; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G021840 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G021840
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionreplication protein A 32 kDa subunit A-like
Genome locationchr04:28916321..28921381
RNA-Seq ExpressionLsi04G021840
SyntenyLsi04G021840
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006260 - DNA replication (biological process)
GO:0006289 - nucleotide-excision repair (biological process)
GO:0000781 - chromosome, telomeric region (cellular component)
GO:0005662 - DNA replication factor A complex (cellular component)
GO:0035861 - site of double-strand break (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR004365 - OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR012340 - Nucleic acid-binding, OB-fold
IPR014646 - Replication factor A protein 2
IPR014892 - Replication protein A, C-terminal
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily
IPR040260 - Replication factor A protein-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024504.1 Replication protein A 32 kDa subunit A [Cucurbita argyrosperma subsp. argyrosperma]2.3e-11480.44Show/hide
Query:  MFSSTQFDSAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSS+QFDS  GFTSSQT DSS+AK+RE PGLVP TVKQISEASHSGEEKANF INGVDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTF
Subjt:  MFSSTQFDSAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ-----------------------------------PSEQ
        DTKQM+EIQDGMY+RVNGHLKIFQ+NKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQ                                   PSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ-----------------------------------PSEQ

Query:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKNCD+L+LDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

XP_004136317.1 replication protein A 32 kDa subunit A [Cucumis sativus]1.7e-11783.03Show/hide
Query:  MFSSTQFDSAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSSTQFDSA GFTSSQTNDSS+AKSRE PGL+PVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
Subjt:  MFSSTQFDSAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ-----------------------------------PSEQ
        DT QMEEIQDGMYVRVNGHLK+FQ+NKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ                                   PSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ-----------------------------------PSEQ

Query:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+CDELVLDYLQLPSSVAKERGIH+DELSQQLK+PMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

XP_008466326.1 PREDICTED: replication protein A 32 kDa subunit A-like [Cucumis melo]2.9e-11783.39Show/hide
Query:  MFSSTQFDSAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSSTQFDS  GFTSSQTNDSS+AKSRE PGLVPVTVKQISEASHSGEEKANFVIN VDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
Subjt:  MFSSTQFDSAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ-----------------------------------PSEQ
        DTKQMEEIQDGMYVRVNGHLK+FQ+NKQIFAFSVRPVTNFDEITFHF+ECIHDHLRNSKLQ                                   PSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ-----------------------------------PSEQ

Query:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+CDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

XP_022936562.1 replication protein A 32 kDa subunit A-like [Cucurbita moschata]9.4e-11681.18Show/hide
Query:  MFSSTQFDSAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSS+QFDS  GFTSSQTNDSS+AK+RE PGLVP TVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTF
Subjt:  MFSSTQFDSAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ-----------------------------------PSEQ
        DTKQM+EIQDGMY+RVNGHLKIFQ+NKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQ                                   PSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ-----------------------------------PSEQ

Query:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKNCD+L+LDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

XP_038897330.1 replication protein A 32 kDa subunit A-like [Benincasa hispida]5.3e-11984.5Show/hide
Query:  MFSSTQFDSAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFS TQFDSA GFTSSQTNDSS+AKSRE PGLVPVTVKQISEASHSGEEKANFV+NGVDITNV IVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
Subjt:  MFSSTQFDSAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ-----------------------------------PSEQ
        DTKQMEEIQDGMYVRVNGHLKIFQ+NKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ                                   PSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ-----------------------------------PSEQ

Query:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

TrEMBL top hitse value%identityAlignment
A0A0A0LEG7 Uncharacterized protein8.3e-11883.03Show/hide
Query:  MFSSTQFDSAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSSTQFDSA GFTSSQTNDSS+AKSRE PGL+PVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
Subjt:  MFSSTQFDSAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ-----------------------------------PSEQ
        DT QMEEIQDGMYVRVNGHLK+FQ+NKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ                                   PSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ-----------------------------------PSEQ

Query:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+CDELVLDYLQLPSSVAKERGIH+DELSQQLK+PMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

A0A1S3CR64 replication protein A 32 kDa subunit A-like1.4e-11783.39Show/hide
Query:  MFSSTQFDSAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSSTQFDS  GFTSSQTNDSS+AKSRE PGLVPVTVKQISEASHSGEEKANFVIN VDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
Subjt:  MFSSTQFDSAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ-----------------------------------PSEQ
        DTKQMEEIQDGMYVRVNGHLK+FQ+NKQIFAFSVRPVTNFDEITFHF+ECIHDHLRNSKLQ                                   PSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ-----------------------------------PSEQ

Query:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+CDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

A0A6J1CUB8 replication protein A 32 kDa subunit A6.0e-10878.15Show/hide
Query:  MFSSTQFDSAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSS+QFDS  GFTSSQ  DS++AKSRE PGLVPVTVKQISEA HSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTF
Subjt:  MFSSTQFDSAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ----------------------------------PSEQH
        DTKQM++IQDGMY+RVNGHLKIFQ N QIFAFSVRPVTN DEITFHFIECIHD+LRNSKLQ                                   S QH
Subjt:  DTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ----------------------------------PSEQH

Query:  TVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        TVDVKKN D+LVLDYLQLPSSVAKE+GIHRDELSQQLKIP+EKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  TVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

A0A6J1F8S8 replication protein A 32 kDa subunit A-like4.5e-11681.18Show/hide
Query:  MFSSTQFDSAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSS+QFDS  GFTSSQTNDSS+AK+RE PGLVP TVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTF
Subjt:  MFSSTQFDSAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ-----------------------------------PSEQ
        DTKQM+EIQDGMY+RVNGHLKIFQ+NKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQ                                   PSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ-----------------------------------PSEQ

Query:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKNCD+L+LDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

A0A6J1IMU1 replication protein A 32 kDa subunit A-like1.1e-11479.85Show/hide
Query:  MFSSTQFDSAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSS+QFDS  GFT SQTNDSS+AK+RE PGLVP TVKQISEASHSGEEKANF INGVDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTF
Subjt:  MFSSTQFDSAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ-------------------------------------PS
        DTKQM+EIQDGMY+RVNGHLKIFQ+NKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQ                                     PS
Subjt:  DTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ-------------------------------------PS

Query:  EQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        EQHTVDVKKNCD+L+LDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  EQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

SwissProt top hitse value%identityAlignment
Q5Z8L1 Replication protein A 32 kDa subunit C1.2e-2537.5Show/hide
Query:  SAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEA-----SHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTK
        SA G  ++     S  +     G VP TV  IS +     +  G     F I+GV+ TNV ++G+V     R+TD+ FT+DD TG I   RW+ D  DT+
Subjt:  SAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEA-----SHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTK

Query:  QMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPSEQHTVDVKKNCDELVLDYLQLPSS
            IQ+G+YV+V  +L  FQ  KQ  A S+RP+ NF+E+  HFIEC+H HL + + +   Q    V+ N      +Y  +PSS
Subjt:  QMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPSEQHTVDVKKNCDELVLDYLQLPSS

Q6H7J5 Replication protein A 32 kDa subunit B7.9e-4135.21Show/hide
Query:  GGFTSSQTNDSSTA---------KSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFD
        GGF  SQ  +++           KSR    L+P+TVKQI +AS + ++K+NF +NG++++ V +VG++  K +R TD++FT+DDGTG +   RW ND+ D
Subjt:  GGFTSSQTNDSSTA---------KSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFD

Query:  TKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLR----------------------------------NSKLQPSEQHT
        TK+M +IQ+G YV VNG LK FQ  +Q+ A+SVR +TNF+++T HF+ C+H HL                                   N     S    
Subjt:  TKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLR----------------------------------NSKLQPSEQHT

Query:  VDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKS
             N  +LVL+    P+ +  + G+  D +S++L +P E +   I    D G +Y+TID+ H+KS
Subjt:  VDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKS

Q6K9U2 Replication protein A 32 kDa subunit A6.9e-4542.12Show/hide
Query:  FSSTQFDSAGGFTSSQ--TNDSST-AKSRELPGLVPVTVKQISEASHS---GEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRW
        FS     S   FTSSQ    DS+T +KSR     +P+TVKQISEA  S   GE+ A FV++GV+  NV +VG VS K ERNTD++FT+DDGTG +   RW
Subjt:  FSSTQFDSAGGFTSSQ--TNDSST-AKSRELPGLVPVTVKQISEASHS---GEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRW

Query:  VNDTFDTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ---PSEQHT----------------VDVKKN---
        VND  D+ +   +Q+GMYV V G LK  Q  K+  AF++RPVT+++E+T HFI+C+  HL N+K Q   P++ ++                  VK N   
Subjt:  VNDTFDTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ---PSEQHT----------------VDVKKN---

Query:  -----------CDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSA
                    +  VL+  + P++V  E G+H DE+ ++ ++P  KI  +I  L D G IYSTIDE H+KSA
Subjt:  -----------CDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSA

Q8LFJ8 Replication protein A 32 kDa subunit B3.1e-4539.1Show/hide
Query:  SAGGFTSSQT-----NDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTK
        + GGF  SQ        SS+ K+R++  L+P+T+KQ+S AS +GE  +NF I+GVDI  V IVG++S    R T + F VDDGTG + C RW +   +T+
Subjt:  SAGGFTSSQT-----NDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTK

Query:  QMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ------------------------------PSEQ---HTVDV
        +ME ++ GMYVR++GHLKIFQ  + +  FSVRPVT+F+EI  HF EC++ H+ N+KL+                              PS Q      D 
Subjt:  QMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ------------------------------PSEQ---HTVDV

Query:  KKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
             + VL+YL  P  +  E G+H D ++++L+IP+ ++  ++  L ++G IYST+DE  FKS A
Subjt:  KKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

Q9ZQ19 Replication protein A 32 kDa subunit A1.3e-6447.64Show/hide
Query:  MFSSTQFD-----SAGGFTSSQ-----TNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT
        MFSS+QF+     S GGF SSQ      + SSTAK+R+  GLVPVTVKQI+E   S  EK+  VING+ +TNV++VG V +K E + T++ FT+DDGTG 
Subjt:  MFSSTQFD-----SAGGFTSSQ-----TNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT

Query:  IGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ----------------------------
        I CKRWV++TFD ++ME ++DG YVR++GHLK FQ   Q+  FSVRP+ +F+E+TFH+IECIH + +NS+ Q                            
Subjt:  IGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ----------------------------

Query:  ---PSEQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFK
            S+ +  + +KN D+++LDYL+ P+  A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Subjt:  ---PSEQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFK

Arabidopsis top hitse value%identityAlignment
AT2G24490.1 replicon protein A29.5e-6647.64Show/hide
Query:  MFSSTQFD-----SAGGFTSSQ-----TNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT
        MFSS+QF+     S GGF SSQ      + SSTAK+R+  GLVPVTVKQI+E   S  EK+  VING+ +TNV++VG V +K E + T++ FT+DDGTG 
Subjt:  MFSSTQFD-----SAGGFTSSQ-----TNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT

Query:  IGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ----------------------------
        I CKRWV++TFD ++ME ++DG YVR++GHLK FQ   Q+  FSVRP+ +F+E+TFH+IECIH + +NS+ Q                            
Subjt:  IGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ----------------------------

Query:  ---PSEQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFK
            S+ +  + +KN D+++LDYL+ P+  A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Subjt:  ---PSEQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFK

AT2G24490.2 replicon protein A29.5e-6647.64Show/hide
Query:  MFSSTQFD-----SAGGFTSSQ-----TNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT
        MFSS+QF+     S GGF SSQ      + SSTAK+R+  GLVPVTVKQI+E   S  EK+  VING+ +TNV++VG V +K E + T++ FT+DDGTG 
Subjt:  MFSSTQFD-----SAGGFTSSQ-----TNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT

Query:  IGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ----------------------------
        I CKRWV++TFD ++ME ++DG YVR++GHLK FQ   Q+  FSVRP+ +F+E+TFH+IECIH + +NS+ Q                            
Subjt:  IGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ----------------------------

Query:  ---PSEQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFK
            S+ +  + +KN D+++LDYL+ P+  A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Subjt:  ---PSEQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFK

AT3G02920.1 Replication protein A, subunit RPA322.2e-4639.1Show/hide
Query:  SAGGFTSSQT-----NDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTK
        + GGF  SQ        SS+ K+R++  L+P+T+KQ+S AS +GE  +NF I+GVDI  V IVG++S    R T + F VDDGTG + C RW +   +T+
Subjt:  SAGGFTSSQT-----NDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTK

Query:  QMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ------------------------------PSEQ---HTVDV
        +ME ++ GMYVR++GHLKIFQ  + +  FSVRPVT+F+EI  HF EC++ H+ N+KL+                              PS Q      D 
Subjt:  QMEEIQDGMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ------------------------------PSEQ---HTVDV

Query:  KKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
             + VL+YL  P  +  E G+H D ++++L+IP+ ++  ++  L ++G IYST+DE  FKS A
Subjt:  KKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

AT3G02920.2 Replication protein A, subunit RPA324.2e-4539.11Show/hide
Query:  STAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLK
        S+ ++R++  L+P+T+KQ+S AS +GE  +NF I+GVDI  V IVG++S    R T + F VDDGTG + C RW +   +T++ME ++ GMYVR++GHLK
Subjt:  STAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLK

Query:  IFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ------------------------------PSEQ---HTVDVKKNCDELVLDYLQLPSSV
        IFQ  + +  FSVRPVT+F+EI  HF EC++ H+ N+KL+                              PS Q      D      + VL+YL  P  +
Subjt:  IFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ------------------------------PSEQ---HTVDVKKNCDELVLDYLQLPSSV

Query:  AKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
          E G+H D ++++L+IP+ ++  ++  L ++G IYST+DE  FKS A
Subjt:  AKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCCAGTACCCAGTTTGATTCCGCCGGCGGATTTACGTCTTCGCAGACCAATGACTCATCTACAGCGAAGAGTCGAGAATTGCCGGGCTTGGTTCCGGTAACTGT
AAAACAGATAAGTGAAGCTTCACATTCTGGCGAAGAGAAGGCCAACTTTGTAATCAACGGCGTTGACATTACAAATGTTACAATCGTTGGGAAGGTCTCTGAGAAAGCTG
AAAGGAATACGGACATCACATTCACTGTAGATGATGGAACAGGAACAATTGGATGCAAAAGATGGGTAAACGACACTTTTGACACTAAGCAAATGGAGGAAATACAAGAT
GGAATGTATGTACGGGTGAACGGGCATTTGAAAATATTTCAAAATAACAAGCAAATATTTGCATTCTCTGTAAGGCCTGTTACAAATTTTGATGAAATTACCTTCCACTT
TATTGAATGCATACACGACCACTTACGGAATTCCAAGTTACAGCCATCTGAGCAGCACACTGTTGATGTTAAAAAGAACTGTGATGAATTGGTTCTCGACTATCTGCAGC
TGCCCTCCAGCGTTGCAAAAGAAAGAGGGATACACAGAGATGAACTTTCCCAACAACTGAAAATTCCAATGGAGAAAATTCTGAACTCCATAAGGTCTCTTGAAGATGAA
GGTTTGATATATTCCACCATAGATGAGTTTCATTTCAAGTCTGCTGCATAG
mRNA sequenceShow/hide mRNA sequence
ATTCTTTTCCCTCTCTCTATTGTTGATTCTTCATCGAGTTAGCTCACAGGATTTGGAAGAATGTTCTCCAGTACCCAGTTTGATTCCGCCGGCGGATTTACGTCTTCGCA
GACCAATGACTCATCTACAGCGAAGAGTCGAGAATTGCCGGGCTTGGTTCCGGTAACTGTAAAACAGATAAGTGAAGCTTCACATTCTGGCGAAGAGAAGGCCAACTTTG
TAATCAACGGCGTTGACATTACAAATGTTACAATCGTTGGGAAGGTCTCTGAGAAAGCTGAAAGGAATACGGACATCACATTCACTGTAGATGATGGAACAGGAACAATT
GGATGCAAAAGATGGGTAAACGACACTTTTGACACTAAGCAAATGGAGGAAATACAAGATGGAATGTATGTACGGGTGAACGGGCATTTGAAAATATTTCAAAATAACAA
GCAAATATTTGCATTCTCTGTAAGGCCTGTTACAAATTTTGATGAAATTACCTTCCACTTTATTGAATGCATACACGACCACTTACGGAATTCCAAGTTACAGCCATCTG
AGCAGCACACTGTTGATGTTAAAAAGAACTGTGATGAATTGGTTCTCGACTATCTGCAGCTGCCCTCCAGCGTTGCAAAAGAAAGAGGGATACACAGAGATGAACTTTCC
CAACAACTGAAAATTCCAATGGAGAAAATTCTGAACTCCATAAGGTCTCTTGAAGATGAAGGTTTGATATATTCCACCATAGATGAGTTTCATTTCAAGTCTGCTGCATA
GAATTTACCATAACTTCATAGATTTTAAATTTTACTATGCTTTAGATGTGGTTTAGCCAGACATATACTGTTTGCTTGAAACATATCCGTTTTACTGCCTTGTTCAATGT
ATATGTATTTTGAACCCTTTTTTTTT
Protein sequenceShow/hide protein sequence
MFSSTQFDSAGGFTSSQTNDSSTAKSRELPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTKQMEEIQD
GMYVRVNGHLKIFQNNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPSEQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDE
GLIYSTIDEFHFKSAA