CuGenDBv2

Gene ID	Lsi04G018480
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	protein MODIFYING WALL LIGNIN-2-like
Genome location	chr04:25608819..25609953
RNA-Seq Expression	Lsi04G018480
Synteny	Lsi04G018480
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6608021.1 Protein MODIFYING WALL LIGNIN-1, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-42

87.62

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Query:  MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTL
        MEKP SS FVI FSIVA L LASFASC+AAEFNRT KKDLKLNGR CFLPESEAFKLGV GL+CLIMAQIIGNTIICHSY PKE+RKSCSVKRPLLSTTL
Subjt:  MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTL

Query:  LISWS
        LISW+
Subjt:  LISWS

XP_022937014.1 uncharacterized protein LOC111443438 [Cucurbita moschata]

8.1e-43

90.38

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Query:  MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTL
        MEKP  SSFVISFSIVAVL LASFASC+AAEFNRTKKKDLKLNGR CFLPESEAFKLGV G+VCLIMA IIGNTIICH+Y PKEHRKSCSVKRPLLSTTL
Subjt:  MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTL

Query:  LISW
        LISW
Subjt:  LISW

XP_022940987.1 uncharacterized protein LOC111446405 [Cucurbita moschata]

1.4e-42

87.62

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Query:  MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTL
        MEKP SS FVI FSIVA L LASFASC+AAEFNRT KKDLKLNGR CFLPESEAFKLGV GL+CLIMAQIIGNTIICHSY PKE+RKSCSVKRPLLSTTL
Subjt:  MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTL

Query:  LISWS
        LISW+
Subjt:  LISWS

XP_023535227.1 uncharacterized protein LOC111796718 [Cucurbita pepo subsp. pepo]

8.1e-43

90.38

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Query:  MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTL
        MEKP  SSFVISFSIVAVL LASFASC+AAEFNRTKKKDLKLNGR CFLPESEAFKLGV G+VCLIMA IIGNTIICH+Y PKEHRKSCSVKRPLLSTTL
Subjt:  MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTL

Query:  LISW
        LISW
Subjt:  LISW

XP_038896171.1 protein MODIFYING WALL LIGNIN-1 [Benincasa hispida]

8.1e-43

88.46

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Query:  MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTL
        MEKP S  FVISFSIVAVL +ASFASC+AAEFNRTKK+DLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGN IICHSY PKEHRKSCSVKRP+LS  L
Subjt:  MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTL

Query:  LISW
        LISW
Subjt:  LISW

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L099 Uncharacterized protein

3.3e-42

82.24

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Query:  QAVMEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLS
        Q  ME P SSSFVISFS+VA+L LASFASC+AAEFNRTKK+DLKLN +LCFLPESEAFKLG+GGL+CLIMAQIIG T+ICHSY PKEHRKSCSVK+PLLS
Subjt:  QAVMEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLS

Query:  TTLLISW
          LLISW
Subjt:  TTLLISW

A0A1S3B9G0 uncharacterized protein LOC103487629

4.3e-42

85.58

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Query:  MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTL
        MEKP SSSFVISFSIVA+L LASFASC+AAEFNRTKK+DLKLNG+ CFLPESEAFKLG+GGLVCLIMAQIIG+T+I HSY PKEHRKSCSVK+PLLS  L
Subjt:  MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTL

Query:  LISW
        LISW
Subjt:  LISW

A0A6J1F9Y8 uncharacterized protein LOC111443438

3.9e-43

90.38

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Query:  MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTL
        MEKP  SSFVISFSIVAVL LASFASC+AAEFNRTKKKDLKLNGR CFLPESEAFKLGV G+VCLIMA IIGNTIICH+Y PKEHRKSCSVKRPLLSTTL
Subjt:  MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTL

Query:  LISW
        LISW
Subjt:  LISW

A0A6J1FQT7 uncharacterized protein LOC111446405

6.7e-43

87.62

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Query:  MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTL
        MEKP SS FVI FSIVA L LASFASC+AAEFNRT KKDLKLNGR CFLPESEAFKLGV GL+CLIMAQIIGNTIICHSY PKE+RKSCSVKRPLLSTTL
Subjt:  MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTL

Query:  LISWS
        LISW+
Subjt:  LISWS

A0A6J1II23 uncharacterized protein LOC111477105

1.1e-40

88.46

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Query:  MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTL
        ME P  SSFVISFSIVAVL LASFASC+AAEFNRTKKKDLKLNGR CFLPESEAFKLGV G+VCLIMA IIGNTIICH+Y PKEHRKSCSVKRPLL TTL
Subjt:  MEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTTL

Query:  LISW
        LISW
Subjt:  LISW

SwissProt top hits

e value

%identity

Alignment

A2RVU1 Protein MODIFYING WALL LIGNIN-1

3.2e-10

41.33

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Query:  VAVLNLASFASCIAAEFNRTKK----------KDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSY
        + +  LA+F  C++AEF + K           KDLK +G  C+LPE+ AF LG+  LVC+ +AQI+GN +IC  +
Subjt:  VAVLNLASFASCIAAEFNRTKK----------KDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSY

O65708 Protein MODIFYING WALL LIGNIN-2

1.9e-10

38.54

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Query:  FSIVAVLNLASFASCIAAEFNRTKKKDLKLN-GRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTT--LLISWS
        +S+V  L L SF +C AAEF RT+K+D++ +  R C++P S AF LG   ++C  +AQI+GN ++  ++  +  R+       L   T  LL+SWS
Subjt:  FSIVAVLNLASFASCIAAEFNRTKKKDLKLN-GRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTT--LLISWS

Arabidopsis top hits

e value

%identity

Alignment

AT1G31720.1 Protein of unknown function (DUF1218)

7.9e-12

41.03

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Query:  FSIVAVLNLASFASCIAAEFNRTKK----------KDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSY
        F  + +  LA+F  C++AEF + K           KDLK +G  C+LPE+ AF LG+  LVC+ +AQI+GN +IC  +
Subjt:  FSIVAVLNLASFASCIAAEFNRTKK----------KDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSY

AT4G19370.1 Protein of unknown function (DUF1218)

1.3e-11

38.54

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Query:  FSIVAVLNLASFASCIAAEFNRTKKKDLKLN-GRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTT--LLISWS
        +S+V  L L SF +C AAEF RT+K+D++ +  R C++P S AF LG   ++C  +AQI+GN ++  ++  +  R+       L   T  LL+SWS
Subjt:  FSIVAVLNLASFASCIAAEFNRTKKKDLKLN-GRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPKEHRKSCSVKRPLLSTT--LLISWS

Sequences

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CDS sequence

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ATGAAAACCCATTTATTTAAAGTCATCAGTCAGCTGGGTCCCAACAAAGCCTGGCTCCCTTCTACAACGGCTCAGGCCGTCATGGAAAAGCCCCTTTCTTCTAGCTTCGT
GATAAGCTTTTCCATTGTCGCAGTCCTTAATCTCGCCTCCTTCGCATCCTGTATAGCTGCTGAATTCAACAGAACAAAAAAAAAGGACTTGAAATTGAACGGCAGATTGT
GCTTCCTGCCTGAAAGTGAAGCATTCAAATTGGGAGTCGGAGGTTTGGTGTGTTTAATAATGGCTCAGATCATCGGAAACACCATAATCTGCCATAGCTATTGCCCAAAA
GAGCATAGAAAAAGTTGCAGTGTCAAAAGACCTCTGCTTTCAACTACCCTTCTCATCTCTTGGTCGGTAATTCTTTCTTCATACTAA

mRNA sequence

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AAAGAAGTGGGAAAGGAGGGGAGGAGGGTGCGGCATCTTTGAGGAACTTTCTAAGAAGAAACATTTGAAGTTGAAGCCTCCTAATTTATTTGAGCATCTGATGTCAAAAG
GCTTTCAATTATTCCATTATCCCATCCATGAAAACCCATTTATTTAAAGTCATCAGTCAGCTGGGTCCCAACAAAGCCTGGCTCCCTTCTACAACGGCTCAGGCCGTCAT
GGAAAAGCCCCTTTCTTCTAGCTTCGTGATAAGCTTTTCCATTGTCGCAGTCCTTAATCTCGCCTCCTTCGCATCCTGTATAGCTGCTGAATTCAACAGAACAAAAAAAA
AGGACTTGAAATTGAACGGCAGATTGTGCTTCCTGCCTGAAAGTGAAGCATTCAAATTGGGAGTCGGAGGTTTGGTGTGTTTAATAATGGCTCAGATCATCGGAAACACC
ATAATCTGCCATAGCTATTGCCCAAAAGAGCATAGAAAAAGTTGCAGTGTCAAAAGACCTCTGCTTTCAACTACCCTTCTCATCTCTTGGTCGGTAATTCTTTCTTCATA
CTAA

Protein sequence

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MKTHLFKVISQLGPNKAWLPSTTAQAVMEKPLSSSFVISFSIVAVLNLASFASCIAAEFNRTKKKDLKLNGRLCFLPESEAFKLGVGGLVCLIMAQIIGNTIICHSYCPK
EHRKSCSVKRPLLSTTLLISWSVILSSY

Lsi04G018480 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome