CuGenDBv2

Gene ID	Lsi04G021500
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	chr04:28600540..28604087
RNA-Seq Expression	Lsi04G021500
Synteny	Lsi04G021500
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004136341.2 uncharacterized protein LOC101205248 isoform X1 [Cucumis sativus]

5.5e-114

98.53

Show/hide

Query:  MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLITNRKFTSSVNKP+IVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALR+NDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_008466381.1 PREDICTED: uncharacterized protein LOC103503805 [Cucumis melo]

2.7e-113

98.04

Show/hide

Query:  MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLITNRKFTSSVNKPV VSMNSRFR SAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALR+NDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022132533.1 uncharacterized protein LOC111005365 isoform X1 [Momordica charantia]

1.7e-107

93.14

Show/hide

Query:  MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLIT RKF  +V+KP IVSMNSRFRASAEVPDFLPADW++AHKK+P+GP LHFTAEEAIQHQLDALR+ND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022981205.1 uncharacterized protein LOC111480415 isoform X1 [Cucurbita maxima]

8.5e-107

93.14

Show/hide

Query:  MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLI+ RKFT SVNK VIVSMNSRFRASAEVPDFLPADWH AHKK+P+GP LHFTAEEAIQ QLDALR+NDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        F+PL+RSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_038898556.1 uncharacterized protein LOC120086152 [Benincasa hispida]

1.3e-128

93.93

Show/hide

Query:  KSTIHLQNANQSSTIDFIREEVAESEEEEEREGKGKILLRWKRMSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHK
        KST+HLQNAN SSTIDFIREE AE EEEE    + +IL RWKRMSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSM SRFRASAEVPDFLPADWHDAHK
Subjt:  KSTIHLQNANQSSTIDFIREEVAESEEEEEREGKGKILLRWKRMSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHK

Query:  KDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRV
        KDPIGPRLHFTAEEAIQHQLDALR+NDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEEN FKQRV
Subjt:  KDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRV

Query:  WIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
        WIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
Subjt:  WIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LED5 Uncharacterized protein

2.7e-114

98.53

Show/hide

Query:  MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLITNRKFTSSVNKP+IVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALR+NDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A1S3CR52 uncharacterized protein LOC103503805

1.3e-113

98.04

Show/hide

Query:  MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLITNRKFTSSVNKPV VSMNSRFR SAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALR+NDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A5D3E6H6 Uncharacterized protein

1.3e-113

98.04

Show/hide

Query:  MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLITNRKFTSSVNKPV VSMNSRFR SAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALR+NDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1BWI6 uncharacterized protein LOC111005365 isoform X1

8.3e-108

93.14

Show/hide

Query:  MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLIT RKF  +V+KP IVSMNSRFRASAEVPDFLPADW++AHKK+P+GP LHFTAEEAIQHQLDALR+ND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1IYU2 uncharacterized protein LOC111480415 isoform X1

4.1e-107

93.14

Show/hide

Query:  MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLI+ RKFT SVNK VIVSMNSRFRASAEVPDFLPADWH AHKK+P+GP LHFTAEEAIQ QLDALR+NDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        F+PL+RSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G25605.1 unknown protein

4.0e-78

76.97

Show/hide

Query:  ASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKE
        +S++VPDFL ADW ++ +K P GPRL F+AE+A++HQLDAL++ND P  DYGIEVMY+FAGFDP  RSTYFGPFFDLGQFERFRR+FHHS+YRVLLGHK+
Subjt:  ASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKE

Query:  RKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
        RK+LSSLFVEENRFKQR+WI+G RP+EEEIF+FTM QR+GGSWDGYWLTESLL+DGD FSGG+AY
Subjt:  RKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAATACATAAAATCGACGATTCACCTCCAAAACGCCAATCAATCATCAACCATCGATTTCATCAGAGAAGAAGTAGCGGAATCCGAAGAAGAAGAAGAAAGAGAAGG
GAAGGGCAAGATTCTTCTCCGGTGGAAGAGGATGTCATGTTGTTCGTCCTTATCAGCGGCTCCTACATCCATGTCTTTGATTACCAACCGCAAATTCACGAGTTCTGTCA
ATAAACCTGTGATCGTTTCCATGAATTCTCGCTTCAGAGCTTCTGCAGAAGTTCCCGATTTTCTTCCTGCTGATTGGCACGATGCACACAAGAAGGATCCTATAGGTCCA
AGACTACATTTCACTGCAGAAGAAGCTATTCAACACCAGCTAGATGCACTGAGATTCAACGATCGACCCCATCAAGATTATGGAATTGAGGTCATGTACCAGTTTGCGGG
GTTCGATCCTCTTCGAAGGTCAACATATTTCGGTCCCTTCTTTGATTTGGGACAGTTTGAAAGATTTAGACGAGTATTCCACCATTCAACTTATCGTGTATTGTTAGGCC
ATAAAGAGAGAAAGATATTGAGCAGTTTGTTTGTAGAGGAGAACCGATTCAAGCAGCGGGTATGGATACGAGGTTGTCGCCCGAAGGAAGAAGAAATATTTCAATTCACC
ATGGTTCAGAGGGTTGGCGGCTCGTGGGATGGGTATTGGCTTACAGAGAGTTTGCTAAACGATGGGGATGCATTTAGTGGAGGCTTAGCTTACTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKYIKSTIHLQNANQSSTIDFIREEVAESEEEEEREGKGKILLRWKRMSCCSSLSAAPTSMSLITNRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGP
RLHFTAEEAIQHQLDALRFNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFT
MVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

Lsi04G021500 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome