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Lsi04G018270 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G018270
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGlyceraldehyde-3-phosphate dehydrogenase Bic isoform X1
Genome locationchr04:25431354..25432053
RNA-Seq ExpressionLsi04G018270
SyntenyLsi04G018270
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN81495.1 hypothetical protein VITISV_031969 [Vitis vinifera]5.5e-0856.76Show/hide
Query:  ATILSMSSPITIVNEESIVEETSVYLKSTETRGISHTAKTPFNGPSATFLKATLTSSGEMPFFSTFTTRSTTET
        +T L+MSSPIT+V +ES VE+TS +LKST+T G SH    P +  SA FLKA  TSS ++    T TTRSTTET
Subjt:  ATILSMSSPITIVNEESIVEETSVYLKSTETRGISHTAKTPFNGPSATFLKATLTSSGEMPFFSTFTTRSTTET

KAF1886043.1 hypothetical protein Lal_00021324 [Lupinus albus]6.8e-0660.71Show/hide
Query:  LSMSSPITIVNEESIVEETSVYLKSTETRGISHTAKTPFNGPSATFLKATLTSSGE
        L++SSP+TIVN+ESIVEETSV+LKST+T G S T + PF+  SA  L A  TSS +
Subjt:  LSMSSPITIVNEESIVEETSVYLKSTETRGISHTAKTPFNGPSATFLKATLTSSGE

KAF7016805.1 hypothetical protein CFC21_030333 [Triticum aestivum]8.3e-0446.48Show/hide
Query:  LSMSSPITIVNEESIVEETSVYLKSTETRGISHTAKTPFNGPSATFLKATLTSSGEMPFFSTFTTRSTTET
        L+MSSP+T++++ S+VE+TS + KST+T G S T++ P +  +A    A  TSS  + F  T TTRSTT+T
Subjt:  LSMSSPITIVNEESIVEETSVYLKSTETRGISHTAKTPFNGPSATFLKATLTSSGEMPFFSTFTTRSTTET

VVW58739.1 unnamed protein product, partial [Nymphaea colorata]1.2e-0755.41Show/hide
Query:  ATILSMSSPITIVNEESIVEETSVYLKSTETRGISHTAKTPFNGPSATFLKATLTSSGEMPFFSTFTTRSTTET
        A   +MSSPIT+V++ S V++TS +LKST+TRG SHT + P +  SA  LKA  TSS  + FF T TTRSTT+T
Subjt:  ATILSMSSPITIVNEESIVEETSVYLKSTETRGISHTAKTPFNGPSATFLKATLTSSGEMPFFSTFTTRSTTET

TrEMBL top hitse value%identityAlignment
A0A2P2JS94 Glyceraldehyde-3-phosphate dehydrogenase Bic isoform X19.8e-1974.32Show/hide
Query:  ATILSMSSPITIVNEESIVEETSVYLKSTETRGISHTAKTPFNGPSATFLKATLTSSGEMPFFSTFTTRSTTET
        AT L++SSP+T+VNEESIVEETS+  KST+TRG S T+  PFNGPSA FL A LTSS EMPFFSTFTTRSTT+T
Subjt:  ATILSMSSPITIVNEESIVEETSVYLKSTETRGISHTAKTPFNGPSATFLKATLTSSGEMPFFSTFTTRSTTET

A0A5K1F6C0 Uncharacterized protein (Fragment)6.0e-0855.41Show/hide
Query:  ATILSMSSPITIVNEESIVEETSVYLKSTETRGISHTAKTPFNGPSATFLKATLTSSGEMPFFSTFTTRSTTET
        A   +MSSPIT+V++ S V++TS +LKST+TRG SHT + P +  SA  LKA  TSS  + FF T TTRSTT+T
Subjt:  ATILSMSSPITIVNEESIVEETSVYLKSTETRGISHTAKTPFNGPSATFLKATLTSSGEMPFFSTFTTRSTTET

A0A6A5NRD2 Uncharacterized protein3.3e-0660.71Show/hide
Query:  LSMSSPITIVNEESIVEETSVYLKSTETRGISHTAKTPFNGPSATFLKATLTSSGE
        L++SSP+TIVN+ESIVEETSV+LKST+T G S T + PF+  SA  L A  TSS +
Subjt:  LSMSSPITIVNEESIVEETSVYLKSTETRGISHTAKTPFNGPSATFLKATLTSSGE

A0A6N2M8K3 Uncharacterized protein2.7e-0859.42Show/hide
Query:  MSSPITIVNEESIVEETSVYLKSTETRGISHTAKTPFNGPSATFLKATLTSSGEMPFFSTFTTRSTTET
        MSSPITIV++ES V++TS++LKSTET G S T + P +  SA  LKA  TSS ++ F  T+TTRSTTET
Subjt:  MSSPITIVNEESIVEETSVYLKSTETRGISHTAKTPFNGPSATFLKATLTSSGEMPFFSTFTTRSTTET

A5BUM4 RING-type domain-containing protein2.7e-0856.76Show/hide
Query:  ATILSMSSPITIVNEESIVEETSVYLKSTETRGISHTAKTPFNGPSATFLKATLTSSGEMPFFSTFTTRSTTET
        +T L+MSSPIT+V +ES VE+TS +LKST+T G SH    P +  SA FLKA  TSS ++    T TTRSTTET
Subjt:  ATILSMSSPITIVNEESIVEETSVYLKSTETRGISHTAKTPFNGPSATFLKATLTSSGEMPFFSTFTTRSTTET

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGCAACGATCTTGAGCATGTCATCTCCCATTACTATTGTTAATGAGGAGTCAATCGTGGAGGAAACATCAGTATACTTGAAGTCTACAGAAACAAGAGGGATATC
GCACACAGCTAAAACGCCCTTCAATGGTCCATCAGCTACCTTTCTAAAGGCAACATTGACGTCGTCGGGGGAGATGCCTTTCTTCTCAACGTTCACAACGAGATCGACAA
CTGAAACGCACATGAAGTGCAATACTATTGAGCTTGCCCTTAAGTTGGGGAAGCACAAGGGACACAGTCTTTGCTGCACCCATGCTCATAGGGACAATGTTCAAAGTTGC
AGCCCTCGCTCGCCTCAAGTCACG
mRNA sequenceShow/hide mRNA sequence
ATGATGGCAACGATCTTGAGCATGTCATCTCCCATTACTATTGTTAATGAGGAGTCAATCGTGGAGGAAACATCAGTATACTTGAAGTCTACAGAAACAAGAGGGATATC
GCACACAGCTAAAACGCCCTTCAATGGTCCATCAGCTACCTTTCTAAAGGCAACATTGACGTCGTCGGGGGAGATGCCTTTCTTCTCAACGTTCACAACGAGATCGACAA
CTGAAACGCACATGAAGTGCAATACTATTGAGCTTGCCCTTAAGTTGGGGAAGCACAAGGGACACAGTCTTTGCTGCACCCATGCTCATAGGGACAATGTTCAAAGTTGC
AGCCCTCGCTCGCCTCAAGTCACG
Protein sequenceShow/hide protein sequence
MMATILSMSSPITIVNEESIVEETSVYLKSTETRGISHTAKTPFNGPSATFLKATLTSSGEMPFFSTFTTRSTTETHMKCNTIELALKLGKHKGHSLCCTHAHRDNVQSC
SPRSPQVT