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Lsi04G021090 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G021090
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTPD1 protein homolog 1-like
Genome locationchr04:28238686..28243229
RNA-Seq ExpressionLsi04G021090
SyntenyLsi04G021090
Gene Ontology termsGO:0001709 - cell fate determination (biological process)
InterPro domainsIPR040361 - Tapetum determinant 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN60075.1 hypothetical protein Csa_001952 [Cucumis sativus]3.3e-4079.59Show/hide
Query:  NCQCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFKPLYSQ
        NC+C++++I ISQSTTG EVNGK+EW+ATI N CVCSQYSVKFDCNGFNTVEKVDESILMV+GS CLVNNGQPIF+S+PISFTYAWD  F F PL+SQ
Subjt:  NCQCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFKPLYSQ

XP_022141896.1 uncharacterized protein At1g05835-like [Momordica charantia]2.2e-2860.2Show/hide
Query:  NCQCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFKPLYSQ
        NCQC+L +I I Q  T   V G++EW  T++NNCVCSQY+VK DC GF++ E VD S L  +G+ECL+N G+PIF S+PISFTYAWD +F FKPL SQ
Subjt:  NCQCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFKPLYSQ

XP_031742370.1 uncharacterized protein At1g05835-like [Cucumis sativus]3.2e-2762.24Show/hide
Query:  NCQCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFKPLYSQ
        NCQC L+ I ISQS TG +++G  EWK TITNNC+CSQ  +K DC GF T   +D SIL +S SECLVNNGQPIF+S PI+F YA    F FKPL SQ
Subjt:  NCQCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFKPLYSQ

XP_038896903.1 TPD1 protein homolog 1-like [Benincasa hispida]2.3e-4183.33Show/hide
Query:  QCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFKPLYSQ
        QC++++I ISQSTTG EVNGK+EW+ATITNNCVCSQYSVKFDCNGFN+VEKVDESILMV+GSECLVNNGQP+F SNPISFTYAWD  F+FKPL+SQ
Subjt:  QCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFKPLYSQ

XP_041021216.1 TPD1 protein homolog 1-like [Juglans microcarpa x Juglans regia]4.2e-2754.21Show/hide
Query:  QNIYYHERRNCQCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFA
        Q I  H   +CQC+L +I I Q+ TG  ++ K EWK TI N C C+   +K DC+GF TVE +D S+L +S  ECLVNNGQPI+ S   SFTYAWDT F 
Subjt:  QNIYYHERRNCQCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFA

Query:  FKPLYSQ
        FKP+YS+
Subjt:  FKPLYSQ

TrEMBL top hitse value%identityAlignment
A0A0A0KLZ6 Uncharacterized protein1.6e-2762.24Show/hide
Query:  NCQCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFKPLYSQ
        NCQC L+ I ISQS TG +++G  EWK TITNNC+CSQ  +K DC GF T   +D SIL +S SECLVNNGQPIF+S PI+F YA    F FKPL SQ
Subjt:  NCQCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFKPLYSQ

A0A0A0LDN0 Uncharacterized protein1.6e-4079.59Show/hide
Query:  NCQCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFKPLYSQ
        NC+C++++I ISQSTTG EVNGK+EW+ATI N CVCSQYSVKFDCNGFNTVEKVDESILMV+GS CLVNNGQPIF+S+PISFTYAWD  F F PL+SQ
Subjt:  NCQCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFKPLYSQ

A0A0A0LEA1 Uncharacterized protein1.2e-3270.41Show/hide
Query:  NCQCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFKPLYSQ
        NC+C L++I ISQ+TTG+ V GK+ WKATITNNC+C Q S+K DCNGFNTV+ VD SIL VSGS CLVN GQPIF S PISFTYA D  F FKPL SQ
Subjt:  NCQCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFKPLYSQ

A0A6J1CKK7 uncharacterized protein At1g05835-like1.1e-2860.2Show/hide
Query:  NCQCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFKPLYSQ
        NCQC+L +I I Q  T   V G++EW  T++NNCVCSQY+VK DC GF++ E VD S L  +G+ECL+N G+PIF S+PISFTYAWD +F FKPL SQ
Subjt:  NCQCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFKPLYSQ

A0A7N2M2J3 Uncharacterized protein1.7e-2658Show/hide
Query:  NCQCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFKPLYSQHN
        NCQCTL ++ I QS TG  V  K  W  TI N C+CSQ  +K  CNGF TV+ VD S+L  SG+ECLVNNG P+  S+ +SFTYAWDT F+F+PL SQ N
Subjt:  NCQCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFKPLYSQHN

SwissProt top hitse value%identityAlignment
Q1G3T1 TPD1 protein homolog 11.4e-0430.59Show/hide
Query:  CTLDEIGISQSTTGNEVNGKKEWKATITNNCV--CSQYSVKFDCNGFNTVEKVDESIL-MVSGSECLVNNGQPIFHSNPISFTYA
        C+ D+I + Q +T    +G   +   I N+CV  C+   +   C  F++V  V+  +   +   +CLVN+GQP+     +SF YA
Subjt:  CTLDEIGISQSTTGNEVNGKKEWKATITNNCV--CSQYSVKFDCNGFNTVEKVDESIL-MVSGSECLVNNGQPIFHSNPISFTYA

Arabidopsis top hitse value%identityAlignment
AT1G32583.1 FUNCTIONS IN: molecular_function unknown9.8e-0630.59Show/hide
Query:  CTLDEIGISQSTTGNEVNGKKEWKATITNNCV--CSQYSVKFDCNGFNTVEKVDESIL-MVSGSECLVNNGQPIFHSNPISFTYA
        C+ D+I + Q +T    +G   +   I N+CV  C+   +   C  F++V  V+  +   +   +CLVN+GQP+     +SF YA
Subjt:  CTLDEIGISQSTTGNEVNGKKEWKATITNNCV--CSQYSVKFDCNGFNTVEKVDESIL-MVSGSECLVNNGQPIFHSNPISFTYA

AT4G32090.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein5.4e-1235.05Show/hide
Query:  CQCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFKPLYSQ
        C CT  +I I    TG E+ G+ EWK T+ N C C Q  V   C GF   + V   +L   G+ CL+  G  +       FTYA    + F+P+ S+
Subjt:  CQCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFKPLYSQ

AT4G32100.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein7.0e-1237.08Show/hide
Query:  TLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFK
        +L+ + + QS TGN V  K EW+  + N+  C        C  F +V  +D  +L  SG  CL+ NG  I   + ISF Y WDT F  K
Subjt:  TLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFK

AT4G32105.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein1.4e-1240.66Show/hide
Query:  CTLDEIGISQSTTGNEVNGKKEWKATITNNC-VCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFK
        C L+ + + QS TG  V  K EW+  +TN C  C     K  C GF +V  V  S+L  SG  CL+N G  IF      F Y WDT F  K
Subjt:  CTLDEIGISQSTTGNEVNGKKEWKATITNNC-VCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFK

AT4G32110.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein1.2e-1441.76Show/hide
Query:  CTLDEIGISQSTTGNEVNGKKEWKATITNNC-VCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFK
        C+L+ + + QS TG  V  K EW+  +TN C  C   + +  C GFN+V  +D S+L+ SG  CLVN G+ I     I F Y WDT F  K
Subjt:  CTLDEIGISQSTTGNEVNGKKEWKATITNNC-VCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLFAFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAACCGTAAAATTGAATATTTTTAACGTTCAAAATATATATTATCACGAAAGACGCAATTGCCAATGCACCTTGGATGAGATTGGAATAAGCCAAAGTACAACTGG
AAATGAAGTGAATGGGAAGAAAGAATGGAAAGCCACAATTACAAACAATTGTGTTTGTTCACAATATAGTGTGAAATTTGATTGCAATGGATTTAACACAGTTGAGAAGG
TTGATGAATCAATCTTAATGGTTTCAGGGTCAGAGTGTTTAGTCAACAATGGTCAACCAATCTTTCATTCAAATCCAATTTCATTCACTTATGCTTGGGATACCTTATTT
GCTTTCAAGCCCCTCTACTCTCAACACAACAACGGCAAAGATGTAGGAATATATAATAGATTGAGATGGTATTGTAAGAAATATGATCAATGGAATTTGGTGGTGTGTTC
CTTTCATCAGGCTAAATCTAAAATTTTAGAAAGTTCTTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAACCGTAAAATTGAATATTTTTAACGTTCAAAATATATATTATCACGAAAGACGCAATTGCCAATGCACCTTGGATGAGATTGGAATAAGCCAAAGTACAACTGG
AAATGAAGTGAATGGGAAGAAAGAATGGAAAGCCACAATTACAAACAATTGTGTTTGTTCACAATATAGTGTGAAATTTGATTGCAATGGATTTAACACAGTTGAGAAGG
TTGATGAATCAATCTTAATGGTTTCAGGGTCAGAGTGTTTAGTCAACAATGGTCAACCAATCTTTCATTCAAATCCAATTTCATTCACTTATGCTTGGGATACCTTATTT
GCTTTCAAGCCCCTCTACTCTCAACACAACAACGGCAAAGATGTAGGAATATATAATAGATTGAGATGGTATTGTAAGAAATATGATCAATGGAATTTGGTGGTGTGTTC
CTTTCATCAGGCTAAATCTAAAATTTTAGAAAGTTCTTTATAA
Protein sequenceShow/hide protein sequence
MKTVKLNIFNVQNIYYHERRNCQCTLDEIGISQSTTGNEVNGKKEWKATITNNCVCSQYSVKFDCNGFNTVEKVDESILMVSGSECLVNNGQPIFHSNPISFTYAWDTLF
AFKPLYSQHNNGKDVGIYNRLRWYCKKYDQWNLVVCSFHQAKSKILESSL