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Lsi04G019760 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G019760
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibosomal RNA small subunit methyltransferase G, putative
Genome locationchr04:26790250..26791727
RNA-Seq ExpressionLsi04G019760
SyntenyLsi04G019760
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN55027.1 hypothetical protein Csa_012520 [Cucumis sativus]7.6e-6685.16Show/hide
Query:  MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWKW--TAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVW
        MEALWNLEDKWKLSTQQAF+LLTCT AA++GLCAAAWAKKRKGEKK H +RT   +RWWKW  T  RRK SGGGETPVRLLG E EGEELGSRNSTAAVW
Subjt:  MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWKW--TAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVW

Query:  QRPILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL
        QRPILMGEKCEMLKYSGLILYDERGRLL +QIAAMEN YKEGE I VKTRLKDLL
Subjt:  QRPILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL

XP_008465611.1 PREDICTED: uncharacterized protein LOC103503252 [Cucumis melo]1.9e-6483.87Show/hide
Query:  MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWKWTAERR--KVSGGGETPVRLLGGEGEGEELGSRNSTAAVW
        MEALWNLEDKWKLSTQQAF+LLTCT AA++ LCAAAWA+KRKGEKK HR+RT   +RWWKW AE R     GGGETPVRLLG E EGEELGSRNSTAAVW
Subjt:  MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWKWTAERR--KVSGGGETPVRLLGGEGEGEELGSRNSTAAVW

Query:  QRPILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL
        QRPILMGEKCEMLKYSGLILYDERGRLL DQIAAMEN YKEGE I VKTRLKDLL
Subjt:  QRPILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL

XP_023534959.1 uncharacterized protein LOC111796532 isoform X2 [Cucurbita pepo subsp. pepo]1.3e-6583.66Show/hide
Query:  MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWKWTAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQR
        MEALWNLEDKWKLSTQQAFILLTCTA A++G CAAAWAK+RK EK E RQ   V   WWK  A+ RKVSGGGETPVRLLGGEGEGE+ GSRNSTAAVWQR
Subjt:  MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWKWTAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQR

Query:  PILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL
        PILMGEKCEMLKYSGLILYDERGRLL DQIAAMEN YK+G+ IIVKTRLKDLL
Subjt:  PILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL

XP_038899821.1 uncharacterized protein LOC120087050 isoform X1 [Benincasa hispida]2.1e-6389.13Show/hide
Query:  MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWKWTAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQR
        MEALWNLEDKWKLSTQQAFILLTCTA A+VG+C AAWAKKR+GEKK+HR+ TTV  RWWKW AERRK SGGGETPVRLL GEGEGEELGSRNSTAAVWQR
Subjt:  MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWKWTAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQR

Query:  PILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYK
        PILMGEKCEMLKYSGLILYDERGRLL DQIAAMEN YK
Subjt:  PILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYK

XP_038899822.1 uncharacterized protein LOC120087050 isoform X2 [Benincasa hispida]1.6e-7190.2Show/hide
Query:  MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWKWTAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQR
        MEALWNLEDKWKLSTQQAFILLTCTA A+VG+C AAWAKKR+GEKK+HR+ TTV  RWWKW AERRK SGGGETPVRLL GEGEGEELGSRNSTAAVWQR
Subjt:  MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWKWTAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQR

Query:  PILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL
        PILMGEKCEMLKYSGLILYDERGRLL DQIAAMEN YKEGEAIIVKTRLKDLL
Subjt:  PILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL

TrEMBL top hitse value%identityAlignment
A0A0A0L376 Uncharacterized protein3.7e-6685.16Show/hide
Query:  MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWKW--TAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVW
        MEALWNLEDKWKLSTQQAF+LLTCT AA++GLCAAAWAKKRKGEKK H +RT   +RWWKW  T  RRK SGGGETPVRLLG E EGEELGSRNSTAAVW
Subjt:  MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWKW--TAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVW

Query:  QRPILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL
        QRPILMGEKCEMLKYSGLILYDERGRLL +QIAAMEN YKEGE I VKTRLKDLL
Subjt:  QRPILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL

A0A1S3CQQ9 uncharacterized protein LOC1035032529.0e-6583.87Show/hide
Query:  MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWKWTAERR--KVSGGGETPVRLLGGEGEGEELGSRNSTAAVW
        MEALWNLEDKWKLSTQQAF+LLTCT AA++ LCAAAWA+KRKGEKK HR+RT   +RWWKW AE R     GGGETPVRLLG E EGEELGSRNSTAAVW
Subjt:  MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWKWTAERR--KVSGGGETPVRLLGGEGEGEELGSRNSTAAVW

Query:  QRPILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL
        QRPILMGEKCEMLKYSGLILYDERGRLL DQIAAMEN YKEGE I VKTRLKDLL
Subjt:  QRPILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL

A0A5D3DW00 Uncharacterized protein9.0e-6583.87Show/hide
Query:  MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWKWTAERR--KVSGGGETPVRLLGGEGEGEELGSRNSTAAVW
        MEALWNLEDKWKLSTQQAF+LLTCT AA++ LCAAAWA+KRKGEKK HR+RT   +RWWKW AE R     GGGETPVRLLG E EGEELGSRNSTAAVW
Subjt:  MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWKWTAERR--KVSGGGETPVRLLGGEGEGEELGSRNSTAAVW

Query:  QRPILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL
        QRPILMGEKCEMLKYSGLILYDERGRLL DQIAAMEN YKEGE I VKTRLKDLL
Subjt:  QRPILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL

A0A6J1IGV7 uncharacterized protein LOC111477103 isoform X22.9e-6383.12Show/hide
Query:  MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTER-WWKWTAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQ
        MEALWNLEDKWKLSTQQAFILLTCTA A++G CAA WAK+RK EK E RQ T  TER WWK  A+RRKVSGGGETPVRLLG  GEGE+ GSRNSTAAVWQ
Subjt:  MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTER-WWKWTAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQ

Query:  RPILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL
        RPILMGEKCEMLKYSGLILYDERGRLL DQIAAMEN YK+G+ +IVKTRLKDLL
Subjt:  RPILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL

A0A6J1II18 uncharacterized protein LOC111477103 isoform X12.0e-5684.17Show/hide
Query:  MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTER-WWKWTAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQ
        MEALWNLEDKWKLSTQQAFILLTCTA A++G CAA WAK+RK EK E RQ T  TER WWK  A+RRKVSGGGETPVRLLG  GEGE+ GSRNSTAAVWQ
Subjt:  MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTER-WWKWTAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQ

Query:  RPILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYK
        RPILMGEKCEMLKYSGLILYDERGRLL DQIAAMEN YK
Subjt:  RPILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G49000.1 unknown protein1.6e-0566.67Show/hide
Query:  VWQRPILMGEKCEMLKYSGLILYDERGRLL
        +WQR ILMG KCE L +SG+I YD  GRLL
Subjt:  VWQRPILMGEKCEMLKYSGLILYDERGRLL

AT1G71740.1 unknown protein3.0e-0451.61Show/hide
Query:  VWQRPILMGEKCEMLKYSGLILYDERGRLLP
        +WQ+ ILMG KC++  +SG+ILYD  G+++P
Subjt:  VWQRPILMGEKCEMLKYSGLILYDERGRLLP

AT3G14760.1 unknown protein8.2e-1836.63Show/hide
Query:  MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKE-----------HRQRTTVTERWWKWTAERRKVSGG--GETPVRLLGGEGEGE-
        MEALW LE+K KL+T++A ++L  TAAA+  LC AA    R    K+              RT   +R  KW+  +R + G     +  + +  E   + 
Subjt:  MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKE-----------HRQRTTVTERWWKWTAERRKVSGG--GETPVRLLGGEGEGE-

Query:  -----ELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL
             +  S N+   VWQRPILMGEKCE+ ++SGLILYDE G   P     ++   K+    +V+T L+DLL
Subjt:  -----ELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL

AT3G18560.1 unknown protein6.1e-0541.03Show/hide
Query:  TTVTERWWKWTAERRKVSGGG---ETPVRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLL
        TT++ +       + K   GG   +T V ++  E E EE G       VWQR ILMG KCE L YSG+I YD  G  L
Subjt:  TTVTERWWKWTAERRKVSGGG---ETPVRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACCCAACAAGCTTTCATTCTCTTAACGTGCACGGCGGCCGCCATTGTCGGGCTCTGCGCGGCGGCATG
GGCAAAGAAAAGGAAGGGGGAGAAGAAAGAGCACCGACAACGGACGACGGTGACAGAGAGGTGGTGGAAATGGACGGCGGAAAGGCGGAAGGTGAGCGGCGGCGGAGAGA
CGCCGGTGCGGCTGTTGGGCGGGGAAGGGGAAGGTGAAGAATTGGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATATTAATGGGGGAAAAGTGTGAGATG
CTGAAATACAGTGGACTTATTCTGTACGACGAAAGGGGAAGATTGCTGCCGGATCAAATCGCCGCCATGGAAAATAGTTACAAGGAAGGAGAAGCCATAATAGTAAAGAC
AAGGTTGAAGGATCTACTCTGA
mRNA sequenceShow/hide mRNA sequence
AATAATAATAATATATAGCTCCGACTTGATCAGCATCCTCCCATGTCTTGAAAGCCATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACCCAACAAGCT
TTCATTCTCTTAACGTGCACGGCGGCCGCCATTGTCGGGCTCTGCGCGGCGGCATGGGCAAAGAAAAGGAAGGGGGAGAAGAAAGAGCACCGACAACGGACGACGGTGAC
AGAGAGGTGGTGGAAATGGACGGCGGAAAGGCGGAAGGTGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCGGGGAAGGGGAAGGTGAAGAATTGGGAAGCCGGA
ATTCGACGGCGGCGGTGTGGCAACGGCCGATATTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGACTTATTCTGTACGACGAAAGGGGAAGATTGCTGCCGGAT
CAAATCGCCGCCATGGAAAATAGTTACAAGGAAGGAGAAGCCATAATAGTAAAGACAAGGTTGAAGGATCTACTCTGATGCTGTTCCTCTTCCATGGGAATCTTCAAAAA
AGAGGTGTAAAAATTATACAAAGGGGTGAGCTTTTCCAATGTAATATCCCTTTCTTCTTTTGGTTAGATTCTCCAAATAAGCTTTCTTTCTCTCCATTTGTTACAAATTA
TCC
Protein sequenceShow/hide protein sequence
MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWKWTAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEM
LKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL