV+LSLFGPPSRCVFVEQQDNRPSTSS+
Subjt:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR

A0A1S3BV25 Niemann-Pick C1 protein isoform X18.6e-6090.91Show/hide
Query:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY
        L+++  +   +GVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYF +Y
Subjt:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY

Query:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR
        LALVLLGFLHGLVFLPV+LSLFGPPSRCVFVEQQDNRPSTSSR
Subjt:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR

A0A1S3BVW5 Niemann-Pick C1 protein isoform X28.6e-6090.91Show/hide
Query:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY
        L+++  +   +GVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYF +Y
Subjt:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY

Query:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR
        LALVLLGFLHGLVFLPV+LSLFGPPSRCVFVEQQDNRPSTSSR
Subjt:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR

A0A5A7V942 Niemann-Pick C1 protein isoform X18.6e-6090.91Show/hide
Query:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY
        L+++  +   +GVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYF +Y
Subjt:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY

Query:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR
        LALVLLGFLHGLVFLPV+LSLFGPPSRCVFVEQQDNRPSTSSR
Subjt:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR

A0A5D3D8Z1 Niemann-Pick C1 protein isoform X18.6e-6090.91Show/hide
Query:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY
        L+++  +   +GVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYF +Y
Subjt:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY

Query:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR
        LALVLLGFLHGLVFLPV+LSLFGPPSRCVFVEQQDNRPSTSSR
Subjt:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSR

SwissProt top hitse value%identityAlignment
O15118 NPC intracellular cholesterol transporter 11.3e-2857.72Show/hide
Query:  ISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVS-SGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMYL
        I+  L    GVM +  I LNA+S+VNLVMS GI+VEFC H+T AF+VS  G R +R +EAL+ MG+SV SGITLTK  G++VL F+++++F ++YF+MYL
Subjt:  ISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVS-SGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMYL

Query:  ALVLLGFLHGLVFLPVMLSLFGP
        A+VLLG  HGL+FLPV+LS  GP
Subjt:  ALVLLGFLHGLVFLPVMLSLFGP

O35604 NPC intracellular cholesterol transporter 14.9e-2856Show/hide
Query:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSS-GDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQM
        + I+  L    GVM +  I LNA+S+VNLVMS GI+VEFC H+T AF++S+ G R  R +EAL+ MG+SV SGITLTK  G++VL F+++++F ++YF+M
Subjt:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSS-GDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQM

Query:  YLALVLLGFLHGLVFLPVMLSLFGP
        YLA+VLLG  HGL+FLPV+LS  GP
Subjt:  YLALVLLGFLHGLVFLPVMLSLFGP

P56941 NPC intracellular cholesterol transporter 14.9e-2856.91Show/hide
Query:  ISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSS-GDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMYL
        I+  L    GVM +  I LNA+S+VNLVMS GI+VEFC H+T AF++S+ G R  R +EAL+ MG+SV SGITLTK  G++VL F+++++F ++YF+MYL
Subjt:  ISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSS-GDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMYL

Query:  ALVLLGFLHGLVFLPVMLSLFGP
        A+VLLG  HGL+FLPV+LS  GP
Subjt:  ALVLLGFLHGLVFLPVMLSLFGP

Q12200 NPC intracellular sterol transporter 1-related protein 14.7e-2349.15Show/hide
Query:  VMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSV----SSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMYLALVLLGF
        +MA+L I LNA+S+VNL++ VG+ VEFCVH+  +F+V    +  D N R+  +L+T+G SV+ GITLTK +GV VL F+++++F V+YF+M+  L+++  
Subjt:  VMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSV----SSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMYLALVLLGF

Query:  LHGLVFLPVMLSLFGPPS
        LH L+FLP +LSLFG  S
Subjt:  LHGLVFLPVMLSLFGPPS

Q9VRC9 NPC intracellular cholesterol transporter 1 homolog 1b6.0e-2650.76Show/hide
Query:  FIPNFLIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVY
        FI  F++I   L   LG+M   +I LNAIS+VNLV+ VGI VEF  H+  +F  + G   +R + +L+  G+SVLSGITLTK  G++VL FS +++F V+
Subjt:  FIPNFLIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVY

Query:  YFQMYLALVLLGFLHGLVFLPVMLSLFGPPSR
        YF+MYL +VL+G  HGL+ LPV+LSL GPP +
Subjt:  YFQMYLALVLLGFLHGLVFLPVMLSLFGPPSR

Arabidopsis top hitse value%identityAlignment
AT1G42470.1 Patched family protein2.5e-1170.83Show/hide
Query:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFS
        L+I+  +   LGVMA+ +IQLNA+SVVNL+MSVGIAVEFCVH+THAFS
Subjt:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFS

AT4G38350.1 Patched family protein1.1e-4668.06Show/hide
Query:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY
        L++   L   +G+M IL IQLNA+SVVNL+MS+GIAVEFCVH++HAF +SSGDR  R +EAL TMGASV SGITLTKLVGV+VLCF+R+E+FVVYYFQMY
Subjt:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY

Query:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSRL
        LALV++GFLHGLVFLPV+LSL GPP   + +EQQ    ++SS L
Subjt:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSRL

AT4G38350.2 Patched family protein1.1e-4668.06Show/hide
Query:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY
        L++   L   +G+M IL IQLNA+SVVNL+MS+GIAVEFCVH++HAF +SSGDR  R +EAL TMGASV SGITLTKLVGV+VLCF+R+E+FVVYYFQMY
Subjt:  LIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMY

Query:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSRL
        LALV++GFLHGLVFLPV+LSL GPP   + +EQQ    ++SS L
Subjt:  LALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGTGCGGTTTTTATTGTTAGTGATGGTGTTTCTGGCATTGAAGTAGACGGATATTCTTCTCTTCTTCAACTTATGGACCTCGGCTATCATCTTGTTGGTGTTGG
CAATGATTGTTGTGGATCTCATGGTATTTTCTTTATTCCTAATTTCCTAATTATCTCTGGAACGCTATATTATAAGTTAGGCGTGATGGCAATTTTGAATATCCAATTGA
ACGCAATCTCTGTCGTCAATCTTGTCATGTCTGTGGGAATTGCTGTTGAATTTTGTGTGCATTTGACACATGCTTTCTCGGTAAGCAGTGGAGATAGAAACCAACGGATG
AAGGAGGCTCTTAGTACAATGGGAGCATCTGTTCTTAGTGGAATCACACTAACAAAGCTAGTCGGGGTCCTTGTACTTTGCTTCTCTAGGACCGAAGTTTTTGTGGTTTA
TTATTTCCAAATGTACTTGGCATTAGTACTGCTTGGATTTTTGCACGGCCTCGTATTCTTGCCAGTAATGTTGAGCTTGTTCGGTCCACCTTCAAGATGTGTATTCGTCG
AGCAACAGGACAATCGGCCCTCTACTTCATCTCGATTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGGTGCGGTTTTTATTGTTAGTGATGGTGTTTCTGGCATTGAAGTAGACGGATATTCTTCTCTTCTTCAACTTATGGACCTCGGCTATCATCTTGTTGGTGTTGG
CAATGATTGTTGTGGATCTCATGGTATTTTCTTTATTCCTAATTTCCTAATTATCTCTGGAACGCTATATTATAAGTTAGGCGTGATGGCAATTTTGAATATCCAATTGA
ACGCAATCTCTGTCGTCAATCTTGTCATGTCTGTGGGAATTGCTGTTGAATTTTGTGTGCATTTGACACATGCTTTCTCGGTAAGCAGTGGAGATAGAAACCAACGGATG
AAGGAGGCTCTTAGTACAATGGGAGCATCTGTTCTTAGTGGAATCACACTAACAAAGCTAGTCGGGGTCCTTGTACTTTGCTTCTCTAGGACCGAAGTTTTTGTGGTTTA
TTATTTCCAAATGTACTTGGCATTAGTACTGCTTGGATTTTTGCACGGCCTCGTATTCTTGCCAGTAATGTTGAGCTTGTTCGGTCCACCTTCAAGATGTGTATTCGTCG
AGCAACAGGACAATCGGCCCTCTACTTCATCTCGATTGTAAGAGTTACAATTTAATTTGCAGAGATGAACAGGGTTCCATAGGCTTTTGAAGGTTTGGCGCATTCATTGG
CATATACATGCTTAAACCCCAATAAAGAAAGGAAGAGAAAAAGATATAGTAGCTTCTAAGTTGTAAAGTGAAATTGTGATACCAGGTAGCGTTAGTTATTTTCTTTTGTA
ATTTGTATAAGGCGTTGCTTCCGTTCCCTGCAATCAGAAAATGACATTTAAGTTGATGGTATCAGACAATTCTGATATCGTTCATCATCATGTTAGTGAATAGTGTTGTT
GTAATTTTGGCAAATCCTGAGTAGATGTGCAGGTTTGTTTGTCGAGTTTAAGACTTTTTTTTTTTCTTTTTTGTGATCTGATTTTCATTCATCCGTGGCTGTAGTGATTA
CAAAATTCTCCCAAGTAGAAGTTTGCCTCCTGAAGATCGATTCATGAATTAATTTGCAATGATAATGCATTTTAG
Protein sequenceShow/hide protein sequence
MKGAVFIVSDGVSGIEVDGYSSLLQLMDLGYHLVGVGNDCCGSHGIFFIPNFLIISGTLYYKLGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDRNQRM
KEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVMLSLFGPPSRCVFVEQQDNRPSTSSRL