; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G018920 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G018920
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTRAM/LAG1/CLN8 domain containing protein
Genome locationchr04:26062450..26071990
RNA-Seq ExpressionLsi04G018920
SyntenyLsi04G018920
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR006634 - TRAM/LAG1/CLN8 homology domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK09405.1 transmembrane protein 56-like [Cucumis melo var. makuwa]2.8e-7090.68Show/hide
Query:  MSLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFR
        MSLKSQAEQLLKYLVLSDPVVPYISIPAG+LASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHA+FITAAALYMVFLSDLYSDRYFG ITFR
Subjt:  MSLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFR

Query:  SSTISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG
        SSTISTFGLGVSVGYFITD+ MI WFYPA+GGMEY        VIHHLLSLLAVAYAMLTG
Subjt:  SSTISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG

XP_008466799.1 PREDICTED: transmembrane protein 56-like [Cucumis melo]2.8e-7090.68Show/hide
Query:  MSLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFR
        MSLKSQAEQLLKYLVLSDPVVPYISIPAG+LASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHA+FITAAALYMVFLSDLYSDRYFG ITFR
Subjt:  MSLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFR

Query:  SSTISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG
        SSTISTFGLGVSVGYFITD+ MI WFYPA+GGMEY        VIHHLLSLLAVAYAMLTG
Subjt:  SSTISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG

XP_011653984.1 TLC domain-containing protein 4 [Cucumis sativus]2.2e-6786.96Show/hide
Query:  MSLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFR
        MSLKSQA +LLKYLVLSDPVVPYISIPAG+LASKLVYDLTD+IS VYFKSYSNLSRIQRVEWNNRAMSTVHA+FITAAALYMVFLSDLYSD+YFG ITFR
Subjt:  MSLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFR

Query:  SSTISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG
        +STISTFGLGVSVGYFITD+ MI WFYPA+GGMEY        VIHHLLSLLAVAYAMLTG
Subjt:  SSTISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG

XP_022940088.1 transmembrane protein 56-like [Cucurbita moschata]2.2e-6787.5Show/hide
Query:  SLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFRS
        S +SQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQR+EWNNRAMST+HA+FITAA+LYMVFLSDLYSDRYFG ITFRS
Subjt:  SLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFRS

Query:  STISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG
        STISTF LGVSVGYFITD+GMI WFYP+LGGMEY        VIHHLLSL+AVAYAMLTG
Subjt:  STISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG

XP_038899443.1 LOW QUALITY PROTEIN: TLC domain-containing protein 4-like [Benincasa hispida]1.6e-7090.68Show/hide
Query:  MSLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFR
        MSLKSQAEQLLKYLVLSDP VPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYF L+TFR
Subjt:  MSLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFR

Query:  SSTISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG
        SSTISTFGLGVSVGYFITD+GMI WFYPA+GGMEY        VIHHLLSL+AVAYAMLTG
Subjt:  SSTISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG

TrEMBL top hitse value%identityAlignment
A0A0A0L1M1 TLC domain-containing protein1.1e-6786.96Show/hide
Query:  MSLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFR
        MSLKSQA +LLKYLVLSDPVVPYISIPAG+LASKLVYDLTD+IS VYFKSYSNLSRIQRVEWNNRAMSTVHA+FITAAALYMVFLSDLYSD+YFG ITFR
Subjt:  MSLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFR

Query:  SSTISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG
        +STISTFGLGVSVGYFITD+ MI WFYPA+GGMEY        VIHHLLSLLAVAYAMLTG
Subjt:  SSTISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG

A0A1S3CS93 transmembrane protein 56-like1.3e-7090.68Show/hide
Query:  MSLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFR
        MSLKSQAEQLLKYLVLSDPVVPYISIPAG+LASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHA+FITAAALYMVFLSDLYSDRYFG ITFR
Subjt:  MSLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFR

Query:  SSTISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG
        SSTISTFGLGVSVGYFITD+ MI WFYPA+GGMEY        VIHHLLSLLAVAYAMLTG
Subjt:  SSTISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG

A0A5D3CD10 Transmembrane protein 56-like1.3e-7090.68Show/hide
Query:  MSLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFR
        MSLKSQAEQLLKYLVLSDPVVPYISIPAG+LASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHA+FITAAALYMVFLSDLYSDRYFG ITFR
Subjt:  MSLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFR

Query:  SSTISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG
        SSTISTFGLGVSVGYFITD+ MI WFYPA+GGMEY        VIHHLLSLLAVAYAMLTG
Subjt:  SSTISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG

A0A6J1FJ18 transmembrane protein 56-like1.1e-6787.5Show/hide
Query:  SLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFRS
        S +SQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQR+EWNNRAMST+HA+FITAA+LYMVFLSDLYSDRYFG ITFRS
Subjt:  SLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFRS

Query:  STISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG
        STISTF LGVSVGYFITD+GMI WFYP+LGGMEY        VIHHLLSL+AVAYAMLTG
Subjt:  STISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG

A0A6J1IGT7 transmembrane protein 56-like2.4e-6785.62Show/hide
Query:  SLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFRS
        S +SQAEQLLKYLVLSDPVVPYISIPAGILASKLVYD+TDLISGVYFKSYSNLSRIQRVEWNNRAMST+HA+FITAA+LYMVFLSDL+SDRYFGLITFRS
Subjt:  SLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFRS

Query:  STISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG
        ST+S FGLGVS GYF TD+GMI WFYP LGGMEY        V+HHLLSLLAVAYAMLTG
Subjt:  STISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G31300.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein2.2e-4152.17Show/hide
Query:  SLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFG-LITFR
        S   QA+ L+K  +L+DP +PY S+  GI   K+VYDL   IS  + K+Y  L++IQR+EWNNR +STVHA+FI+A +LY VF SDL+SDR+   L+ FR
Subjt:  SLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFG-LITFR

Query:  SSTISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG
        SS +S+ GLG+S+GYF+ D+GMIFW YP+LGG+EY        ++HH LS +AVAY++ +G
Subjt:  SSTISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG

AT1G31300.2 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein2.2e-4152.17Show/hide
Query:  SLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFG-LITFR
        S   QA+ L+K  +L+DP +PY S+  GI   K+VYDL   IS  + K+Y  L++IQR+EWNNR +STVHA+FI+A +LY VF SDL+SDR+   L+ FR
Subjt:  SLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFG-LITFR

Query:  SSTISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG
        SS +S+ GLG+S+GYF+ D+GMIFW YP+LGG+EY        ++HH LS +AVAY++ +G
Subjt:  SSTISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTG

AT4G10360.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein6.5e-2542.14Show/hide
Query:  SIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFRSST-ISTFGLGVSVGYFITDIGMI
        SI +G L  K+VYDLT  IS + F  Y  L    R+EWNNR  ST HAVF + A++Y + +SD + +   G     S+T +S   +G+S+GYF+ D+ MI
Subjt:  SIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFRSST-ISTFGLGVSVGYFITDIGMI

Query:  FWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTGSS
        FW++P LGG+EY        V HH LS+ A+  ++ +G S
Subjt:  FWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTGSS

AT4G19645.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein9.0e-4353.05Show/hide
Query:  SLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDR--YFGLITF
        S ++QAE  +++ +L+DP +PY S+  GI   KLVYDLT+L S ++ KSYS L++I+R+EWNNR +STVHA+FI+  ALY  F SDL+SD+     L  F
Subjt:  SLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDR--YFGLITF

Query:  RSSTISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTGSS
        R+S +STFGLGVSVGYF+ D+GMIFW YP+LGG EY        ++HH LS  AVAY++ +G +
Subjt:  RSSTISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTGSS

AT4G19645.2 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein9.0e-4353.05Show/hide
Query:  SLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDR--YFGLITF
        S ++QAE  +++ +L+DP +PY S+  GI   KLVYDLT+L S ++ KSYS L++I+R+EWNNR +STVHA+FI+  ALY  F SDL+SD+     L  F
Subjt:  SLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDR--YFGLITF

Query:  RSSTISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTGSS
        R+S +STFGLGVSVGYF+ D+GMIFW YP+LGG EY        ++HH LS  AVAY++ +G +
Subjt:  RSSTISTFGLGVSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTGSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACTAAAGAGCCAGGCTGAGCAACTACTTAAGTATCTTGTACTATCAGATCCTGTTGTACCATACATTTCCATTCCCGCAGGCATACTTGCTAGCAAATTGGTCTA
TGATCTGACTGATTTGATCAGCGGTGTTTACTTCAAGAGCTATTCTAACCTTTCTAGGATTCAGCGGGTGGAGTGGAACAACCGGGCAATGTCAACTGTCCATGCCGTTT
TCATCACAGCAGCAGCATTATACATGGTGTTTCTGTCAGATCTCTATTCTGACCGATATTTTGGCCTTATTACCTTTCGCAGTTCAACAATATCTACATTTGGCCTGGGA
GTGTCTGTCGGTTACTTCATAACTGATATCGGGATGATCTTTTGGTTTTATCCTGCACTTGGTGGAATGGAGTATGAGGTGACAATGTTGTTTTTTCAGGTGATACATCA
TCTCCTCTCTCTCTTAGCTGTGGCCTATGCTATGTTGACTGGTTCTTCAGATGCACGTTTTCGGGCAATTTTTGGTTTTCGTGGTTCCATTGGTATTATCGGTCATGAAC
TTGACGTGGTTCGCTAA
mRNA sequenceShow/hide mRNA sequence
TTCGTATTATGGTGGTTAAAGCTAACGAGCGCAGCGTAGCGTGAGAAAAGAAGAGACTAAAGTATTGTTTGTGCGTTGCTTTGGGCCCAATTACCTGAGCCTAATCCTTC
CCTCTCTCTTTCTTCCATCTCTAACAGAATTTTTTTTTCGTCTTTCCATTGCCCTTCCATCTATTCGCCTTCTTCTTTTTCTTCCTCATTTTCATTATCATTCGCATTTT
CCGCCTTTTACCTACTCGTTTTTTTCGTTTTTAATCTATCTCCGCTGTTGTTATTGTTTGCTGATTCTTCTCCGCCGCTTCGCGACGTTTTCTGGTGATTTTCCGGTGTA
AAGAGGTAGAGAAGAAGTTAAAGATTTGGAGGAACAGCGCATCTTGTTGTTTGTTTTGAAACCGTAGCATGCTGTAACCCAAGATTGAAACAAGCAATCATGTCACTAAA
GAGCCAGGCTGAGCAACTACTTAAGTATCTTGTACTATCAGATCCTGTTGTACCATACATTTCCATTCCCGCAGGCATACTTGCTAGCAAATTGGTCTATGATCTGACTG
ATTTGATCAGCGGTGTTTACTTCAAGAGCTATTCTAACCTTTCTAGGATTCAGCGGGTGGAGTGGAACAACCGGGCAATGTCAACTGTCCATGCCGTTTTCATCACAGCA
GCAGCATTATACATGGTGTTTCTGTCAGATCTCTATTCTGACCGATATTTTGGCCTTATTACCTTTCGCAGTTCAACAATATCTACATTTGGCCTGGGAGTGTCTGTCGG
TTACTTCATAACTGATATCGGGATGATCTTTTGGTTTTATCCTGCACTTGGTGGAATGGAGTATGAGGTGACAATGTTGTTTTTTCAGGTGATACATCATCTCCTCTCTC
TCTTAGCTGTGGCCTATGCTATGTTGACTGGTTCTTCAGATGCACGTTTTCGGGCAATTTTTGGTTTTCGTGGTTCCATTGGTATTATCGGTCATGAACTTGACGTGGTT
CGCTAAAATATTCAGAGGATTGAAAAAGACATTAGCAAAGAGACAATGAAAACCAAAGAAAACATCTGTTCTCCTATTTGGGCCAACATTGTGACATAAAGGTAGCTTAA
AAGGTCTTTTTCTTGGCCAACACCTCACCACTTGTACATGCTGAAGTTGCAAAATTGTACAATTTCATGTTGAAATAAGTACATAGATAGCCATTCTAGTAGGAAAAATG
TTGGGAAAAAAAGTAGCATAATTTAATGAATAATGATTGTTTATTGTAGATATATAGGAAGGATTCTTTTTTGTTTTTT
Protein sequenceShow/hide protein sequence
MSLKSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRVEWNNRAMSTVHAVFITAAALYMVFLSDLYSDRYFGLITFRSSTISTFGLG
VSVGYFITDIGMIFWFYPALGGMEYEVTMLFFQVIHHLLSLLAVAYAMLTGSSDARFRAIFGFRGSIGIIGHELDVVR