; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G018900 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G018900
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionHomeodomain-like superfamily protein
Genome locationchr04:26055820..26056589
RNA-Seq ExpressionLsi04G018900
SyntenyLsi04G018900
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR006447 - Myb domain, plants
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044848 - PHR1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032869.1 putative Myb family transcription factor [Cucumis melo var. makuwa]1.4e-3094.44Show/hide
Query:  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQFDA
        MKSC S+RIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPK+ILQMMGVKGLKISHIKSHLQF A
Subjt:  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQFDA

KAG6591802.1 putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp. sororia]2.4e-3098.55Show/hide
Query:  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
        MKSC SERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
Subjt:  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ

KAG6591830.1 putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp. sororia]2.4e-3098.55Show/hide
Query:  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
        MKSC SERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
Subjt:  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ

XP_022937030.1 putative Myb family transcription factor At1g14600 [Cucurbita moschata]2.4e-3098.55Show/hide
Query:  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
        MKSC SERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
Subjt:  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ

XP_023536489.1 probable transcription factor KAN4 [Cucurbita pepo subsp. pepo]2.4e-3098.55Show/hide
Query:  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
        MKSC SERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
Subjt:  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ

TrEMBL top hitse value%identityAlignment
A0A1S3CS11 putative Myb family transcription factor At1g146005.9e-3095.65Show/hide
Query:  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
        MKSC S+RIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPK+ILQMMGVKGLKISHIKSHLQ
Subjt:  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ

A0A5D3CGB2 Putative Myb family transcription factor6.9e-3194.44Show/hide
Query:  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQFDA
        MKSC S+RIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPK+ILQMMGVKGLKISHIKSHLQF A
Subjt:  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQFDA

A0A6J1FFE3 putative Myb family transcription factor At1g146001.2e-3098.55Show/hide
Query:  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
        MKSC SERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
Subjt:  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ

A0A6J1IGV1 putative Myb family transcription factor At1g146003.4e-3097.1Show/hide
Query:  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
        MKSC SERIGVR+YNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
Subjt:  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ

A0A6J1J4K7 probable transcription factor KAN37.7e-3095.65Show/hide
Query:  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
        MKSC SERIGVRQYNKSELPRLRWTP LHRYFVQTVE+LGGRNQATPKRILQMMGVKGLKISHIKSHLQ
Subjt:  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ

SwissProt top hitse value%identityAlignment
A0A0P0X0C0 Myb family transcription factor MPH13.3e-2274.6Show/hide
Query:  ERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
        ER GVRQYN+SE+PR+RWT E+HR FV+ VE LGG+++ATPKRILQ+MGVKG+ ISHIKSHLQ
Subjt:  ERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ

A3AWH5 Myb family transcription factor MOF15.0e-1871.19Show/hide
Query:  VRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
        VRQY +S++PRLRWT ELH  FVQ +E LGG+++ATPK ILQ+MGVKGL ISH+KSHLQ
Subjt:  VRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ

Q700D9 Putative Myb family transcription factor At1g146002.5e-1766.67Show/hide
Query:  GVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
        GVR Y +S +PRLRWTPELHR FV  V++LGG+ +ATPK +L++M VKGL ISH+KSHLQ
Subjt:  GVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ

Q9FJV5 Probable transcription factor KAN45.3e-1245.59Show/hide
Query:  KSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
        K   S  +G+++  ++  PR+RWT  LH +FV  V++LGG  +ATPK +L++M VK L ++H+KSHLQ
Subjt:  KSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ

Q9SAK5 Myb family transcription factor APL9.1e-1264Show/hide
Query:  PRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
        PRLRWT ELH  FV  V  LGG ++ATPK I+++MGVKGL + H+KSHLQ
Subjt:  PRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ

Arabidopsis top hitse value%identityAlignment
AT1G14600.1 Homeodomain-like superfamily protein1.7e-1866.67Show/hide
Query:  GVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
        GVR Y +S +PRLRWTPELHR FV  V++LGG+ +ATPK +L++M VKGL ISH+KSHLQ
Subjt:  GVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ

AT2G02060.1 Homeodomain-like superfamily protein1.6e-1970Show/hide
Query:  GVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
        GVR Y +S +PRLRWTP+LHR FV  VEILGG+++ATPK +L+MM VKGL ISH+KSHLQ
Subjt:  GVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ

AT2G38300.1 myb-like HTH transcriptional regulator family protein5.6e-1762.71Show/hide
Query:  VRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
        VR Y +S++PRLRWTP+LH  FV+ VE LGG+ +ATPK + QMM +KGL I+H+KSHLQ
Subjt:  VRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ

AT2G40260.1 Homeodomain-like superfamily protein2.3e-1867.8Show/hide
Query:  VRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
        VR YN+S+ PRLRWTPELH  F+Q VE LGG ++ATPK +LQ+M VKGL I+H+KSHLQ
Subjt:  VRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ

AT2G42660.1 Homeodomain-like superfamily protein3.3e-1762.71Show/hide
Query:  VRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ
        VRQY +S +PRLRWTP+LH  FV+ V+ LGG ++ATPK +L+MM +KGL I+H+KSHLQ
Subjt:  VRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCCTGTTTATCGGAGAGAATCGGAGTTAGACAGTACAATAAATCGGAACTTCCGCGGTTGCGGTGGACGCCGGAGCTTCATCGGTACTTCGTTCAGACAGTCGA
GATCCTTGGCGGAAGAAATCAAGCAACGCCGAAAAGAATCCTGCAAATGATGGGAGTGAAAGGACTGAAGATTTCACACATAAAGAGCCATTTACAGTTTGATGCGATC
mRNA sequenceShow/hide mRNA sequence
GGGCGTTAGACTGGAGAGGATTTTTCGGTTTCTGCCTTTCTATAATTGCTGCTGCTCGTCTCCGATTCTCTCTTCGCTTCGATTTCTGTGATCTCCTCCCTCCATTCACG
AATTTGAAACGAATTTCAAAATCAACGTCCTCTTCATCATCTGAATTTACCTAACGATTTCATCAATCGATTTTCCTCTTTTCGTCTTCATCGGTTGTTGTATGACGATT
CAATCTTCTTCATTGTTATAATCAGAATATTTCTTCGTTTTTTGCCAAAAAAGAAGATGAAATCCTGTTTATCGGAGAGAATCGGAGTTAGACAGTACAATAAATCGGAA
CTTCCGCGGTTGCGGTGGACGCCGGAGCTTCATCGGTACTTCGTTCAGACAGTCGAGATCCTTGGCGGAAGAAATCAAGCAACGCCGAAAAGAATCCTGCAAATGATGGG
AGTGAAAGGACTGAAGATTTCACACATAAAGAGCCATTTACAGTTTGATGCGATC
Protein sequenceShow/hide protein sequence
MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQFDAI