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Lsi04G019200 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G019200
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCYSTM domain-containing protein
Genome locationchr04:26400561..26402760
RNA-Seq ExpressionLsi04G019200
SyntenyLsi04G019200
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR028144 - Cysteine-rich transmembrane CYSTM domain
IPR044850 - Cysteine-rich and transmembrane domain-containing protein WIH1/2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3953656.1 hypothetical protein CMV_020922 [Castanea mollissima]8.2e-2376.06Show/hide
Query:  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        MSS++PA  YPPPST P  Y APPPAGYPT+DG  +SQ  P P ETKSRG+GFWKGCCAALCCCCVLDACF
Subjt:  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

KAF3972548.1 hypothetical protein CMV_003960 [Castanea mollissima]2.8e-2377.46Show/hide
Query:  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        MSS++PA  YPPPST P  Y APPPAGYPT+DG  +SQ  P P ETKSRGDGFWKGCCAALCCCCVLDACF
Subjt:  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

KAG6591814.1 hypothetical protein SDJN03_14160, partial [Cucurbita argyrosperma subsp. sororia]3.7e-3195.77Show/hide
Query:  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        MSS QPA VYPPPST+PTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
Subjt:  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

XP_022137938.1 cysteine-rich and transmembrane domain-containing protein WIH2-like [Momordica charantia]4.0e-3092.96Show/hide
Query:  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        MSSAQPA VYPPPST P SYAAPPPAGYPTRDGGDFSQP PVPAETKSRGDGFWKGCCAA+CCCCVLDACF
Subjt:  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

XP_031739667.1 cysteine-rich and transmembrane domain-containing protein WIH1-like [Cucumis sativus]7.9e-2690.41Show/hide
Query:  MSSAQPAGV-YPPP-STVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        MSSAQPAGV YPPP STVPTSY+APPPAGYPTR+GGDFS   PVPAETKSRGDGFWKGCCAALCCCCVLDACF
Subjt:  MSSAQPAGV-YPPP-STVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

TrEMBL top hitse value%identityAlignment
A0A0A0L4C6 CYSTM domain-containing protein3.8e-2690.41Show/hide
Query:  MSSAQPAGV-YPPP-STVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        MSSAQPAGV YPPP STVPTSY+APPPAGYPTR+GGDFS   PVPAETKSRGDGFWKGCCAALCCCCVLDACF
Subjt:  MSSAQPAGV-YPPP-STVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

A0A6J1CBQ4 cysteine-rich and transmembrane domain-containing protein WIH2-like2.0e-3092.96Show/hide
Query:  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        MSSAQPA VYPPPST P SYAAPPPAGYPTRDGGDFSQP PVPAETKSRGDGFWKGCCAA+CCCCVLDACF
Subjt:  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

A0A7N2LG73 CYSTM domain-containing protein3.0e-2376.06Show/hide
Query:  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        MSS++PA  YPPPST P  Y APPPAGYPT+DG  +SQ  P P ETKSRGDGFWKGCCAALCCCCV+DACF
Subjt:  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

A0A7N2LJ98 CYSTM domain-containing protein2.6e-2274.65Show/hide
Query:  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        MSS++PA  YPPPST PT Y A PPAGYPT+DG  +SQ  P P ETKSRGDGFWKGCCAALCCCC LD CF
Subjt:  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

A0A7N2R3F7 CYSTM domain-containing protein2.3e-2377.46Show/hide
Query:  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        MSS++PA  YPPPSTVP  Y APPPAGYPT+DG  + Q  P P ETKSRGDGFWKGCCAALCCCCVLDACF
Subjt:  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G05340.1 unknown protein1.3e-1055.22Show/hide
Query:  QPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        Q AG  PPP  + T  + PPP GYPT      S  A    ETKS+GDGF+KGC AA+CCCC LD CF
Subjt:  QPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

AT2G32190.1 unknown protein2.5e-1457.14Show/hide
Query:  SSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        S  Q +G YP P      Y  PPP GYPT    D S     P ETKS+GDGF KGC AA+CCCCVLDACF
Subjt:  SSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

AT2G32200.1 unknown protein1.9e-0951.39Show/hide
Query:  SSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRG---DGFWKGCCAALCCCCVLDAC
        S  Q AG YP P      Y APPP GYPT    D +     P ETKS+G   DGF KGC A +  CCVLDAC
Subjt:  SSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRG---DGFWKGCCAALCCCCVLDAC

AT2G32210.1 unknown protein9.7e-1457.14Show/hide
Query:  SSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        S  Q +G YP P      Y APPP GYPT    D S       ETKS+GDGF KGC AA+CCCCVLDACF
Subjt:  SSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

AT3G22240.1 unknown protein3.0e-1563.08Show/hide
Query:  VYPPPSTVPTSYAAPPPAGYPTRDG--GDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        V  P  T    Y +PPP GYPTRD   GD   P     ETKS+GDGFWKGCCAA+CCCCVLDACF
Subjt:  VYPPPSTVPTSYAAPPPAGYPTRDG--GDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCCGCTCAGCCTGCAGGTGTTTATCCTCCACCCTCCACCGTGCCGACATCTTATGCAGCTCCACCGCCGGCGGGGTATCCGACGAGAGACGGCGGAGACTTCTC
TCAACCCGCCCCTGTTCCGGCTGAAACCAAGTCTAGAGGCGATGGCTTTTGGAAAGGCTGTTGTGCTGCGTTGTGTTGCTGCTGCGTGTTGGATGCATGCTTCTAA
mRNA sequenceShow/hide mRNA sequence
GTATTTTCGTAATTTAGAAAGGAAAAAAAACTAATATAATTACTTAGCTTCCTCTCTGTTGCTTGTGCATAGTGTAAAAAGCACCTACTCTCTCTCTCTGTCTTGATATT
CTCTCTTCCTTTCACGCGGTTTCGCCGCCCTTGGTCGGCCCCTCTCCCACACCACTCTCTCCGCCGCCTCCAAATCTCTCCCCACATATTATAAATATATATCTACTCTT
TCCTCAAATCATCAAACTTAAAGGAAGAAAAAAAAAAGGAATTATTATTTCTGATTTTCCTTTCCTCCTCTGTGAAGACTTGAAATTTTTGTTTTTATTTCATCTCTCTG
ATCTCTTGCAAACATGAGTTCCGCTCAGCCTGCAGGTGTTTATCCTCCACCCTCCACCGTGCCGACATCTTATGCAGCTCCACCGCCGGCGGGGTATCCGACGAGAGACG
GCGGAGACTTCTCTCAACCCGCCCCTGTTCCGGCTGAAACCAAGTCTAGAGGCGATGGCTTTTGGAAAGGCTGTTGTGCTGCGTTGTGTTGCTGCTGCGTGTTGGATGCA
TGCTTCTAATCACTAGAAGTTCAACCCAACAAATTCTTAGAGATGATCGATATATATATCAGCATATTTATTGTCATTTTAGTGTTTTAATTTTAATTTTTCCTTTTTTT
TGTGAATTTTTGGATTAATTATGTGATGATGTTGTAATAATAAATTTGGGTGTTGAAAAATCATGCTGATGAAATCATATTGGACTTCTGTGATCATATTACATGCTCTG
TTTTTTTTTTTAAATTAATTATAATTTTTCTTGTGTGGAGTAGTTTAGTTTGATTTGTTTAAATATCCTCATGACACGTGGCGAACCACACGTGTGCATGGAAGAAGATA
ACTGATAAGGATGAAAGAGAGAATTTATTTATTTATTTATTTATTTATTTATTTGTATTTTGCTTGCTTATTCAATTTGGTTACGCATATTATTATATTCCC
Protein sequenceShow/hide protein sequence
MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF