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Lsi04G019560 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G019560
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description60S ribosomal protein L18a-like protein
Genome locationchr04:26653564..26656892
RNA-Seq ExpressionLsi04G019560
SyntenyLsi04G019560
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044804 - AT1G29970-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146004.1 60S ribosomal protein L18a-like protein [Cucumis sativus]5.0e-7892.81Show/hide
Query:  MSKEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG
        MS++DKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPVGF  PTR PGV DSDDPSQYQHYAHGYQAVPGYAIVEGRPVRE RLPCCGIGIGWFLFIIG
Subjt:  MSKEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG

Query:  FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        FFLAAIPWYAGAILI+CGRVDYREKPGYVACSIAAV+ATVAIIFGAT+EADVW
Subjt:  FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

XP_008452440.1 PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]1.2e-7994.12Show/hide
Query:  MSKEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG
        MS+EDKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV FPQPTRPPG+SDSDDPSQYQHYAHGYQAVPGYAIVEGRPVRE  LPCCGIGIGWFLFIIG
Subjt:  MSKEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG

Query:  FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAV+AT+AIIFGAT+EADVW
Subjt:  FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

XP_022936871.1 60S ribosomal protein L18a-like protein [Cucurbita moschata]1.7e-7086.93Show/hide
Query:  MSKEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG
        MS+EDKSAAVGVVVHHHHE N GHPHYGTFQGVANYPPVGFPQPTRPPGVSD DD SQ +HYAHGYQ V GYA+VEGRPVRE RLPCCGIG GWFLFIIG
Subjt:  MSKEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG

Query:  FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        F L A  WY GAILILCGRV YREKPGYVACSIAAV+ATVAIIFGATK ADVW
Subjt:  FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

XP_022976878.1 60S ribosomal protein L18a-like protein [Cucurbita maxima]3.9e-7087.58Show/hide
Query:  MSKEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG
        MS+EDKSAAVGVVVHHHHE N GHPHYGTFQGVANYPPVGFPQPTRPPGVSD DD SQ Q+YAHGYQ V GYAIVEGRPVRE RLPCCGIG GWFLFIIG
Subjt:  MSKEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG

Query:  FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        F L A  WY GAILILCGRV YREKPGYVACSIAAV+ATVAIIFGATK ADVW
Subjt:  FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

XP_038896754.1 60S ribosomal protein L18a-like protein [Benincasa hispida]6.0e-7994.77Show/hide
Query:  MSKEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG
        MS+EDKSAAVGVVVHHHHESNSGHP YGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQ YAHGYQAVPGY IVEGRPVRE+RLPCCGIGIGWFLFIIG
Subjt:  MSKEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG

Query:  FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        FFLAAIPWYAGAILILCGRVDYREKPGYVAC IAAVLATVAIIFGAT+EAD W
Subjt:  FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

TrEMBL top hitse value%identityAlignment
A0A0A0L1Y0 Uncharacterized protein2.4e-7892.81Show/hide
Query:  MSKEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG
        MS++DKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPVGF  PTR PGV DSDDPSQYQHYAHGYQAVPGYAIVEGRPVRE RLPCCGIGIGWFLFIIG
Subjt:  MSKEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG

Query:  FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        FFLAAIPWYAGAILI+CGRVDYREKPGYVACSIAAV+ATVAIIFGAT+EADVW
Subjt:  FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

A0A1S3BUZ1 60S ribosomal protein L18a-like protein5.8e-8094.12Show/hide
Query:  MSKEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG
        MS+EDKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV FPQPTRPPG+SDSDDPSQYQHYAHGYQAVPGYAIVEGRPVRE  LPCCGIGIGWFLFIIG
Subjt:  MSKEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG

Query:  FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAV+AT+AIIFGAT+EADVW
Subjt:  FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

A0A5D3D9U1 60S ribosomal protein L18a-like protein5.8e-8094.12Show/hide
Query:  MSKEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG
        MS+EDKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV FPQPTRPPG+SDSDDPSQYQHYAHGYQAVPGYAIVEGRPVRE  LPCCGIGIGWFLFIIG
Subjt:  MSKEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG

Query:  FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAV+AT+AIIFGAT+EADVW
Subjt:  FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

A0A6J1F8P0 60S ribosomal protein L18a-like protein8.4e-7186.93Show/hide
Query:  MSKEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG
        MS+EDKSAAVGVVVHHHHE N GHPHYGTFQGVANYPPVGFPQPTRPPGVSD DD SQ +HYAHGYQ V GYA+VEGRPVRE RLPCCGIG GWFLFIIG
Subjt:  MSKEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG

Query:  FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        F L A  WY GAILILCGRV YREKPGYVACSIAAV+ATVAIIFGATK ADVW
Subjt:  FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

A0A6J1INF5 60S ribosomal protein L18a-like protein1.9e-7087.58Show/hide
Query:  MSKEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG
        MS+EDKSAAVGVVVHHHHE N GHPHYGTFQGVANYPPVGFPQPTRPPGVSD DD SQ Q+YAHGYQ V GYAIVEGRPVRE RLPCCGIG GWFLFIIG
Subjt:  MSKEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG

Query:  FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        F L A  WY GAILILCGRV YREKPGYVACSIAAV+ATVAIIFGATK ADVW
Subjt:  FFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

SwissProt top hitse value%identityAlignment
Q8L9S1 60S ribosomal protein L18a-like protein6.9e-3047.22Show/hide
Query:  HYGTFQGVANYPPVGFPQPTRPPGVSDSDDP------SQYQ---------HYAHGYQ-AVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIGFFLAAIPWY
        +YGTFQGVAN     FP PT PP       P        YQ         +YA G+   VP Y +VE RP+ E  LPCCG+G+GWFLFI+GF    IPWY
Subjt:  HYGTFQGVANYPPVGFPQPTRPPGVSDSDDP------SQYQ---------HYAHGYQ-AVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIGFFLAAIPWY

Query:  AGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
         GA ++L   VD+REK GYVACSIA+V+  +A++ G T + ++W
Subjt:  AGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

Arabidopsis top hitse value%identityAlignment
AT1G17080.1 Ribosomal protein L18ae family8.4e-4757.5Show/hide
Query:  KEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPP-------VGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGY-AIVEGRPVREQRLPCCGIGIGW
        +EDKS           E  + H  YGTFQGV+NYPP        GFPQP+ PPGV DS  P    +YAHGYQ VP +  + EGRPVR++RLPCCGIG+GW
Subjt:  KEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPP-------VGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGY-AIVEGRPVREQRLPCCGIGIGW

Query:  FLFIIGFFLAAIPWYAGAILILCG-RVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        FLFI+GFFL AIPWY G  +++ G R+DYREKPGY+AC+IAA+LAT+A+I G +K AD W
Subjt:  FLFIIGFFLAAIPWYAGAILILCG-RVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

AT1G29970.1 60S ribosomal protein L18A-14.9e-3147.22Show/hide
Query:  HYGTFQGVANYPPVGFPQPTRPPGVSDSDDP------SQYQ---------HYAHGYQ-AVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIGFFLAAIPWY
        +YGTFQGVAN     FP PT PP       P        YQ         +YA G+   VP Y +VE RP+ E  LPCCG+G+GWFLFI+GF    IPWY
Subjt:  HYGTFQGVANYPPVGFPQPTRPPGVSDSDDP------SQYQ---------HYAHGYQ-AVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIGFFLAAIPWY

Query:  AGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
         GA ++L   VD+REK GYVACSIA+V+  +A++ G T + ++W
Subjt:  AGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

AT1G29970.2 60S ribosomal protein L18A-17.4e-2750.4Show/hide
Query:  HYGTFQGVANYPPVGFPQPTRPPGVSDSDDP------SQYQ---------HYAHGYQ-AVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIGFFLAAIPWY
        +YGTFQGVAN     FP PT PP       P        YQ         +YA G+   VP Y +VE RP+ E  LPCCG+G+GWFLFI+GF    IPWY
Subjt:  HYGTFQGVANYPPVGFPQPTRPPGVSDSDDP------SQYQ---------HYAHGYQ-AVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIGFFLAAIPWY

Query:  AGAILILCGRVDYREKPGYVACSIA
         GA ++L   VD+REK GYVACSIA
Subjt:  AGAILILCGRVDYREKPGYVACSIA

AT1G29970.3 60S ribosomal protein L18A-16.9e-2536.56Show/hide
Query:  HYGTFQGVANYPPVGFPQPTRPPGVSDSDDP------SQYQ---------HYAHGYQ-AVPGYAIVEGRPVREQRLPCCGIGIGWFL-------------
        +YGTFQGVAN     FP PT PP       P        YQ         +YA G+   VP Y +VE RP+ E  LPCCG+G+GWFL             
Subjt:  HYGTFQGVANYPPVGFPQPTRPPGVSDSDDP------SQYQ---------HYAHGYQ-AVPGYAIVEGRPVREQRLPCCGIGIGWFL-------------

Query:  -----------------------------FIIGFFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
                                     FI+GF    IPWY GA ++L   VD+REK GYVACSIA+V+  +A++ G T + ++W
Subjt:  -----------------------------FIIGFFLAAIPWYAGAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

AT1G53560.1 Ribosomal protein L18ae family8.4e-3954.68Show/hide
Query:  YGTFQGVANYPP------------VGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIGFFLAAIPWYAGAIL
        YGTFQGV  YPP            +G PQP+ PPG S   D S +Q Y   +Q V GY + +GRP R+ RLPCCG+G+GWFLFIIGF L AIPWY G  +
Subjt:  YGTFQGVANYPP------------VGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIGFFLAAIPWYAGAIL

Query:  ILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        ++C R+D REKPGYVAC+IAAV+AT+ I+FG      VW
Subjt:  ILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAAGGAAGACAAATCCGCTGCCGTGGGGGTCGTCGTCCACCACCATCACGAATCCAATTCCGGCCACCCTCACTACGGAACCTTCCAAGGCGTCGCTAACTATCC
TCCCGTCGGATTTCCCCAGCCTACTCGCCCGCCTGGTGTCTCCGACTCCGACGATCCTTCTCAATATCAGCACTATGCTCATGGCTATCAAGCTGTCCCCGGATATGCTA
TTGTTGAAGGAAGACCAGTGAGAGAGCAGCGCCTTCCCTGCTGTGGTATTGGCATTGGGTGGTTCCTGTTTATTATTGGTTTCTTCCTTGCTGCTATCCCATGGTATGCT
GGAGCAATTCTTATATTATGTGGCAGGGTAGACTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCTGTTCTTGCCACAGTTGCAATTATTTTCGGTGCCAC
AAAGGAAGCTGATGTCTGGTAA
mRNA sequenceShow/hide mRNA sequence
AAAATATTAATTTTAAATACGATCCCCTCGCGTTCCGAATTCTGATCCATTTCGGCCTACGGTCTCGTTTCTAAAGAGAGAGAGAATGAGCAAGGAAGACAAATCCGCTG
CCGTGGGGGTCGTCGTCCACCACCATCACGAATCCAATTCCGGCCACCCTCACTACGGAACCTTCCAAGGCGTCGCTAACTATCCTCCCGTCGGATTTCCCCAGCCTACT
CGCCCGCCTGGTGTCTCCGACTCCGACGATCCTTCTCAATATCAGCACTATGCTCATGGCTATCAAGCTGTCCCCGGATATGCTATTGTTGAAGGAAGACCAGTGAGAGA
GCAGCGCCTTCCCTGCTGTGGTATTGGCATTGGGTGGTTCCTGTTTATTATTGGTTTCTTCCTTGCTGCTATCCCATGGTATGCTGGAGCAATTCTTATATTATGTGGCA
GGGTAGACTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCTGTTCTTGCCACAGTTGCAATTATTTTCGGTGCCACAAAGGAAGCTGATGTCTGGTAACCA
ATCCTGTAATAAAAATATTGTATAGTTTGCAAATATGTATGAACAACAGAATCCAGTATCTCTGACCACCACATCTTCAAACTAGTTCCATTGAAACCTGAATCTGTGAG
AGCCTATAGATATTGCTTACTGATTGTTTCCTATGCTGTGCTAAGAAGTATACCATTCTGCAAAATCAGGTTATTTGTTTTTCCTATGATATGTCCAAATATTGTGTTAT
TATGACCATTAGTCTGAAACTCCTCTGTCGAAACATACTTATCCTTTAGTAAACATATTTATTCTTTGTTGTTTGGTTTAAGCATTTGAACATCAAAACAGAAAACTGTT
TCACTGATAAGATTGTACCTCTAGCCAGGTTGCTCAGCCC
Protein sequenceShow/hide protein sequence
MSKEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIGFFLAAIPWYA
GAILILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW