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Lsi04G018540 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G018540
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionNDR1/HIN1-like protein 12
Genome locationchr04:25662356..25662961
RNA-Seq ExpressionLsi04G018540
SyntenyLsi04G018540
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0006898 - receptor-mediated endocytosis (biological process)
GO:0005794 - Golgi apparatus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030124 - AP-4 adaptor complex (cellular component)
GO:0140312 - cargo adaptor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052257.1 NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa]2.3e-10292.04Show/hide
Query:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLF
        MPPNFLSSLKRHTHPLIWIAGIICA IALAVI+AGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLE+QMKIVVRAENQNA+AHASFS TDFVLLF
Subjt:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLF

Query:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQ
        +GIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPL+ TQMQHLSWSLKR+L+QFDL+GSSRTRWRVG+LGPLKFWCRLNCHLRF P NGSY+P PCSSNQ
Subjt:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQ

Query:  K
        K
Subjt:  K

KGN53998.2 hypothetical protein Csa_011831 [Cucumis sativus]3.3e-10191.04Show/hide
Query:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLF
        MPPNFLSSLKRHTHPLIWIAGIICA IALAVIIAGIVIFIGYVTIRPRVPSISVTDGHL+RIRSSRTGLLE+QMKIVVRAENQNA+AHA FS TDFVLLF
Subjt:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLF

Query:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQ
        +GIEIASLVAHRPFKVNKM+YLDLHFLVESSAIPL+ TQMQHLSWSLKRDL+QFDL+GSSRTRWRVGVLGPLKFWCRL+CHLRF+P NGSY+P PCSS Q
Subjt:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQ

Query:  K
        K
Subjt:  K

XP_022135525.1 uncharacterized protein LOC111007456 [Momordica charantia]9.5e-10191.54Show/hide
Query:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLF
        MPP FLSSLKRHTHPLIWIAGIICA IALAVII GIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLE+QMKIVVRAENQNA+AHASFS TDFVL+F
Subjt:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLF

Query:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQ
        +GIEIASLVA RPFKV+KMSYLDLHFLVESSAIPLNPTQM HLSWSLKR+LMQFDL+GSSRTRWRVGVLGPLKFWCRLNCHLRF+P NGSYVPAPCSS  
Subjt:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQ

Query:  K
        K
Subjt:  K

XP_022940744.1 uncharacterized protein LOC111446247 [Cucurbita moschata]1.3e-10594.53Show/hide
Query:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLF
        MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVP+ISVTDGHLDRIRSSRTGLLE+QMKIVVRAENQNARAHASFSHTDFVL+F
Subjt:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLF

Query:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQ
        +GIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHL WSLKR+LMQFDL+GSSRTRWRVGVLGPLKFWCRLNCHLRFYP NGSY+PAPCSS  
Subjt:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQ

Query:  K
        K
Subjt:  K

XP_038896622.1 uncharacterized protein LOC120084885 [Benincasa hispida]4.4e-10695.02Show/hide
Query:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLF
        MPPNFLSS+KRHTHPLIWIAGIICA IALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLE+QMKIVVRAENQNARAHASFS TDFVLLF
Subjt:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLF

Query:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQ
        +GIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDL+GSSRTRWRVG+LGPLKFWCRLNCHLRFYP NGSY+PAPCSS Q
Subjt:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQ

Query:  K
        K
Subjt:  K

TrEMBL top hitse value%identityAlignment
A0A0A0L1I9 Uncharacterized protein1.6e-10191.04Show/hide
Query:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLF
        MPPNFLSSLKRHTHPLIWIAGIICA IALAVIIAGIVIFIGYVTIRPRVPSISVTDGHL+RIRSSRTGLLE+QMKIVVRAENQNA+AHA FS TDFVLLF
Subjt:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLF

Query:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQ
        +GIEIASLVAHRPFKVNKM+YLDLHFLVESSAIPL+ TQMQHLSWSLKRDL+QFDL+GSSRTRWRVGVLGPLKFWCRL+CHLRF+P NGSY+P PCSS Q
Subjt:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQ

Query:  K
        K
Subjt:  K

A0A5D3BSN8 NDR1/HIN1-like protein 121.1e-10292.04Show/hide
Query:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLF
        MPPNFLSSLKRHTHPLIWIAGIICA IALAVI+AGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLE+QMKIVVRAENQNA+AHASFS TDFVLLF
Subjt:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLF

Query:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQ
        +GIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPL+ TQMQHLSWSLKR+L+QFDL+GSSRTRWRVG+LGPLKFWCRLNCHLRF P NGSY+P PCSSNQ
Subjt:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQ

Query:  K
        K
Subjt:  K

A0A6J1C199 uncharacterized protein LOC1110074564.6e-10191.54Show/hide
Query:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLF
        MPP FLSSLKRHTHPLIWIAGIICA IALAVII GIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLE+QMKIVVRAENQNA+AHASFS TDFVL+F
Subjt:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLF

Query:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQ
        +GIEIASLVA RPFKV+KMSYLDLHFLVESSAIPLNPTQM HLSWSLKR+LMQFDL+GSSRTRWRVGVLGPLKFWCRLNCHLRF+P NGSYVPAPCSS  
Subjt:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQ

Query:  K
        K
Subjt:  K

A0A6J1FEV3 uncharacterized protein LOC1114434371.7e-10090.55Show/hide
Query:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLF
        MPPNFLSSLKRHTHPLIWIAGIICA IA+AVIIAGIVIFIGYVTIRP VPSISVTDGHLDRIR+SR GLLE+QMKIVVRAENQNARA ASFSHTDFVL+F
Subjt:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLF

Query:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQ
        +GIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNP QMQHLSWSL R+LMQFDL+GSSRTRWRVGVLGPLKFWC LNC LRFYP NGSY+PAPCSS  
Subjt:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQ

Query:  K
        K
Subjt:  K

A0A6J1FL61 uncharacterized protein LOC1114462476.2e-10694.53Show/hide
Query:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLF
        MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVP+ISVTDGHLDRIRSSRTGLLE+QMKIVVRAENQNARAHASFSHTDFVL+F
Subjt:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLF

Query:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQ
        +GIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHL WSLKR+LMQFDL+GSSRTRWRVGVLGPLKFWCRLNCHLRFYP NGSY+PAPCSS  
Subjt:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQ

Query:  K
        K
Subjt:  K

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G13050.1 unknown protein2.8e-1026.01Show/hide
Query:  RHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLFEGIEIASLVA
        + T P+   A I CA + + +I++G+++ + Y+  RPR P   ++   L+        +L   + +VV   N + ++   FS+  F L F    IA+   
Subjt:  RHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLFEGIEIASLVA

Query:  H-RPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHL
        H  PF V K   +   F + SS + +   Q Q L   L    +  +LRG+   R  +G L    +W    C +
Subjt:  H-RPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHL

AT1G13050.2 unknown protein3.1e-0926.22Show/hide
Query:  AGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLFEGIEIASLVAH-RPFKVNK
        A I CA + + +I++G+++ + Y+  RPR P   ++   L+        +L   + +VV   N + ++   FS+  F L F    IA+   H  PF V K
Subjt:  AGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLFEGIEIASLVAH-RPFKVNK

Query:  MSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHL
           +   F + SS + +   Q Q L   L    +  +LRG+   R  +G L    +W    C +
Subjt:  MSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHL

AT5G45320.1 FUNCTIONS IN: molecular_function unknown1.5e-5152.08Show/hide
Query:  RH-THPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLFEGIEIASLV
        RH T P IW A IICA I++ VI+ GI++F+GY+ I PRVP ISV D HLD ++    G+L+ Q+ IV+R EN NA+AHA F  T+F L +EG  IA L 
Subjt:  RH-THPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLFEGIEIASLV

Query:  AHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQK
        A   F+V K   + L +LV+S  IPLNPT MQ + +++K+D++ F+L+G SRTRWRVG LG +KF C L+C LRF P + SY+P+PC+S  K
Subjt:  AHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACCAAATTTCCTATCCAGTCTAAAGCGACATACTCATCCTCTAATTTGGATTGCCGGCATAATCTGCGCCGCCATAGCTCTTGCAGTGATAATCGCAGGCATCGT
CATCTTCATCGGCTATGTGACGATCCGCCCTAGGGTACCTTCAATCAGTGTAACCGACGGACATCTCGACAGAATCCGAAGCAGCAGAACTGGATTGCTTGAAATCCAGA
TGAAGATCGTCGTCCGAGCCGAGAATCAAAATGCTAGGGCACACGCAAGCTTTTCACATACCGATTTCGTCCTGCTTTTTGAAGGCATAGAAATCGCATCACTAGTGGCT
CACCGGCCGTTCAAAGTAAACAAAATGAGTTACCTGGATTTGCATTTCTTAGTGGAATCGTCGGCGATTCCCCTCAATCCGACTCAGATGCAACATCTAAGCTGGTCGCT
GAAGAGGGATTTGATGCAATTCGATCTGAGAGGAAGCTCTAGAACTCGATGGCGAGTTGGGGTTTTGGGACCGCTCAAGTTTTGGTGCCGTTTGAACTGCCATCTCAGGT
TTTACCCGCACAATGGAAGCTACGTTCCCGCGCCTTGTTCTTCAAATCAGAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCACCAAATTTCCTATCCAGTCTAAAGCGACATACTCATCCTCTAATTTGGATTGCCGGCATAATCTGCGCCGCCATAGCTCTTGCAGTGATAATCGCAGGCATCGT
CATCTTCATCGGCTATGTGACGATCCGCCCTAGGGTACCTTCAATCAGTGTAACCGACGGACATCTCGACAGAATCCGAAGCAGCAGAACTGGATTGCTTGAAATCCAGA
TGAAGATCGTCGTCCGAGCCGAGAATCAAAATGCTAGGGCACACGCAAGCTTTTCACATACCGATTTCGTCCTGCTTTTTGAAGGCATAGAAATCGCATCACTAGTGGCT
CACCGGCCGTTCAAAGTAAACAAAATGAGTTACCTGGATTTGCATTTCTTAGTGGAATCGTCGGCGATTCCCCTCAATCCGACTCAGATGCAACATCTAAGCTGGTCGCT
GAAGAGGGATTTGATGCAATTCGATCTGAGAGGAAGCTCTAGAACTCGATGGCGAGTTGGGGTTTTGGGACCGCTCAAGTTTTGGTGCCGTTTGAACTGCCATCTCAGGT
TTTACCCGCACAATGGAAGCTACGTTCCCGCGCCTTGTTCTTCAAATCAGAAGTAA
Protein sequenceShow/hide protein sequence
MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEIQMKIVVRAENQNARAHASFSHTDFVLLFEGIEIASLVA
HRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLKFWCRLNCHLRFYPHNGSYVPAPCSSNQK