; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G020030 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G020030
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUbiquitin domain-containing protein
Genome locationchr04:27155782..27159919
RNA-Seq ExpressionLsi04G020030
SyntenyLsi04G020030
Gene Ontology termsNA
InterPro domainsIPR032752 - DC-UbP/UBTD2, N-terminal domain
IPR038169 - DC-UbP/UBTD2, N-terminal domain superfamily
IPR039869 - Ubiquitin domain-containing protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146021.1 ubiquitin domain-containing protein 1 [Cucumis sativus]2.2e-5494.59Show/hide
Query:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP
        MGCAGSSQAKGDG VKKIRKPKPWK+PQPITKTDLVRMRDEFWDTAPHYGGRKEIWDAL+AAAEADLTLAQAIVDSAG+IVQ+ADLTICYDERGAKYELP
Subjt:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP

Query:  KYVLSEPTNLI
        KYVLSEPTNL+
Subjt:  KYVLSEPTNLI

XP_008463752.1 PREDICTED: ubiquitin domain-containing protein 1-like [Cucumis melo]1.7e-5495.5Show/hide
Query:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP
        MGCAGSSQAKGDG VKKIRKPKPWK+PQPITKTDLVRMRDEFWDTAPHYGGRKEIWDAL+AAAEADLTLAQAIVDSAG+IVQ+ADLTICYDERGAKYELP
Subjt:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP

Query:  KYVLSEPTNLI
        KYVLSEPTNLI
Subjt:  KYVLSEPTNLI

XP_022144511.1 ubiquitin domain-containing protein 1-like [Momordica charantia]1.7e-5495.5Show/hide
Query:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP
        MGCAGSSQAKGDGPVKKIRKPK WKHPQPITKT+LV+MRDEFWDTAPHYGGRKEIWDAL+AAAEADLTLAQAIVDSAGVIVQ+ADLTICYDERGAKYELP
Subjt:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP

Query:  KYVLSEPTNLI
        KYVLSEPTNLI
Subjt:  KYVLSEPTNLI

XP_022941497.1 ubiquitin domain-containing protein 1-like [Cucurbita moschata]6.3e-5494.59Show/hide
Query:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP
        MGCAGSSQAKGDGPVKKIRKPK WKHPQPITKTDL RMRDEFWDTAPHYGG KEIWDAL+AAAEADLTLAQAIVDSAGVIVQ+ADLTICYDERGA+YELP
Subjt:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP

Query:  KYVLSEPTNLI
        KYVLSEPTNLI
Subjt:  KYVLSEPTNLI

XP_038898666.1 ubiquitin domain-containing protein 1-like [Benincasa hispida]2.6e-5596.4Show/hide
Query:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP
        MGCAGSSQAKG+GPVKKIRKPKPWKHPQPI+KTDLVRMRDEFWDTAPHYGGRKEIWDAL+AAAEADLTLAQAIVDSAGVIVQ+ADLTICYDERGAKYELP
Subjt:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP

Query:  KYVLSEPTNLI
        KYVLSEPTNLI
Subjt:  KYVLSEPTNLI

TrEMBL top hitse value%identityAlignment
A0A0A0KZH7 UBD domain-containing protein1.0e-5494.59Show/hide
Query:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP
        MGCAGSSQAKGDG VKKIRKPKPWK+PQPITKTDLVRMRDEFWDTAPHYGGRKEIWDAL+AAAEADLTLAQAIVDSAG+IVQ+ADLTICYDERGAKYELP
Subjt:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP

Query:  KYVLSEPTNLI
        KYVLSEPTNL+
Subjt:  KYVLSEPTNLI

A0A1S3CJZ5 ubiquitin domain-containing protein 1-like8.0e-5595.5Show/hide
Query:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP
        MGCAGSSQAKGDG VKKIRKPKPWK+PQPITKTDLVRMRDEFWDTAPHYGGRKEIWDAL+AAAEADLTLAQAIVDSAG+IVQ+ADLTICYDERGAKYELP
Subjt:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP

Query:  KYVLSEPTNLI
        KYVLSEPTNLI
Subjt:  KYVLSEPTNLI

A0A6J1CTM1 ubiquitin domain-containing protein 1-like8.0e-5595.5Show/hide
Query:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP
        MGCAGSSQAKGDGPVKKIRKPK WKHPQPITKT+LV+MRDEFWDTAPHYGGRKEIWDAL+AAAEADLTLAQAIVDSAGVIVQ+ADLTICYDERGAKYELP
Subjt:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP

Query:  KYVLSEPTNLI
        KYVLSEPTNLI
Subjt:  KYVLSEPTNLI

A0A6J1FML0 ubiquitin domain-containing protein 1-like3.0e-5494.59Show/hide
Query:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP
        MGCAGSSQAKGDGPVKKIRKPK WKHPQPITKTDL RMRDEFWDTAPHYGG KEIWDAL+AAAEADLTLAQAIVDSAGVIVQ+ADLTICYDERGA+YELP
Subjt:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP

Query:  KYVLSEPTNLI
        KYVLSEPTNLI
Subjt:  KYVLSEPTNLI

A0A6J1IYX4 ubiquitin domain-containing protein 1-like3.0e-5494.59Show/hide
Query:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP
        MGCAGSSQAKGDGPVKKIRKPK WKHPQPITKTDL RMRDEFWDTAPHYGG KEIWDAL+AAAEADLTLAQAIVDSAGVIVQ+ADLTICYDERGA+YELP
Subjt:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP

Query:  KYVLSEPTNLI
        KYVLSEPTNLI
Subjt:  KYVLSEPTNLI

SwissProt top hitse value%identityAlignment
Q4V8W7 Ubiquitin domain-containing protein 11.0e-2251.3Show/hide
Query:  GCAGSSQAKGDGPVKKIRKPKP-WKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEA----DLTLAQAIVDSAGVIVQTADLTICYDERGAK
        G    +Q K  G  + ++K KP WK   P+T+  L   RDEFWDTAP + GRKEIWDAL+AAA A    D  LAQAIVD A + +    LT CYDE G +
Subjt:  GCAGSSQAKGDGPVKKIRKPKP-WKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEA----DLTLAQAIVDSAGVIVQTADLTICYDERGAK

Query:  YELPKYVLSEPTNLI
        Y+LP Y L+ P NLI
Subjt:  YELPKYVLSEPTNLI

Q5EAE3 Ubiquitin domain-containing protein 21.9e-2151.35Show/hide
Query:  GSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEA----DLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP
        G+  A G     K  KPK WK   P+T   L   RDEFWDTAP + GRKEIWDAL+AAA A    D  LAQAI+D A + +    LT CYDE G +Y+LP
Subjt:  GSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEA----DLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP

Query:  KYVLSEPTNLI
         Y L+ P N+I
Subjt:  KYVLSEPTNLI

Q6DG43 Ubiquitin domain-containing protein 23.9e-2252.25Show/hide
Query:  GSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEA----DLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP
        G+  A G     K  KPK WK   P+T   L   RDEFWDTAP + GRKEIWDAL+AAA+A    D  LAQAI+D A + +    LT CYDE G +Y+LP
Subjt:  GSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEA----DLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP

Query:  KYVLSEPTNLI
         Y LS P N+I
Subjt:  KYVLSEPTNLI

Q6GL38 Ubiquitin domain-containing protein 13.0e-2251.33Show/hide
Query:  AGSSQAKGDGPVKKIRKPKP-WKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEA----DLTLAQAIVDSAGVIVQTADLTICYDERGAKYE
        A   Q K  G  + ++K +P WK   P+T   L   RDEFWDTAP + GRKEIWDAL+AAA A    D  LAQAIVD A + +    LT CYDE G +Y+
Subjt:  AGSSQAKGDGPVKKIRKPKP-WKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEA----DLTLAQAIVDSAGVIVQTADLTICYDERGAKYE

Query:  LPKYVLSEPTNLI
        LP Y L+ P NLI
Subjt:  LPKYVLSEPTNLI

Q8WUN7 Ubiquitin domain-containing protein 21.9e-2151.35Show/hide
Query:  GSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEA----DLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP
        G+  A G     K  KPK WK   P+T   L   RDEFWDTAP + GRKEIWDAL+AAA A    D  LAQAI+D A + +    LT CYDE G +Y+LP
Subjt:  GSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEA----DLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP

Query:  KYVLSEPTNLI
         Y L+ P N+I
Subjt:  KYVLSEPTNLI

Arabidopsis top hitse value%identityAlignment
AT1G16960.1 Ubiquitin domain-containing protein1.3e-4169.64Show/hide
Query:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEA-DLTLAQAIVDSAGVIVQTADLTICYDERGAKYEL
        MGC+ SS+   +G  +KIR+PK WKHPQPI++ +L +MR+EFWDTAPHYGG+KEIWDAL+AAAE  DL+LAQ I++SAGVIVQ  DLTICYDE+G+KYEL
Subjt:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEA-DLTLAQAIVDSAGVIVQTADLTICYDERGAKYEL

Query:  PKYVLSEPTNLI
        PKYVL +P+NLI
Subjt:  PKYVLSEPTNLI

AT1G53400.1 Ubiquitin domain-containing protein2.8e-5283.64Show/hide
Query:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP
        MGCAGS+Q++ DG VKKIRKPKPWKH QPITK +L+++R+EFWDTAPHYGGRKEIWDAL+AAAEAD++LAQAIVDSAGVIVQ  DLT+CYDERGAKYELP
Subjt:  MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELP

Query:  KYVLSEPTNL
        KYVLSEPTNL
Subjt:  KYVLSEPTNL

AT5G45740.1 Ubiquitin domain-containing protein1.7e-4472.57Show/hide
Query:  MGCAGSSQAKGDGPV--KKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYE
        MGC GSSQA+ +G    KKI KPKPW H +PIT+  L  MR+EFWDT+PHYGG++EIW+AL+AAAEADL LAQ IVDSAGVIVQ  DLT+C+DERGA+YE
Subjt:  MGCAGSSQAKGDGPV--KKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYE

Query:  LPKYVLSEPTNLI
        LP+YVLSEPTNLI
Subjt:  LPKYVLSEPTNLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTGTGCCGGATCGTCGCAGGCCAAAGGCGACGGGCCTGTGAAAAAAATTAGGAAGCCTAAACCTTGGAAGCATCCCCAACCAATAACAAAGACAGATCTTGTGCG
GATGCGTGATGAATTTTGGGATACTGCACCTCATTATGGTGGCAGAAAAGAGATCTGGGATGCACTTCAAGCTGCTGCAGAAGCTGATCTGACGCTAGCACAAGCAATTG
TGGATAGTGCAGGGGTCATTGTACAAACTGCTGATTTAACCATTTGTTATGATGAAAGAGGTGCGAAATACGAATTGCCTAAGTATGTTTTGAGTGAGCCAACCAACTTG
ATTTGA
mRNA sequenceShow/hide mRNA sequence
GAAAACCGCAGGGACTTTAAGCTTCGGCTTTTGACTTTTTGGACTCTCAGCGAAGCTTCTTCGCCCTGTTCACTTTTTCCTTCCAAATCTGCCTTTCCTCTCCCTTCGGT
TCTCACCCTTTTCTTCTTTTCTCTCCTAATTTTGCACTCTTTAATGGGTTGTGCCGGATCGTCGCAGGCCAAAGGCGACGGGCCTGTGAAAAAAATTAGGAAGCCTAAAC
CTTGGAAGCATCCCCAACCAATAACAAAGACAGATCTTGTGCGGATGCGTGATGAATTTTGGGATACTGCACCTCATTATGGTGGCAGAAAAGAGATCTGGGATGCACTT
CAAGCTGCTGCAGAAGCTGATCTGACGCTAGCACAAGCAATTGTGGATAGTGCAGGGGTCATTGTACAAACTGCTGATTTAACCATTTGTTATGATGAAAGAGGTGCGAA
ATACGAATTGCCTAAGTATGTTTTGAGTGAGCCAACCAACTTGATTTGAAGTAATATGAGAGAGAGAGAGATGAGGAGCTGTATCTTTTGTGATGAAGATTGATTGTAAA
TCATGTATATTACAATATTACTTCCTTTCTAATGTTTCTTTTCAGTCTGTACTTTGAAAGATTTCCCATATTGATCAATTGGGACTTGCGCTGTAAGTTCATTTTGATCC
AATGAAAGGAATGAAATGTCTATTTGGAGTTGTCACGGTGGTGTTGTTTACCTAGGACGACAAACATCTATTATCCTAAACATTTATGTCTTAGCTTATTAATTCTTAGA
TATTTAACATTATTACATCATATAATATTTGCAATCTAAATGGACTATTGAAAATTCTTATTAGCTTGTTTTTGCATATATGTTTTTGTTTATGCATGTATTCTAATGAG
TTAATTTTAA
Protein sequenceShow/hide protein sequence
MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAEADLTLAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTNL
I