CuGenDBv2

Gene ID	Lsi04G022650
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	t-SNARE coiled-coil homology domain-containing protein
Genome location	chr04:29662262..29668731
RNA-Seq Expression	Lsi04G022650
Synteny	Lsi04G022650
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0015031 - protein transport (biological process) GO:0005634 - nucleus (cellular component) GO:0030173 - integral component of Golgi membrane (cellular component) GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR000727 - Target SNARE coiled-coil homology domain IPR039897 - BET1-like protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6591687.1 Bet1-like protein, partial [Cucurbita argyrosperma subsp. sororia]

9.0e-41

46.96

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Query:  MGVDFSLRENEWVENKRVIKWVLRRNGRIPIGRFAGSARFASLADRREAAVS------------------DNVFILYLM---------------------
        MGV+F LRENEW++NKR+  W+LRR GRIPI RF GSA FASL DR EAA                       FIL L+                     
Subjt:  MGVDFSLRENEWVENKRVIKWVLRRNGRIPIGRFAGSARFASLADRREAAVS------------------DNVFILYLM---------------------

Query:  ----------------------------------------------ASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDE
                                                       +SSFRGGSSFYNGNAAPYRS                   REGLSTR AAASDE
Subjt:  ----------------------------------------------ASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDE

Query:  IQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQL
        IQLQIDPMQGDLDDEIVGLHSQVKRLRNIA DIGTEAK Q DFLDQL
Subjt:  IQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQL

KGN60384.2 hypothetical protein Csa_001559 [Cucumis sativus]

1.7e-31

76.7

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Query:  MASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD
        MASSSFRGGSSFYNG+AA +RS                   REGLSTRPAA+SDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD
Subjt:  MASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD

Query:  QLV
        QL+
Subjt:  QLV

XP_004136265.1 bet1-like protein At1g29060 [Cucumis sativus]

3.8e-31

77.45

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Query:  MASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD
        MASSSFRGGSSFYNG+AA +RS                   REGLSTRPAA+SDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD
Subjt:  MASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD

Query:  QL
        QL
Subjt:  QL

XP_008466185.1 PREDICTED: bet1-like protein At1g29060 [Cucumis melo]

1.5e-32

79.41

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Query:  MASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD
        MASSSFRGGSSFYNG+AAP+RS                   REGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD
Subjt:  MASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD

Query:  QL
        QL
Subjt:  QL

XP_038896659.1 bet1-like protein At1g29060 [Benincasa hispida]

5.9e-32

79.41

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Query:  MASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD
        MASSSFRGGSSFYN NAA YRS                   REGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD
Subjt:  MASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD

Query:  QL
        QL
Subjt:  QL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LHL4 t-SNARE coiled-coil homology domain-containing protein

1.8e-31

77.45

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Query:  MASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD
        MASSSFRGGSSFYNG+AA +RS                   REGLSTRPAA+SDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD
Subjt:  MASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD

Query:  QL
        QL
Subjt:  QL

A0A1S3CQM7 bet1-like protein At1g29060

7.5e-33

79.41

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Query:  MASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD
        MASSSFRGGSSFYNG+AAP+RS                   REGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD
Subjt:  MASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD

Query:  QL
        QL
Subjt:  QL

A0A5A7TAQ3 Bet1-like protein

7.5e-33

79.41

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Query:  MASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD
        MASSSFRGGSSFYNG+AAP+RS                   REGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD
Subjt:  MASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD

Query:  QL
        QL
Subjt:  QL

A0A6J1FQQ6 bet1-like protein At1g29060

2.4e-31

75.49

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Query:  MASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD
        MAS+S+RGGSSFYNG+AAPYRS                   REGLSTRPAAASDEIQLQIDPMQGDLDD+IVGLH QVKRLRNIAQ+IGTEAKSQQDFLD
Subjt:  MASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD

Query:  QL
        QL
Subjt:  QL

A0A6J1IFD8 bet1-like protein At1g29060

4.1e-31

77.45

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Query:  MASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD
        MASSSFRGGSSFYNGNAAPYRS                   REGLSTR AAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIA DIGTEAK Q DFLD
Subjt:  MASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD

Query:  QL
        QL
Subjt:  QL

SwissProt top hits

e value

%identity

Alignment

Q8L9S0 Bet1-like protein At1g29060

1.4e-20

55.88

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Query:  MASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD
        MAS+   GGS +  G A PYRS                   REGLSTR A+ S+EIQL+IDPM  DLDDEI+GLH QV++L+NIAQ+IG+EAKSQ+DFLD
Subjt:  MASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD

Query:  QL
        +L
Subjt:  QL

Q8VXX9 Bet1-like protein At4g14600

1.8e-20

56.73

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Query:  MASSSFRGGS--SFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDF
        MAS+  R G+  S Y G AAPYRS                   REGLSTR AA S+EIQL+IDPM  DLDDEI GLH QV++L+NIAQ+IG+EAK Q+DF
Subjt:  MASSSFRGGS--SFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDF

Query:  LDQL
        LD+L
Subjt:  LDQL

Arabidopsis top hits

e value

%identity

Alignment

AT1G29060.1 Target SNARE coiled-coil domain protein

1.0e-21

55.88

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Query:  MASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD
        MAS+   GGS +  G A PYRS                   REGLSTR A+ S+EIQL+IDPM  DLDDEI+GLH QV++L+NIAQ+IG+EAKSQ+DFLD
Subjt:  MASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLD

Query:  QL
        +L
Subjt:  QL

AT4G14600.1 Target SNARE coiled-coil domain protein

1.3e-21

56.73

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Query:  MASSSFRGGS--SFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDF
        MAS+  R G+  S Y G AAPYRS                   REGLSTR AA S+EIQL+IDPM  DLDDEI GLH QV++L+NIAQ+IG+EAK Q+DF
Subjt:  MASSSFRGGS--SFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDF

Query:  LDQL
        LD+L
Subjt:  LDQL

Sequences

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CDS sequence

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mRNA sequence

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ATGGGTGTTGATTTCAGTTTGAGAGAGAATGAGTGGGTGGAAAATAAGCGTGTCATCAAATGGGTTTTGCGAAGAAATGGACGCATTCCTATAGGGAGATTTGCAGGCTC
AGCCCGCTTCGCATCGCTCGCAGATAGGAGAGAAGCTGCAGTTAGTGACAATGTTTTCATTCTATATTTAATGGCGTCCAGTTCGTTTCGTGGCGGTAGTTCTTTCTACA
ATGGCAACGCCGCCCCATATCGCTCCAGGTATTTCTCGTTCTTCTGTCATGTTAAATTCCCAGTATATTTCCAGGAATTGTATAGGGAGGGGCTTAGCACAAGACCGGCG
GCCGCATCCGATGAAATTCAACTTCAGATCGATCCGATGCAAGGGGACTTGGACGACGAGATCGTTGGTCTCCACAGCCAAGTTAAAAGGCTTAGAAATATTGCTCAAGA
CATTGGGACAGAAGCAAAGTCTCAGCAAGATTTTCTAGATCAGTTGGTATGTTAATTGTTTTCTTAATACTGTTCATAGTTGTCATATTTCCACTTGTGTTTGTATTTTG
ATTTTAATTCTTGGTTTGTACTTATTGATGTTCGTACTTGTGAGGAGGAAAAAAAAAATTTGGTTGTGATTACTTGAGAAAATGGAAACGACAGATAATTGGAGTAAAAG
AAGTCAACAGGGAAAGCAATAGAATGAGAATTAAAAATTGAATGTCGCACTTTTTTAAATTATTTTGGAGCAAGGATCAGAATGCAAATGATTGTCACGGACTCACGTAT
TTATTGCTTTTGCTATTTCTTTTTTCCTTTTTCTTTTTTGTAATCCTTTTTACTTTTTCGTTTTTTTTTCCTGTTGTGGAGTTTGTATCTTTAAAGCATTAGTCTCTTTT
TATTTGCTCGATAACTTCAGAGTCTAAATTACATAGAGCTCTATCAGATTAAAAGAAACTAACTGAAGAAAATCAGTCTCATATTGATTTGTATCGGTTCAAAACATGTG
GAATTGCCGATACCTCTTTCACTTCTGTCAGATTCAAACTTCTGTTTTCTGTCTTGTTGCAGCAAATGACATTGATTAAAGCTCAAGCGGGGGTGAAGAACAACGTAAGA
AGACTGAACAAAAAAATCATTCAGAATGGATCAAATCATGTCGTCCAGGTCGTCGTATTTGCGTTGATCTGTTTCTTTATAGTATATATGTGGTCGAAAATATCCAGAAA
ATGAATGCTTTTCGTCATTACGAATGGAATACCAGTTTGTTGGCCAGGGAGAAGGGAAAAGAAACAGGAATGATGTTTAAAAGAAACAGGGAACAGTGAAAATAGGCTTT
TATTTTTCTCTTGTAGGAACAATTGAGTATACTTTTATACGTTGTAAAGATTTGTATTGTGCATTATAACTATAGTATCCGTTAATCCATTTATGCCTAAAGTTTCTAAT
TTCTGTTGAAGGCTCGACCTTCTGACACGACCAAGTATGAAAGAATTGTTACAAAGAAAACAATATCATAAATAAGTATAATTGGGGTAGGG

Protein sequence

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MGVDFSLRENEWVENKRVIKWVLRRNGRIPIGRFAGSARFASLADRREAAVSDNVFILYLMASSSFRGGSSFYNGNAAPYRSRYFSFFCHVKFPVYFQELYREGLSTRPA
AASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLVC

Lsi04G022650 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome