CuGenDBv2

Gene ID	Lsi04G018700
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Biogenesis of lysosome-related organelles complex 1 subunit 7
Genome location	chr04:25843833..25845116
RNA-Seq Expression	Lsi04G018700
Synteny	Lsi04G018700
Gene Ontology terms	GO:0006886 - intracellular protein transport (biological process) GO:0031083 - BLOC-1 complex (cellular component)
InterPro domains	IPR017246 - Snapin IPR028119 - Snapin/Pallidin/Snn1

Homology

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GenBank top hits

e value

%identity

Alignment

XP_038897517.1 uncharacterized protein LOC120085558 isoform X2 [Benincasa hispida]

4.1e-58

89.51

Show/hide

Query:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLD----QLDQLLEDAPFP
        MHSPEKLD DYSANE+SN+ +EL TSISPNGDLQEGN  ENKNLGNSNALANGLSSMLINIIRDFDSKA DTLKSQS+LSSSLD    +LDQLLEDAPFP
Subjt:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLD----QLDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

XP_038897518.1 uncharacterized protein LOC120085558 isoform X3 [Benincasa hispida]

8.2e-59

89.58

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Query:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLD----QLDQLLEDAPFP
        MHSPEKLD DYSANE+SN+ +EL TSISPNGDLQEGN  ENKNLGNSNALANGLSSMLINIIRDFDSKA DTLKSQS+LSSSLD    +LDQLLEDAPFP
Subjt:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLD----QLDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPG
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPG
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPG

XP_038897519.1 uncharacterized protein LOC120085558 isoform X4 [Benincasa hispida]

4.1e-58

89.51

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Query:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLD----QLDQLLEDAPFP
        MHSPEKLD DYSANE+SN+ +EL TSISPNGDLQEGN  ENKNLGNSNALANGLSSMLINIIRDFDSKA DTLKSQS+LSSSLD    +LDQLLEDAPFP
Subjt:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLD----QLDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

XP_038897521.1 uncharacterized protein LOC120085558 isoform X5 [Benincasa hispida]

4.1e-58

89.51

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Query:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLD----QLDQLLEDAPFP
        MHSPEKLD DYSANE+SN+ +EL TSISPNGDLQEGN  ENKNLGNSNALANGLSSMLINIIRDFDSKA DTLKSQS+LSSSLD    +LDQLLEDAPFP
Subjt:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLD----QLDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

XP_038897522.1 uncharacterized protein LOC120085558 isoform X6 [Benincasa hispida]

6.3e-59

88.97

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Query:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLD----QLDQLLEDAPFP
        MHSPEKLD DYSANE+SN+ +EL TSISPNGDLQEGN  ENKNLGNSNALANGLSSMLINIIRDFDSKA DTLKSQS+LSSSLD    +LDQLLEDAPFP
Subjt:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLD----QLDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPGD
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPG+
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPGD

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BAU4 Biogenesis of lysosome-related organelles complex 1 subunit 7

1.3e-57

88.81

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Query:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLD----QLDQLLEDAPFP
        MH PEKLD+DYSANEDSN+SAEL TSISP GDLQEGN  ENKNLGNSNALANGLSSMLINIIRDFDSKA DTLKSQ+ LSSSLD    +LDQLLEDAPFP
Subjt:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLD----QLDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAI+MGNLP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

A0A6J1FEP4 Biogenesis of lysosome-related organelles complex 1 subunit 7

1.7e-46

79.02

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Query:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLD----QLDQLLEDAPFP
        MHSPEK+ +D  ANEDS++S EL TSIS NGDL+E N   N NL NSNALANGLSSMLINIIRDFDSKA DTLKSQS+LSSSLD    +LDQLLE APFP
Subjt:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLD----QLDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHASRIS+VRKRVLSLNSIL +IQRR+DNIDRAISMGN P
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

A0A6J1FHK0 Biogenesis of lysosome-related organelles complex 1 subunit 7

3.9e-46

76.22

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Query:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLD----QLDQLLEDAPFP
        MHS EK+ +D SAN+DS +SAEL  SISPNGD++E N   N NLG+SNALANGLSSML+NI+RDFDSKA DTLKSQS+LS SLD    +LDQLLEDAPFP
Subjt:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLD----QLDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHA RIS+VRKRVLSLNSILR++QRRVDNIDR ISM NLP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

A0A6J1FIR1 Biogenesis of lysosome-related organelles complex 1 subunit 7

3.9e-46

76.22

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Query:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLD----QLDQLLEDAPFP
        MHS EK+ +D SAN+DS +SAEL  SISPNGD++E N   N NLG+SNALANGLSSML+NI+RDFDSKA DTLKSQS+LS SLD    +LDQLLEDAPFP
Subjt:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLD----QLDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHA RIS+VRKRVLSLNSILR++QRRVDNIDR ISM NLP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

A0A6J1IKP2 Biogenesis of lysosome-related organelles complex 1 subunit 7

1.6e-47

79.72

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Query:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLD----QLDQLLEDAPFP
        MHSPEK+ +D  ANEDS+ S EL TSIS NG+L+E N   N NL NSNALANGLSSMLINIIRDFDSKA DTLKSQS+LSSSLD    +LDQLLEDAPFP
Subjt:  MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLD----QLDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHASRIS+VRKRVLSLNSILR+IQRR+DNIDRAISMGN P
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G79070.1 SNARE-associated protein-related

1.1e-24

52.38

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Query:  ANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLD----QLDQLLEDAPFPFIMQHASRISNV
        ++ D   SA+  TS   +   ++G  C     G   A+A GLS+ML ++I+DFDSKA DTL SQ ELS SLD    +LDQLLE+AP PFI+QHASRIS+V
Subjt:  ANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLD----QLDQLLEDAPFPFIMQHASRISNV

Query:  RKRVLSLNSILRTIQRRVDNIDRAIS
        ++RV SLN +L+++QRR+DNID  +S
Subjt:  RKRVLSLNSILRTIQRRVDNIDRAIS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCACAGTCCGGAGAAATTGGATGAAGATTATTCTGCCAATGAGGACAGCAACCTCTCGGCTGAATTAGGGACTTCCATTAGTCCCAATGGTGATCTCCAGGAAGGAAA
TGGTTGTGAAAATAAGAACTTGGGGAACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATCAACATTATAAGGGATTTTGACTCCAAAGCTGGTGATACTCTTA
AAAGCCAGAGCGAGCTTTCATCTTCCCTTGATCAACTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGGATTTCTAATGTAAGAAAG
AGAGTTTTGTCACTAAATTCCATCTTAAGAACCATACAACGAAGAGTGGATAACATAGATCGGGCAATCTCGATGGGCAATCTACCAGGTGATTGA

mRNA sequence

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Protein sequence

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MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDQLDQLLEDAPFPFIMQHASRISNVRK
RVLSLNSILRTIQRRVDNIDRAISMGNLPGD

Lsi04G018700 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome