CuGenDBv2

Gene ID	Lsi04G022880
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Transcription initiation factor IIA subunit 2
Genome location	chr04:30011702..30012568
RNA-Seq Expression	Lsi04G022880
Synteny	Lsi04G022880
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0051123 - RNA polymerase II preinitiation complex assembly (biological process) GO:0005672 - transcription factor TFIIA complex (cellular component) GO:0003743 - translation initiation factor activity (molecular function) GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function) GO:0017025 - TBP-class protein binding (molecular function)
InterPro domains	IPR003194 - Transcription initiation factor IIA, gamma subunit IPR009083 - Transcription factor IIA, alpha-helical domain IPR015872 - Transcription initiation factor IIA, gamma subunit, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037028.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.7e-26

77.42

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK-------CASSLEPNCFVSNTC-ICRMNSGIFP
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVTIK       C S L+P+ FV+NT  IC   + IFP
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK-------CASSLEPNCFVSNTC-ICRMNSGIFP

KAG6608125.1 Transcription initiation factor IIA subunit 2, partial [Cucurbita argyrosperma subsp. sororia]

3.1e-22

100

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK

RVW65687.1 Transcription initiation factor IIA subunit 2 [Vitis vinifera]

1.1e-22

79.52

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKCASSLEPNCFVSNTCICRMNSGI
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK A             IC ++SGI
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKCASSLEPNCFVSNTCICRMNSGI

TYK06623.1 Transcription initiation factor IIA subunit 2 [Cucumis melo var. makuwa]

2.3e-25

73.47

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK-------CASSLEPNCFVSNTC-ICRMNSGIFPRGLLV
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVTIK       C S L+P+ FV+NT  IC  N  +  +G +V
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK-------CASSLEPNCFVSNTC-ICRMNSGIFPRGLLV

XP_022941425.1 transcription initiation factor IIA subunit 2-like [Cucurbita moschata]

3.1e-22

100

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK

TrEMBL top hits

e value

%identity

Alignment

A0A438G0E2 Transcription initiation factor IIA subunit 2

5.2e-23

79.52

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKCASSLEPNCFVSNTCICRMNSGI
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK A             IC ++SGI
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKCASSLEPNCFVSNTCICRMNSGI

A0A5A7T2L5 Ty3-gypsy retrotransposon protein

1.3e-26

77.42

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK-------CASSLEPNCFVSNTC-ICRMNSGIFP
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVTIK       C S L+P+ FV+NT  IC   + IFP
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK-------CASSLEPNCFVSNTC-ICRMNSGIFP

A0A5D3C3W2 Transcription initiation factor IIA subunit 2

1.1e-25

73.47

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK-------CASSLEPNCFVSNTC-ICRMNSGIFPRGLLV
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVTIK       C S L+P+ FV+NT  IC  N  +  +G +V
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK-------CASSLEPNCFVSNTC-ICRMNSGIFPRGLLV

A0A6J1J100 Transcription initiation factor IIA subunit 2

1.5e-22

100

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK

A5AJ11 Transcription initiation factor IIA subunit 2

1.5e-22

100

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK

SwissProt top hits

e value

%identity

Alignment

A2XZI2 Transcription initiation factor IIA subunit 2

3.8e-23

93.33

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV+IK
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK

O74948 Transcription initiation factor IIA subunit 2

1.2e-11

56.14

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Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK
        +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S++T K
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK

P52656 Transcription initiation factor IIA subunit 2

1.1e-09

43.59

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Query:  TFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKCASSLEPNCFVSNTCICRMN
        +++LYR +T+G  L E+LDE++Q G ++P LA +VL+QFDKS+  AL  +VK++VT K A  L    F  N     +N
Subjt:  TFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKCASSLEPNCFVSNTCICRMN

Q0DLD3 Transcription initiation factor IIA subunit 2

3.8e-23

93.33

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV+IK
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK

Q39236 Transcription initiation factor IIA subunit 2

1.0e-23

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV+IK
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK

Arabidopsis top hits

e value

%identity

Alignment

AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)

7.1e-25

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV+IK
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK

AT4G24440.2 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)

7.1e-25

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV+IK
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK

Sequences

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CDS sequence

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ATGGCAACATTTGAACTCTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGATGAAATGGTCCAGAACGGTACTCTTAGTCCTGAGCTTGCTATTCAGGT
TCTTGTCCAGTTCGATAAGTCCATGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGACTATCAAGTGCGCGTCTAGCCTTGAGCCAAATTGTTTTGTCAGTAACA
CATGTATATGTCGAATGAATAGTGGAATCTTCCCCCGGGGTCTTTTGGTTGCCACGAAGTGA

mRNA sequence

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CAAATTTCTTCGCTCGCGAAAAGCTTTGGAGCCAACGTTAACCCGGTTAGAATCAAGAAACAAGAAGAATCACATACTTACCAGCAAATCTGTAGCTACAATTCCTTGCT
TATCTTGATTTCCGAAGAAAAATGGCAACATTTGAACTCTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGATGAAATGGTCCAGAACGGTACTCTTAG
TCCTGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGTCCATGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGACTATCAAGTGCGCGTCTAGCCTTGAGC
CAAATTGTTTTGTCAGTAACACATGTATATGTCGAATGAATAGTGGAATCTTCCCCCGGGGTCTTTTGGTTGCCACGAAGTGA

Protein sequence

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MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKCASSLEPNCFVSNTCICRMNSGIFPRGLLVATK

Lsi04G022880 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome