; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G018630 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G018630
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPhotosystem II 10 kDa polypeptide, chloroplastic
Genome locationchr04:25773873..25774639
RNA-Seq ExpressionLsi04G018630
SyntenyLsi04G018630
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009654 - photosystem II oxygen evolving complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR006814 - Photosystem II PsbR


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8365217.1 hypothetical protein BUALT_Bualt18G0081400 [Buddleja alternifolia]1.1e-1670.83Show/hide
Query:  SVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRK
        + + SSL+LKPS FAV++SA  RG    +PSLART+  RVEASG KKIKTDKPYGIGGGM+LR+GVDASGRK
Subjt:  SVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRK

KAG8386594.1 hypothetical protein BUALT_Bualt03G0164500 [Buddleja alternifolia]1.1e-1668.92Show/hide
Query:  SVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPT
        + V SS++LKPS FAV RSA  RG    +PSLART++ RV+ASG KKIKTDKP+GIGGGM+LR+G DASGRKPT
Subjt:  SVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPT

XP_011097661.1 photosystem II 10 kDa polypeptide, chloroplastic [Sesamum indicum]7.3e-1668.92Show/hide
Query:  SVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPT
        S V SS++LKP+ F  ++SA  RG    +PSLART+ FRV ASG KKIKTDKPYG+GGGM LRNGVDASGRKPT
Subjt:  SVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPT

XP_017245030.1 PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Daucus carota subsp. sativus]1.5e-1666.23Show/hide
Query:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPT
        MA SV+ SS++LKPS F+V++    RG    +PSLAR  SF+V+ASGVKKIKTD PYG GGGMNLR+G DASGRKPT
Subjt:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPT

XP_038899014.1 photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida]5.6e-2487.34Show/hide
Query:  MAISVV-ASSLTLKPSNFAVQRSATDRGRRVLIPSLART-SSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPT
        MAISVV ASSL+LKPSNFAVQRSA D  R V IPSLART SSF+VEASG KKIKTDKPYGIGGGMNLRNGVDASGRKPT
Subjt:  MAISVV-ASSLTLKPSNFAVQRSATDRGRRVLIPSLART-SSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPT

TrEMBL top hitse value%identityAlignment
A0A165Y8N7 Photosystem II 10 kDa polypeptide, chloroplastic7.2e-1766.23Show/hide
Query:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPT
        MA SV+ SS++LKPS F+V++    RG    +PSLAR  SF+V+ASGVKKIKTD PYG GGGMNLR+G DASGRKPT
Subjt:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPT

A0A2N9IHM1 Photosystem II 10 kDa polypeptide, chloroplastic7.9e-1669.74Show/hide
Query:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKP
        MA SV+A S++LKPS F  ++SA  RG    +PSLARTSSF+V+ASGVKKIKTD PYG GGGM LRNG+DASGRKP
Subjt:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKP

A0A540KF82 Photosystem II 10 kDa polypeptide, chloroplastic4.6e-1667.95Show/hide
Query:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTS-SFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPT
        M+ SV+A S++LKPS F V++SA  RG    +PSL+R+S SF+V+ASGVKKIKTD PYG GGGM LRNGVDASGRKPT
Subjt:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTS-SFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPT

A0A6I9UCR6 Photosystem II 10 kDa polypeptide, chloroplastic3.6e-1668.92Show/hide
Query:  SVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPT
        S V SS++LKP+ F  ++SA  RG    +PSLART+ FRV ASG KKIKTDKPYG+GGGM LRNGVDASGRKPT
Subjt:  SVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPT

B9SVD3 Photosystem II 10 kDa polypeptide, chloroplastic6.1e-1668.83Show/hide
Query:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPT
        MA SV+A S++LKPS F VQ+S++ RG    +P+L+R  +FR+EASG KKIKTDKPYGIGGGM LRNGVDASGRKPT
Subjt:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPT

SwissProt top hitse value%identityAlignment
P06183 Photosystem II 10 kDa polypeptide, chloroplastic1.2e-1362.16Show/hide
Query:  SVVASSLTLKPSNFAVQRSATDRGRRVLIPSLAR-TSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKP
        S V SSL+LKP+ F +++++  +G    +PSLAR +SSF+V ASGVKK+KTDKPYGI G M LR+GVDASGRKP
Subjt:  SVVASSLTLKPSNFAVQRSATDRGRRVLIPSLAR-TSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKP

P10690 Photosystem II 10 kDa polypeptide, chloroplastic4.5e-1664.1Show/hide
Query:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTS-SFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPT
        MA SV+ SSL+LKPS+F V   +  +G    +PSL+R+S SF V ASGVKKIK DKP GIGGGM LR+GVD+SGRKPT
Subjt:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTS-SFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPT

P27202 Photosystem II 10 kDa polypeptide, chloroplastic3.8e-1561.84Show/hide
Query:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLART-SSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRK
        MA SV+ SS+TLKP+ F V+++A  RG    +PSL R   SF++ ASGVKKIKTDKP+GI G M+LR+GVDASGRK
Subjt:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLART-SSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRK

P49108 Photosystem II 10 kDa polypeptide, chloroplastic2.9e-1561.04Show/hide
Query:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLART--SSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRK
        MA SV+ SS+TLKP+ F V++ +  RG    +PSL R   SSFR+ ASGVKKIKTDKP+G+ G M+LR+GVDASGRK
Subjt:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLART--SSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRK

Q40519 Photosystem II 10 kDa polypeptide, chloroplastic4.2e-1459.72Show/hide
Query:  VVASSLTLKPSNFAVQRSATDRGRRVLIPSLAR-TSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRK
        + ++ ++LKP+ F+V+++A  +G    +PSLAR +SSFRV+ASGVKK+KTDKPYGI G M+LR+GVDASGRK
Subjt:  VVASSLTLKPSNFAVQRSATDRGRRVLIPSLAR-TSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRK

Arabidopsis top hitse value%identityAlignment
AT1G79040.1 photosystem II subunit R2.7e-1661.84Show/hide
Query:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLART-SSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRK
        MA SV+ SS+TLKP+ F V+++A  RG    +PSL R   SF++ ASGVKKIKTDKP+GI G M+LR+GVDASGRK
Subjt:  MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLART-SSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAATCTCCGTCGTCGCTTCTTCTCTCACCCTCAAACCGTCCAATTTCGCCGTCCAGAGATCTGCGACTGATCGAGGCCGCCGTGTTTTAATTCCTTCACTCGCAAG
GACTTCTTCGTTCAGAGTCGAGGCCAGCGGCGTCAAGAAAATCAAGACTGATAAACCCTACGGAATCGGCGGCGGCATGAACTTGAGGAACGGCGTTGATGCGTCCGGGA
GGAAGCCGACGGTGAGATTGCAAAATGCTGATTCTCTCTGTAGAATTTTCCTTTCTTAA
mRNA sequenceShow/hide mRNA sequence
GATCAATCTGCAATATGCAAAATAGATTAAAGAGAGACCAAAAATGGAGGGAAGAGAATTACCGAATCATATCCAGCTTTGAACCACTCAAACTTTTCGGCTACGTGCTC
TCTTACCAATCACCACTCCCATTTCTCTCAGTAATTATATCGAACACTTCCTCTGCTCCAAGAATCGCCACAACGCAATCGCCTCTGTTCTTCTTCGCAAATGGCAATCT
CCGTCGTCGCTTCTTCTCTCACCCTCAAACCGTCCAATTTCGCCGTCCAGAGATCTGCGACTGATCGAGGCCGCCGTGTTTTAATTCCTTCACTCGCAAGGACTTCTTCG
TTCAGAGTCGAGGCCAGCGGCGTCAAGAAAATCAAGACTGATAAACCCTACGGAATCGGCGGCGGCATGAACTTGAGGAACGGCGTTGATGCGTCCGGGAGGAAGCCGAC
GGTGAGATTGCAAAATGCTGATTCTCTCTGTAGAATTTTCCTTTCTTAAATTGTAATTTGCTTCTGAAAGACCTCTTTGCATGAATGCTATCGGGATTTCGTTGGAATCT
TATTCCCCACGCTTCTAAATTTCTTCACGTTAACATGTTTTCATTTTATTTGATCAAAATTTTAAAAAGAATATATAAAATAAAATACTTACATCTATTATTATCTTTGT
GCATCAGTCTAAATGCTTC
Protein sequenceShow/hide protein sequence
MAISVVASSLTLKPSNFAVQRSATDRGRRVLIPSLARTSSFRVEASGVKKIKTDKPYGIGGGMNLRNGVDASGRKPTVRLQNADSLCRIFLS