CuGenDBv2

Gene ID	Lsi04G018280
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Glyceraldehyde-3-phosphate dehydrogenase
Genome location	chr04:25431480..25432784
RNA-Seq Expression	Lsi04G018280
Synteny	Lsi04G018280
Gene Ontology terms	GO:0006006 - glucose metabolic process (biological process) GO:0009536 - plastid (cellular component) GO:0004365 - glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity (molecular function) GO:0050661 - NADP binding (molecular function) GO:0051287 - NAD binding (molecular function)
InterPro domains	IPR020829 - Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AAG23800.1 chloroplast NADP-dependent glyceraldehyde 3-phosphate dehydrogenase B subunit, partial [Cucurbita pepo]

1.6e-50

88.8

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Query:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD
        RLLDAS+RDLRRARAA LNIVP S GAAK VSLVLPQLKGKLN IAL VPTPNVSVVDLVVN+EKKGIS DDVN AFRK ADGPLKGVLAVCDIPLVSVD
Subjt:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD

Query:  FKYTDVSSTIDSSLTIVMGDDMLKI
        FK TDVSSTIDSSLT+VMGDDMLK+
Subjt:  FKYTDVSSTIDSSLTIVMGDDMLKI

CZF77070.1 Glyceraldehyde phosphate dehydrogenase B [Cucumis sativus]

1.6e-50

88.8

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Query:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD
        RLLDAS+RDLRRARAA LNIVP S GAAK VSLVLPQLKGKLN IAL VPTPNVSVVDLVVN+EKKGIS DDVN AFRK ADGPLKGVLAVCDIPLVSVD
Subjt:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD

Query:  FKYTDVSSTIDSSLTIVMGDDMLKI
        FK TDVSSTIDSSLT+VMGDDMLK+
Subjt:  FKYTDVSSTIDSSLTIVMGDDMLKI

QFX66114.1 chloroplastic glyceraldehyde-3-phosphate dehydrogenase B [Luffa aegyptiaca]

1.6e-50

88.8

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Query:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD
        RLLDAS+RDLRRARAA LNIVP S GAAK VSLVLPQLKGKLN IAL VPTPNVSVVDLVVN+EKKGIS DDVN AFRK ADGPLKGVLAVCDIPLVSVD
Subjt:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD

Query:  FKYTDVSSTIDSSLTIVMGDDMLKI
        FK TDVSSTIDSSLT+VMGDDMLK+
Subjt:  FKYTDVSSTIDSSLTIVMGDDMLKI

XP_008452998.1 PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic [Cucumis melo]

1.6e-50

88.8

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Query:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD
        RLLDAS+RDLRRARAA LNIVP S GAAK VSLVLPQLKGKLN IAL VPTPNVSVVDLVVN+EKKGIS DDVN AFRK ADGPLKGVLAVCDIPLVSVD
Subjt:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD

Query:  FKYTDVSSTIDSSLTIVMGDDMLKI
        FK TDVSSTIDSSLT+VMGDDMLK+
Subjt:  FKYTDVSSTIDSSLTIVMGDDMLKI

XP_022936062.1 glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic isoform X2 [Cucurbita moschata]

1.6e-50

88.8

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Query:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD
        RLLDAS+RDLRRARAA LNIVP S GAAK VSLVLPQLKGKLN IAL VPTPNVSVVDLVVN+EKKGIS DDVN AFRK ADGPLKGVLAVCDIPLVSVD
Subjt:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD

Query:  FKYTDVSSTIDSSLTIVMGDDMLKI
        FK TDVSSTIDSSLT+VMGDDMLK+
Subjt:  FKYTDVSSTIDSSLTIVMGDDMLKI

TrEMBL top hits

e value

%identity

Alignment

A0A1B5FYN9 Glyceraldehyde-3-phosphate dehydrogenase

7.7e-51

88.8

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Query:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD
        RLLDAS+RDLRRARAA LNIVP S GAAK VSLVLPQLKGKLN IAL VPTPNVSVVDLVVN+EKKGIS DDVN AFRK ADGPLKGVLAVCDIPLVSVD
Subjt:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD

Query:  FKYTDVSSTIDSSLTIVMGDDMLKI
        FK TDVSSTIDSSLT+VMGDDMLK+
Subjt:  FKYTDVSSTIDSSLTIVMGDDMLKI

A0A1M4NEC6 Glyceraldehyde-3-phosphate dehydrogenase

7.7e-51

88.8

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Query:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD
        RLLDAS+RDLRRARAA LNIVP S GAAK VSLVLPQLKGKLN IAL VPTPNVSVVDLVVN+EKKGIS DDVN AFRK ADGPLKGVLAVCDIPLVSVD
Subjt:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD

Query:  FKYTDVSSTIDSSLTIVMGDDMLKI
        FK TDVSSTIDSSLT+VMGDDMLK+
Subjt:  FKYTDVSSTIDSSLTIVMGDDMLKI

A0A5D3D8Q8 Glyceraldehyde-3-phosphate dehydrogenase

7.7e-51

88.8

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Query:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD
        RLLDAS+RDLRRARAA LNIVP S GAAK VSLVLPQLKGKLN IAL VPTPNVSVVDLVVN+EKKGIS DDVN AFRK ADGPLKGVLAVCDIPLVSVD
Subjt:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD

Query:  FKYTDVSSTIDSSLTIVMGDDMLKI
        FK TDVSSTIDSSLT+VMGDDMLK+
Subjt:  FKYTDVSSTIDSSLTIVMGDDMLKI

A0A6J1ICN9 Glyceraldehyde-3-phosphate dehydrogenase

7.7e-51

88.8

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Query:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD
        RLLDAS+RDLRRARAA LNIVP S GAAK VSLVLPQLKGKLN IAL VPTPNVSVVDLVVN+EKKGIS DDVN AFRK ADGPLKGVLAVCDIPLVSVD
Subjt:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD

Query:  FKYTDVSSTIDSSLTIVMGDDMLKI
        FK TDVSSTIDSSLT+VMGDDMLK+
Subjt:  FKYTDVSSTIDSSLTIVMGDDMLKI

A0A6J1IDR4 Glyceraldehyde-3-phosphate dehydrogenase

7.7e-51

88.8

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Query:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD
        RLLDAS+RDLRRARAA LNIVP S GAAK VSLVLPQLKGKLN IAL VPTPNVSVVDLVVN+EKKGIS DDVN AFRK ADGPLKGVLAVCDIPLVSVD
Subjt:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD

Query:  FKYTDVSSTIDSSLTIVMGDDMLKI
        FK TDVSSTIDSSLT+VMGDDMLK+
Subjt:  FKYTDVSSTIDSSLTIVMGDDMLKI

SwissProt top hits

e value

%identity

Alignment

P09044 Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment)

4.8e-50

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Query:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD
        RLLDAS+RDLRRARAA LNIVP S GAAK VSLVLPQLKGKLN IAL VPTPNVSVVDLVVNV KKGI+ +DVN AFRK ADGPLKGVLAVCD PLVSVD
Subjt:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD

Query:  FKYTDVSSTIDSSLTIVMGDDMLKI
        F+ +DVSSTIDSSLT+VMGDDM+K+
Subjt:  FKYTDVSSTIDSSLTIVMGDDMLKI

P12859 Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic

1.8e-49

81.6

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Query:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD
        RLLDAS+RDLRRARAA LNIVP S GAAK VSLVLPQLKGKLN IAL VPTPNVSVVDLVVNV KKGIS +DVN AFRK A+GPLKG+L VCD+PLVSVD
Subjt:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD

Query:  FKYTDVSSTIDSSLTIVMGDDMLKI
        F+ +DVS+TIDSSLT+VMGDDM+K+
Subjt:  FKYTDVSSTIDSSLTIVMGDDMLKI

P12860 Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic

3.8e-47

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Query:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD
        RLLDAS+RDLRRARAA LNIVP S GAAK VSLVLPQLKGKLN IAL VPTPNVSVVDLVVN+EK G++ +DVN AFRK A GPLKGVL VCDIPLVSVD
Subjt:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD

Query:  FKYTDVSSTIDSSLTIVMGDDMLKI
        F+ +D SSTIDSSLT+VMG DM+K+
Subjt:  FKYTDVSSTIDSSLTIVMGDDMLKI

P19866 Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic

5.7e-43

75.2

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Query:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD
        RLLDAS+RDLRRARAA LNIVP S GAAK V+LVLP LKGKLN IAL VPTPNVSVVDLVV V KK  + ++VN AFR+ AD  LKG+L+VCD PLVS+D
Subjt:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD

Query:  FKYTDVSSTIDSSLTIVMGDDMLKI
        F+ TDVSSTIDSSLT+VMGDDM+K+
Subjt:  FKYTDVSSTIDSSLTIVMGDDMLKI

P25857 Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic

2.0e-48

79.2

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Query:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD
        RLLDAS+RDLRRARAA LNIVP S GAAK VSLVLPQLKGKLN IAL VPTPNVSVVDLV+NVEKKG++ +DVN AFRK A+GP+KG+L VCD PLVSVD
Subjt:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD

Query:  FKYTDVSSTIDSSLTIVMGDDMLKI
        F+ +DVS+TIDSSLT+VMGDDM+K+
Subjt:  FKYTDVSSTIDSSLTIVMGDDMLKI

Arabidopsis top hits

e value

%identity

Alignment

AT1G12900.1 glyceraldehyde 3-phosphate dehydrogenase A subunit 2

7.6e-43

74.4

Show/hide

Query:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD
        RLLDAS+RDLRRARAA LNIVP S GAAK V+LVLP LKGKLN IAL VPTPNVSVVDLVV V KK  + ++VN AFR  A+  LKG+L VCD PLVSVD
Subjt:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD

Query:  FKYTDVSSTIDSSLTIVMGDDMLKI
        F+ +DVSSTIDSSLT+VMGDDM+K+
Subjt:  FKYTDVSSTIDSSLTIVMGDDMLKI

AT1G12900.2 glyceraldehyde 3-phosphate dehydrogenase A subunit 2

7.6e-43

74.4

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Query:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD
        RLLDAS+RDLRRARAA LNIVP S GAAK V+LVLP LKGKLN IAL VPTPNVSVVDLVV V KK  + ++VN AFR  A+  LKG+L VCD PLVSVD
Subjt:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD

Query:  FKYTDVSSTIDSSLTIVMGDDMLKI
        F+ +DVSSTIDSSLT+VMGDDM+K+
Subjt:  FKYTDVSSTIDSSLTIVMGDDMLKI

AT1G12900.3 glyceraldehyde 3-phosphate dehydrogenase A subunit 2

7.6e-43

74.4

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Query:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD
        RLLDAS+RDLRRARAA LNIVP S GAAK V+LVLP LKGKLN IAL VPTPNVSVVDLVV V KK  + ++VN AFR  A+  LKG+L VCD PLVSVD
Subjt:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD

Query:  FKYTDVSSTIDSSLTIVMGDDMLKI
        F+ +DVSSTIDSSLT+VMGDDM+K+
Subjt:  FKYTDVSSTIDSSLTIVMGDDMLKI

AT1G12900.4 glyceraldehyde 3-phosphate dehydrogenase A subunit 2

7.6e-43

74.4

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Query:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD
        RLLDAS+RDLRRARAA LNIVP S GAAK V+LVLP LKGKLN IAL VPTPNVSVVDLVV V KK  + ++VN AFR  A+  LKG+L VCD PLVSVD
Subjt:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD

Query:  FKYTDVSSTIDSSLTIVMGDDMLKI
        F+ +DVSSTIDSSLT+VMGDDM+K+
Subjt:  FKYTDVSSTIDSSLTIVMGDDMLKI

AT1G42970.1 glyceraldehyde-3-phosphate dehydrogenase B subunit

1.4e-49

79.2

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Query:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD
        RLLDAS+RDLRRARAA LNIVP S GAAK VSLVLPQLKGKLN IAL VPTPNVSVVDLV+NVEKKG++ +DVN AFRK A+GP+KG+L VCD PLVSVD
Subjt:  RLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVD

Query:  FKYTDVSSTIDSSLTIVMGDDMLKI
        F+ +DVS+TIDSSLT+VMGDDM+K+
Subjt:  FKYTDVSSTIDSSLTIVMGDDMLKI

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGAGACTTTTGGATGCATCATACCGTGACTTGAGGCGAGCGAGGGCTGCAACTTTGAACATTGTCCCTATGAGCATGGGTGCAGCAAAGACTGTGTCCCTTGTGCT
TCCCCAACTTAAGGGCAAGCTCAATAGTATTGCACTTCATGTGCCTACTCCAAACGTTTCAGTTGTCGATCTCGTTGTGAACGTTGAGAAGAAAGGCATCTCCCCCGACG
ACGTCAATGTTGCCTTTAGAAAGGTAGCTGATGGACCATTGAAGGGCGTTTTAGCTGTGTGCGATATCCCTCTTGTTTCTGTAGACTTCAAGTATACTGATGTTTCCTCC
ACGATTGACTCCTCATTAACAATAGTAATGGGAGATGACATGCTCAAGATCCCAAAGAGTTGTCGACTTGACTCATTTGGTGGCAAACAAATAACTAGGGGCAAGATCGG
GAAAAAGCAGAGATTCATTGGAAGACTTCTGTCAGACTAA

mRNA sequence

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Protein sequence

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MARLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVDFKYTDVSS
TIDSSLTIVMGDDMLKIPKSCRLDSFGGKQITRGKIGKKQRFIGRLLSD

Lsi04G018280 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome