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Lsi04G021070 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G021070
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein TPR1-like isoform X1
Genome locationchr04:28223244..28225775
RNA-Seq ExpressionLsi04G021070
SyntenyLsi04G021070
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0048731 - system development (biological process)
InterPro domainsIPR006595 - CTLH, C-terminal LisH motif
IPR027728 - Topless family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064616.1 protein TPR1-like isoform X1 [Cucumis melo var. makuwa]5.1e-4760.33Show/hide
Query:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE----------------------------------------
        LECETGLFFNM YFEE+LNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEAL++                                        
Subjt:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE----------------------------------------

Query:  -----------------SHKLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRD
                         SH LLSSYKNMK ARKVV+ENIKKCIEANPLLQGKLSFPPL TTLQA Y  AM +RGR PA  CRRD
Subjt:  -----------------SHKLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRD

KAE8649955.1 hypothetical protein Csa_012980 [Cucumis sativus]1.1e-4966.67Show/hide
Query:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE--------------------------------------SH
        LECETGLFFNM YFEE+LNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEAL++                                      SH
Subjt:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE--------------------------------------SH

Query:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRD
         LLSSY+NMK ARKVV+ENIKKCIEANPLL+GKLSFPPL TTLQA YT AM +R RPPA  CRRD
Subjt:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRD

XP_008452905.1 PREDICTED: protein TPR1-like isoform X1 [Cucumis melo]3.2e-4967.27Show/hide
Query:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE--------------------------------------SH
        LECETGLFFNM YFEE+LNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEAL++                                      SH
Subjt:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE--------------------------------------SH

Query:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRD
         LLSSYKNMK ARKVV+ENIKKCIEANPLLQGKLSFPPL TTLQA Y  AM +RGR PA  CRRD
Subjt:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRD

XP_008452906.1 PREDICTED: protein TPR1-like isoform X2 [Cucumis melo]5.8e-5174Show/hide
Query:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE-----------------------SHKLLSSYKNMKAARKV
        LECETGLFFNM YFEE+LNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEAL++                       SH LLSSYKNMK ARKV
Subjt:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE-----------------------SHKLLSSYKNMKAARKV

Query:  VIENIKKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRD
        V+ENIKKCIEANPLLQGKLSFPPL TTLQA Y  AM +RGR PA  CRRD
Subjt:  VIENIKKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRD

XP_038896847.1 protein TPR1-like [Benincasa hispida]2.6e-5172.19Show/hide
Query:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE-----------------------SHKLLSSYKNMKAARKV
        LECETGLFFNM YFEEMLNCCAY+EAE+YLCGFTDIHDNIYS KIYF IRKLKFLEAL++                       SH LLSSYKN+K ARKV
Subjt:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE-----------------------SHKLLSSYKNMKAARKV

Query:  VIENIKKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRDS
        V+ENIKKCI+ANPLLQGKLSFPPLPTTLQAVYT AM +R   PA ACRRDS
Subjt:  VIENIKKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRDS

TrEMBL top hitse value%identityAlignment
A0A0A0L5R0 Uncharacterized protein9.7e-5273.33Show/hide
Query:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE-----------------------SHKLLSSYKNMKAARKV
        LECETGLFFNM YFEE+LNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEAL++                       SH LLSSY+NMK ARKV
Subjt:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE-----------------------SHKLLSSYKNMKAARKV

Query:  VIENIKKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRD
        V+ENIKKCIEANPLL+GKLSFPPL TTLQA YT AM +R RPPA  CRRD
Subjt:  VIENIKKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRD

A0A1S3BUX9 protein TPR1-like isoform X11.5e-4967.27Show/hide
Query:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE--------------------------------------SH
        LECETGLFFNM YFEE+LNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEAL++                                      SH
Subjt:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE--------------------------------------SH

Query:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRD
         LLSSYKNMK ARKVV+ENIKKCIEANPLLQGKLSFPPL TTLQA Y  AM +RGR PA  CRRD
Subjt:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRD

A0A1S3BVS3 protein TPR1-like isoform X22.8e-5174Show/hide
Query:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE-----------------------SHKLLSSYKNMKAARKV
        LECETGLFFNM YFEE+LNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEAL++                       SH LLSSYKNMK ARKV
Subjt:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE-----------------------SHKLLSSYKNMKAARKV

Query:  VIENIKKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRD
        V+ENIKKCIEANPLLQGKLSFPPL TTLQA Y  AM +RGR PA  CRRD
Subjt:  VIENIKKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRD

A0A5D3D8T8 Protein TPR1-like isoform X12.8e-5174Show/hide
Query:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE-----------------------SHKLLSSYKNMKAARKV
        LECETGLFFNM YFEE+LNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEAL++                       SH LLSSYKNMK ARKV
Subjt:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE-----------------------SHKLLSSYKNMKAARKV

Query:  VIENIKKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRD
        V+ENIKKCIEANPLLQGKLSFPPL TTLQA Y  AM +RGR PA  CRRD
Subjt:  VIENIKKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRD

E5GCC7 Uncharacterized protein2.8e-5174Show/hide
Query:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE-----------------------SHKLLSSYKNMKAARKV
        LECETGLFFNM YFEE+LNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEAL++                       SH LLSSYKNMK ARKV
Subjt:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE-----------------------SHKLLSSYKNMKAARKV

Query:  VIENIKKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRD
        V+ENIKKCIEANPLLQGKLSFPPL TTLQA Y  AM +RGR PA  CRRD
Subjt:  VIENIKKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRD

SwissProt top hitse value%identityAlignment
Q0J7U6 Protein TOPLESS-RELATED PROTEIN 21.4e-1535.51Show/hide
Query:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALS--------------------------------------ESH
        LE E+  +FNM +FE+++    ++E E YL GFT + DN YS KI+F IRK K+LEAL                                         +
Subjt:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALS--------------------------------------ESH

Query:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPP
        + LS Y + K+AR +++  +KK IEANPL + KL+FPP
Subjt:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPP

Q0WV90 Topless-related protein 12.8e-1637.32Show/hide
Query:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALS--------------------------------------ESH
        LE E+G FFNM YFE+ ++   ++E E YL GFT + DN YS KI+F IRK K+LEAL                                         +
Subjt:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALS--------------------------------------ESH

Query:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPLPTT
        + LS Y + K+AR +++  +KK IEANPL + KL FP L T+
Subjt:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPLPTT

Q27GK7 Topless-related protein 44.8e-1636.69Show/hide
Query:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE--------------------------------------SH
        LE E+G FFNM YFE+ +    +++ E YL GFT + DN YS KI+F IRK K+LEAL +                                       +
Subjt:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE--------------------------------------SH

Query:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPL
        + LS Y + K+AR +++  +KK IEANPL + KL FP L
Subjt:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPL

Q5NBT9 Protein TPR11.7e-1638.13Show/hide
Query:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALS--------------------------------------ESH
        LE E+G FFNM YFEE ++   ++E E YL GFT + DN YS KI+F IRK K+LEAL                                         +
Subjt:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALS--------------------------------------ESH

Query:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPL
        + LS Y + K+AR +++  +KK IEANPL + KL FP L
Subjt:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPL

Q94AI7 Protein TOPLESS4.8e-1637.41Show/hide
Query:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE--------------------------------------SH
        LE E+G FFNM YFE+ ++   ++E E YL GFT + DN YS KI+F IRK K+LEAL +                                       +
Subjt:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE--------------------------------------SH

Query:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPL
        + LS Y + K+AR +++  +KK IEANPL + KL FP L
Subjt:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPL

Arabidopsis top hitse value%identityAlignment
AT1G15750.1 Transducin family protein / WD-40 repeat family protein3.4e-1737.41Show/hide
Query:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE--------------------------------------SH
        LE E+G FFNM YFE+ ++   ++E E YL GFT + DN YS KI+F IRK K+LEAL +                                       +
Subjt:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE--------------------------------------SH

Query:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPL
        + LS Y + K+AR +++  +KK IEANPL + KL FP L
Subjt:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPL

AT1G15750.2 Transducin family protein / WD-40 repeat family protein3.4e-1737.41Show/hide
Query:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE--------------------------------------SH
        LE E+G FFNM YFE+ ++   ++E E YL GFT + DN YS KI+F IRK K+LEAL +                                       +
Subjt:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE--------------------------------------SH

Query:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPL
        + LS Y + K+AR +++  +KK IEANPL + KL FP L
Subjt:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPL

AT1G15750.3 Transducin family protein / WD-40 repeat family protein3.4e-1737.41Show/hide
Query:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE--------------------------------------SH
        LE E+G FFNM YFE+ ++   ++E E YL GFT + DN YS KI+F IRK K+LEAL +                                       +
Subjt:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE--------------------------------------SH

Query:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPL
        + LS Y + K+AR +++  +KK IEANPL + KL FP L
Subjt:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPL

AT1G80490.1 TOPLESS-related 12.0e-1737.32Show/hide
Query:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALS--------------------------------------ESH
        LE E+G FFNM YFE+ ++   ++E E YL GFT + DN YS KI+F IRK K+LEAL                                         +
Subjt:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALS--------------------------------------ESH

Query:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPLPTT
        + LS Y + K+AR +++  +KK IEANPL + KL FP L T+
Subjt:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPLPTT

AT1G80490.2 TOPLESS-related 12.0e-1737.32Show/hide
Query:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALS--------------------------------------ESH
        LE E+G FFNM YFE+ ++   ++E E YL GFT + DN YS KI+F IRK K+LEAL                                         +
Subjt:  LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALS--------------------------------------ESH

Query:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPLPTT
        + LS Y + K+AR +++  +KK IEANPL + KL FP L T+
Subjt:  KLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPLPTT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTGGAATGCGAAACGGGATTGTTCTTCAACATGGGTTATTTTGAAGAGATGTTGAATTGTTGTGCTTATAATGAAGCTGAAAGCTACCTTTGTGGATTTACTGATATTCA
TGATAATATTTATTCCACCAAGATTTACTTTGGGATTAGAAAGCTCAAATTCCTTGAAGCACTCTCAGAGTCTCACAAATTACTTTCGAGTTACAAAAATATGAAAGCGG
CAAGAAAAGTTGTGATAGAAAATATCAAGAAATGCATTGAAGCCAATCCCCTTCTCCAAGGGAAGCTTTCATTTCCGCCACTCCCAACAACGTTGCAGGCCGTCTACACG
GCGGCAATGACCACTAGGGGCAGGCCACCGGCAAGGGCTTGCAGGCGAGATTCCGGCATTTGA
mRNA sequenceShow/hide mRNA sequence
CTGGAATGCGAAACGGGATTGTTCTTCAACATGGGTTATTTTGAAGAGATGTTGAATTGTTGTGCTTATAATGAAGCTGAAAGCTACCTTTGTGGATTTACTGATATTCA
TGATAATATTTATTCCACCAAGATTTACTTTGGGATTAGAAAGCTCAAATTCCTTGAAGCACTCTCAGAGTCTCACAAATTACTTTCGAGTTACAAAAATATGAAAGCGG
CAAGAAAAGTTGTGATAGAAAATATCAAGAAATGCATTGAAGCCAATCCCCTTCTCCAAGGGAAGCTTTCATTTCCGCCACTCCCAACAACGTTGCAGGCCGTCTACACG
GCGGCAATGACCACTAGGGGCAGGCCACCGGCAAGGGCTTGCAGGCGAGATTCCGGCATTTGA
Protein sequenceShow/hide protein sequence
LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSESHKLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPLPTTLQAVYT
AAMTTRGRPPARACRRDSGI