; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G018910 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G018910
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionHTH myb-type domain-containing protein
Genome locationchr04:26060293..26061778
RNA-Seq ExpressionLsi04G018910
SyntenyLsi04G018910
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008466796.1 PREDICTED: putative Myb family transcription factor At1g14600 [Cucumis melo]1.7e-2885.23Show/hide
Query:  RNDSDSDSDSEEECIGGSMLEDQTCDCELTLSLKPSMTQQILERQLSD-QDNN-SSSNSISISQLN--FVQLKEFSHPHHHINLDLTI
        + DSDS+S+SEEEC+G SMLEDQTCDCELTLSLKPSMTQQILERQLSD QDNN SSSNSISISQLN  FV+LK+F HPHHHINLDLTI
Subjt:  RNDSDSDSDSEEECIGGSMLEDQTCDCELTLSLKPSMTQQILERQLSD-QDNN-SSSNSISISQLN--FVQLKEFSHPHHHINLDLTI

XP_011653983.1 myb family transcription factor PHL12 [Cucumis sativus]1.9e-2477.78Show/hide
Query:  SDSDSDSEEECIGGSMLEDQTCDCELTLSLKPSMTQQILERQLSD-QDN-----NSSSNSI-SISQLN--FVQLKEFSHPHHHINLDLTI
        S+S+S+SEEEC+G SMLEDQTCDCELTLSLKPSMTQQI+ERQLSD QDN     NS+SNS+ SISQLN  FV+LK+F HPHHHINLDLTI
Subjt:  SDSDSDSEEECIGGSMLEDQTCDCELTLSLKPSMTQQILERQLSD-QDN-----NSSSNSI-SISQLN--FVQLKEFSHPHHHINLDLTI

XP_022141381.1 probable transcription factor KAN3 [Momordica charantia]1.4e-0949.5Show/hide
Query:  SDSDSEEECIGGSM-------LEDQTCDCELTLSLKPSMT---------QQILERQL------SDQDNNSSSNSISISQLNFVQLKEFSHPHHHINLDLT
        S  DS+  C+ G M       + +QTCDCEL+LSLKPS +         +QILER+L      +D    ++S S S SQLNFV+LKE S PHHHINLDLT
Subjt:  SDSDSEEECIGGSM-------LEDQTCDCELTLSLKPSMT---------QQILERQL------SDQDNNSSSNSISISQLNFVQLKEFSHPHHHINLDLT

Query:  I
        I
Subjt:  I

XP_023525384.1 probable transcription factor KAN3 isoform X1 [Cucurbita pepo subsp. pepo]3.0e-0954.55Show/hide
Query:  RNDSDSDSDS----EEECIGGSMLEDQTCDCELTLSLKPS----MTQQILERQLS-------DQDNNSSSNSISISQLNFVQLKEFSHPHHHINLDLTI
        + DSDS  +S    E ECIGGSMLEDQT  CEL+LSLKP+    +TQQIL+RQL         Q  N+S         NFV+L EF HP HHINLDLTI
Subjt:  RNDSDSDSDS----EEECIGGSMLEDQTCDCELTLSLKPS----MTQQILERQLS-------DQDNNSSSNSISISQLNFVQLKEFSHPHHHINLDLTI

XP_038899444.1 myb family transcription factor MPH1-like [Benincasa hispida]3.9e-3392.77Show/hide
Query:  NDSDSDSDSEEECIGGSMLEDQTCDCELTLSLKPSMTQQILERQLSDQDNNSSSNSISISQLNFVQLKEFSHPHHHINLDLTI
        +DS+S+S+SEEECIGGSMLEDQTCDCELTLSLKPSMTQQILERQLSDQDNNSSSNSISISQLNFV LKEFSHPH HINLDLTI
Subjt:  NDSDSDSDSEEECIGGSMLEDQTCDCELTLSLKPSMTQQILERQLSDQDNNSSSNSISISQLNFVQLKEFSHPHHHINLDLTI

TrEMBL top hitse value%identityAlignment
A0A0A0KZQ0 HTH myb-type domain-containing protein9.4e-2577.78Show/hide
Query:  SDSDSDSEEECIGGSMLEDQTCDCELTLSLKPSMTQQILERQLSD-QDN-----NSSSNSI-SISQLN--FVQLKEFSHPHHHINLDLTI
        S+S+S+SEEEC+G SMLEDQTCDCELTLSLKPSMTQQI+ERQLSD QDN     NS+SNS+ SISQLN  FV+LK+F HPHHHINLDLTI
Subjt:  SDSDSDSEEECIGGSMLEDQTCDCELTLSLKPSMTQQILERQLSD-QDN-----NSSSNSI-SISQLN--FVQLKEFSHPHHHINLDLTI

A0A1S3CS11 putative Myb family transcription factor At1g146008.2e-2985.23Show/hide
Query:  RNDSDSDSDSEEECIGGSMLEDQTCDCELTLSLKPSMTQQILERQLSD-QDNN-SSSNSISISQLN--FVQLKEFSHPHHHINLDLTI
        + DSDS+S+SEEEC+G SMLEDQTCDCELTLSLKPSMTQQILERQLSD QDNN SSSNSISISQLN  FV+LK+F HPHHHINLDLTI
Subjt:  RNDSDSDSDSEEECIGGSMLEDQTCDCELTLSLKPSMTQQILERQLSD-QDNN-SSSNSISISQLN--FVQLKEFSHPHHHINLDLTI

A0A6J1CJ05 probable transcription factor KAN36.5e-1049.5Show/hide
Query:  SDSDSEEECIGGSM-------LEDQTCDCELTLSLKPSMT---------QQILERQL------SDQDNNSSSNSISISQLNFVQLKEFSHPHHHINLDLT
        S  DS+  C+ G M       + +QTCDCEL+LSLKPS +         +QILER+L      +D    ++S S S SQLNFV+LKE S PHHHINLDLT
Subjt:  SDSDSEEECIGGSM-------LEDQTCDCELTLSLKPSMT---------QQILERQL------SDQDNNSSSNSISISQLNFVQLKEFSHPHHHINLDLT

Query:  I
        I
Subjt:  I

A0A6J1FNB8 probable transcription factor KAN47.2e-0954.55Show/hide
Query:  RNDSDSDSDS----EEECIGGSMLEDQTCDCELTLSLKPS----MTQQILERQLS-------DQDNNSSSNSISISQLNFVQLKEFSHPHHHINLDLTI
        + DSDS  +S    E ECIGGSMLEDQT  CEL+LSLKP+    +TQQILERQL         Q  N+S         NFV+L EF HP H INLDLTI
Subjt:  RNDSDSDSDS----EEECIGGSMLEDQTCDCELTLSLKPS----MTQQILERQLS-------DQDNNSSSNSISISQLNFVQLKEFSHPHHHINLDLTI

A0A6J1J4K7 probable transcription factor KAN34.2e-0954.55Show/hide
Query:  RNDSDSDSDS----EEECIGGSMLEDQTCDCELTLSLKPS----MTQQILERQLS-------DQDNNSSSNSISISQLNFVQLKEFSHPHHHINLDLTI
        + DSDS  +S    E ECIGGSMLEDQT  CEL+LSLKP+    +TQQILERQL         Q  N+S         NFV+  EF HP HHINLDLTI
Subjt:  RNDSDSDSDS----EEECIGGSMLEDQTCDCELTLSLKPS----MTQQILERQLS-------DQDNNSSSNSISISQLNFVQLKEFSHPHHHINLDLTI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGATTATTTTGAGCTATAGTATGATCGAGCCATACACAATTATTCATGCCCTCCCTTTGGTATATAAATATGTTCTAGTGGCTTCAACGATGAAACTCCTTTCATT
GAGAAATGATTCAGATTCAGATTCAGATTCAGAGGAAGAATGCATTGGTGGGTCAATGTTAGAAGATCAAACATGTGATTGTGAACTCACATTATCCCTCAAACCTTCAA
TGACACAACAAATTCTAGAGAGACAGTTAAGTGATCAAGATAACAACAGCTCTTCAAATTCTATCTCCATTTCCCAACTTAATTTTGTACAGCTGAAAGAATTCTCCCAT
CCTCACCACCATATCAATTTGGACCTAACCATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACGATTATTTTGAGCTATAGTATGATCGAGCCATACACAATTATTCATGCCCTCCCTTTGGTATATAAATATGTTCTAGTGGCTTCAACGATGAAACTCCTTTCATT
GAGAAATGATTCAGATTCAGATTCAGATTCAGAGGAAGAATGCATTGGTGGGTCAATGTTAGAAGATCAAACATGTGATTGTGAACTCACATTATCCCTCAAACCTTCAA
TGACACAACAAATTCTAGAGAGACAGTTAAGTGATCAAGATAACAACAGCTCTTCAAATTCTATCTCCATTTCCCAACTTAATTTTGTACAGCTGAAAGAATTCTCCCAT
CCTCACCACCATATCAATTTGGACCTAACCATTTGAAACCCTCAACTCTTCCATTTTATTTATAGCTTTAGGTATATTTTATTACACTTTTCTGTCGATTACATGTCATG
TTTTGTTGTAATGCTCGTGA
Protein sequenceShow/hide protein sequence
MTIILSYSMIEPYTIIHALPLVYKYVLVASTMKLLSLRNDSDSDSDSEEECIGGSMLEDQTCDCELTLSLKPSMTQQILERQLSDQDNNSSSNSISISQLNFVQLKEFSH
PHHHINLDLTI