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Lsi04G020990 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G020990
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA ligase
Genome locationchr04:28164184..28164537
RNA-Seq ExpressionLsi04G020990
SyntenyLsi04G020990
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7031776.1 hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyrosperma]3.8e-4987.72Show/hide
Query:  MLNQYNPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCRNLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEF
        MLN Y+PFSFT KLKSSI CFR DHGD  E E DSSPRTPRSPLKSMA+E PELRGMCRNLVARI RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDEF
Subjt:  MLNQYNPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCRNLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEF

Query:  PIRDFTSRLPASPP
        PIRDF SRLPASPP
Subjt:  PIRDFTSRLPASPP

XP_022138148.1 uncharacterized protein LOC111009386 [Momordica charantia]9.0e-4380.17Show/hide
Query:  MMLNQYN--PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCRNLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDD
        M+ N+YN  PFSFTHKLKSSI CFR DHGDL + ED++S R+PRSPLKS ASE  ELRGMCRNLVARI RSRRRYHHSADFRYDPSSYALNFEDE  R D
Subjt:  MMLNQYN--PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCRNLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDD

Query:  DEFPIRDFTSRLPASP
        D+FPIRDF SRLPASP
Subjt:  DEFPIRDFTSRLPASP

XP_022940408.1 uncharacterized protein LOC111446022 [Cucurbita moschata]9.9e-5087.83Show/hide
Query:  MMLNQYNPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCRNLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE
        MMLN Y+PFSFT KLKSSI CFR DHGD  E E DSSPRTPRSPLKSMA+E PELRGMCRNLVARI RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDE
Subjt:  MMLNQYNPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCRNLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE

Query:  FPIRDFTSRLPASPP
        FPIRDF SRLPASPP
Subjt:  FPIRDFTSRLPASPP

XP_022981208.1 uncharacterized protein LOC111480417 [Cucurbita maxima]2.6e-5086.96Show/hide
Query:  MMLNQYNPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCRNLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE
        MMLN+Y+PFSFT KLKSSIRCFR DH D  E+EDDSSPRTPRSPLKSMA+E PE+RGMCRNLVARI R RRRYHHSADFRYDPSSYALNFEDEQ+RDDDE
Subjt:  MMLNQYNPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCRNLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE

Query:  FPIRDFTSRLPASPP
        FPIRDF SRLPASPP
Subjt:  FPIRDFTSRLPASPP

XP_023523424.1 uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo]5.8e-5088.6Show/hide
Query:  MLNQYNPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCRNLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEF
        MLN Y+PFSFT KLKSSI CFR DHGD  E EDDSSPRTPRSPLKSMA+E PELRGMCRNLVARI RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDEF
Subjt:  MLNQYNPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCRNLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEF

Query:  PIRDFTSRLPASPP
        PIRDF SRLPASPP
Subjt:  PIRDFTSRLPASPP

TrEMBL top hitse value%identityAlignment
A0A1S3BVQ9 uncharacterized protein LOC1034937781.3e-3978.63Show/hide
Query:  MLNQYNPFSFTHKLKSSI-RCFRPDH-GDLDETEDDSSPRTPRSPLKSMASELPELRGMCRNLVARIS-RSRRRYHHSADFRYDPSSYALNFEDEQIRDD
        M N YNPFSFTHKLKSSI  CFRPDH  +L E EDD+        LKSM S+LPELRGMCR+LVARIS  SRRRYHHSADFRYDPSSYALNFEDEQ+RDD
Subjt:  MLNQYNPFSFTHKLKSSI-RCFRPDH-GDLDETEDDSSPRTPRSPLKSMASELPELRGMCRNLVARIS-RSRRRYHHSADFRYDPSSYALNFEDEQIRDD

Query:  DEFPIRDFTSRLPASPP
        +EFPIRDFTSRLPASPP
Subjt:  DEFPIRDFTSRLPASPP

A0A5A7VBS3 DNA ligase1.3e-3978.63Show/hide
Query:  MLNQYNPFSFTHKLKSSI-RCFRPDH-GDLDETEDDSSPRTPRSPLKSMASELPELRGMCRNLVARIS-RSRRRYHHSADFRYDPSSYALNFEDEQIRDD
        M N YNPFSFTHKLKSSI  CFRPDH  +L E EDD+        LKSM S+LPELRGMCR+LVARIS  SRRRYHHSADFRYDPSSYALNFEDEQ+RDD
Subjt:  MLNQYNPFSFTHKLKSSI-RCFRPDH-GDLDETEDDSSPRTPRSPLKSMASELPELRGMCRNLVARIS-RSRRRYHHSADFRYDPSSYALNFEDEQIRDD

Query:  DEFPIRDFTSRLPASPP
        +EFPIRDFTSRLPASPP
Subjt:  DEFPIRDFTSRLPASPP

A0A6J1CC83 uncharacterized protein LOC1110093864.3e-4380.17Show/hide
Query:  MMLNQYN--PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCRNLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDD
        M+ N+YN  PFSFTHKLKSSI CFR DHGDL + ED++S R+PRSPLKS ASE  ELRGMCRNLVARI RSRRRYHHSADFRYDPSSYALNFEDE  R D
Subjt:  MMLNQYN--PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCRNLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDD

Query:  DEFPIRDFTSRLPASP
        D+FPIRDF SRLPASP
Subjt:  DEFPIRDFTSRLPASP

A0A6J1FP70 uncharacterized protein LOC1114460224.8e-5087.83Show/hide
Query:  MMLNQYNPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCRNLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE
        MMLN Y+PFSFT KLKSSI CFR DHGD  E E DSSPRTPRSPLKSMA+E PELRGMCRNLVARI RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDE
Subjt:  MMLNQYNPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCRNLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE

Query:  FPIRDFTSRLPASPP
        FPIRDF SRLPASPP
Subjt:  FPIRDFTSRLPASPP

A0A6J1J1H3 uncharacterized protein LOC1114804171.3e-5086.96Show/hide
Query:  MMLNQYNPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCRNLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE
        MMLN+Y+PFSFT KLKSSIRCFR DH D  E+EDDSSPRTPRSPLKSMA+E PE+RGMCRNLVARI R RRRYHHSADFRYDPSSYALNFEDEQ+RDDDE
Subjt:  MMLNQYNPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCRNLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE

Query:  FPIRDFTSRLPASPP
        FPIRDF SRLPASPP
Subjt:  FPIRDFTSRLPASPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G11070.1 unknown protein3.3e-1148.45Show/hide
Query:  RTPRSP---LKSMASELPELRGMCRNLVARISRSRR-----------RYHHS----ADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPPLK
        RTPRSP   LKS A EL ELR  CR + +RI  + R            +HHS     DF YDP SYALNFED  +R DD+    +FT+RLP SP  K
Subjt:  RTPRSP---LKSMASELPELRGMCRNLVARISRSRR-----------RYHHS----ADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPPLK

AT5G35090.1 unknown protein7.6e-0839.77Show/hide
Query:  SPRTPRSPLKSMASELPELRGMCRNLVARI--------SRSRRRYHHSADFRYDPSSYALNFEDEQIRDD-DEFPIRDFTSRLPASPP
        SPR  R+  KS           C++L+ R+           +    H+ADF YDPSSYALNF+     D+ D FP+R+F++RLP SPP
Subjt:  SPRTPRSPLKSMASELPELRGMCRNLVARI--------SRSRRRYHHSADFRYDPSSYALNFEDEQIRDD-DEFPIRDFTSRLPASPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCTGAACCAGTACAATCCATTTTCATTCACTCACAAGCTCAAATCCTCAATCCGTTGTTTCCGCCCCGATCATGGCGATTTGGACGAAACCGAAGACGATTCTTC
TCCAAGAACTCCTAGATCGCCTCTCAAATCAATGGCGTCAGAGCTCCCGGAGCTCCGGGGAATGTGCCGGAATCTCGTCGCTCGAATCAGCAGGAGTCGCCGACGGTACC
ATCACTCCGCCGATTTCCGATACGATCCTTCGAGTTATGCCCTTAATTTCGAGGACGAACAGATTCGCGATGATGATGAGTTTCCTATTAGGGATTTCACTTCGAGATTG
CCGGCGTCGCCGCCACTGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGCTGAACCAGTACAATCCATTTTCATTCACTCACAAGCTCAAATCCTCAATCCGTTGTTTCCGCCCCGATCATGGCGATTTGGACGAAACCGAAGACGATTCTTC
TCCAAGAACTCCTAGATCGCCTCTCAAATCAATGGCGTCAGAGCTCCCGGAGCTCCGGGGAATGTGCCGGAATCTCGTCGCTCGAATCAGCAGGAGTCGCCGACGGTACC
ATCACTCCGCCGATTTCCGATACGATCCTTCGAGTTATGCCCTTAATTTCGAGGACGAACAGATTCGCGATGATGATGAGTTTCCTATTAGGGATTTCACTTCGAGATTG
CCGGCGTCGCCGCCACTGAAATGA
Protein sequenceShow/hide protein sequence
MMLNQYNPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPRTPRSPLKSMASELPELRGMCRNLVARISRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRL
PASPPLK