; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G023080 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G023080
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr04:30267770..30270099
RNA-Seq ExpressionLsi04G023080
SyntenyLsi04G023080
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7817081.1 hypothetical protein G2W53_031050 [Senna tora]3.4e-2230.12Show/hide
Query:  FTWCDVARSACNDMAGLVEPSC-VKNFGKTKIRDSGLQKFIQKYVTRLNIPVDHRPITAVMKILQSLRRSDGNFVSCFPIQLHFSRRVK-----------
        FT  ++   + NDM G++  +  + N G++KI +  LQ+FIQ+ VTR ++PV+HRP+  +M++LQ  RRS  NF+   PI+L+F   +K           
Subjt:  FTWCDVARSACNDMAGLVEPSC-VKNFGKTKIRDSGLQKFIQKYVTRLNIPVDHRPITAVMKILQSLRRSDGNFVSCFPIQLHFSRRVK-----------

Query:  -LETSLVMLQYSFTTFTWRIELRVFTSESNSDDFVLCFT-----------------------------RIGDELR--------SHDSSLSDQSLSFPLFL
            SL  L + F      + L     ES    F +CFT                             RI   ++        SHDSS +D+SL F +F 
Subjt:  -LETSLVMLQYSFTTFTWRIELRVFTSESNSDDFVLCFT-----------------------------RIGDELR--------SHDSSLSDQSLSFPLFL

Query:  --KVMKHHNVTLRRINPMAKQMTSVLTSFDAPELCEHRRIKS--SASLQRPGFPAKLSLCENVEGISPDRSLLERFKEFRTGRKPSDEGICPEKKFSARL
          K    H  ++ R   M KQM  V T  D  E    + +K    + LQRPGFP++L L    + I P R  L         R+P +        FS   
Subjt:  --KVMKHHNVTLRRINPMAKQMTSVLTSFDAPELCEHRRIKS--SASLQRPGFPAKLSLCENVEGISPDRSLLERFKEFRTGRKPSDEGICPEKKFSARL

Query:  TILKELHKPIVSGIEPENLFPCNSKLSRFFKSPIVVGSSSEN
              H+P  SG  P  LF    K + F  SP   G S EN
Subjt:  TILKELHKPIVSGIEPENLFPCNSKLSRFFKSPIVVGSSSEN

TrEMBL top hitse value%identityAlignment
A0A0E0I156 Uncharacterized protein1.4e-0529.93Show/hide
Query:  LFLKVMKHHNVTLRRINPMAKQMTSVLTSFDAPELCEHRRIKSSASLQRPGFPAKLSLCENVEGISPDRSLLERFKEFRTGRKPSDEGICPEKKFSARLT
        +  +VM  H+      +P ++ + S+  S D   L     I   ++L      A+ +   +  GI PD S   R++   +   P D G  P  +F  + T
Subjt:  LFLKVMKHHNVTLRRINPMAKQMTSVLTSFDAPELCEHRRIKSSASLQRPGFPAKLSLCENVEGISPDRSLLERFKEFRTGRKPSDEGICPEKKFSARLT

Query:  ILKELHKPIVSGIEPENLFPCNSKLSRFFKSPIVVGS
        I K  H PIVSGI PE  F      SRF + P   GS
Subjt:  ILKELHKPIVSGIEPENLFPCNSKLSRFFKSPIVVGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTATAAATTTAATTGGTAACAAGTTTACCTGGTGCGATGTAGCCCGGAGTGCCTGCAATGACATGGCTGGTCTCGTTGAACCCAGTTGTGTGAAGAATTTTGGCAA
GACCAAAATCCGCGATTCTGGGCTTCAGAAATTCATCCAAAAGTATGTTACTCGACTTAACATCCCGGTGGATCACCGGCCGATCACAGCCGTGATGAAGATACTCCAAT
CCCTTCGCCGCTCCGACGGCAATTTCGTATCTTGTTTCCCAATCCAACTCCATTTTTCTCGACGTGTGAAGCTCGAAACCTCGCTCGTGATGCTGCAATACAGCTTCACC
ACGTTCACATGGCGGATCGAGCTCAGAGTCTTCACCTCCGAGTCAAATTCCGACGACTTCGTTCTCTGTTTCACCAGAATCGGCGATGAACTCCGGTCCCACGATTCCTC
TTTAAGCGACCAATCTCTATCTTTTCCGCTCTTTCTCAAGGTTATGAAGCACCACAACGTCACGCTGAGAAGAATTAATCCGATGGCGAAACAGATGACAAGTGTTTTGA
CGTCCTTCGACGCGCCAGAACTCTGTGAACATCGCCGTATAAAGTCATCGGCCTCACTGCAGAGGCCAGGGTTTCCGGCAAAGCTTTCTTTATGCGAAAATGTCGAGGGG
ATTTCACCTGATAGGTCGTTATTGGAGAGATTCAAAGAGTTTAGAACTGGAAGAAAGCCCAGCGACGAAGGTATCTGTCCAGAGAAGAAATTCTCCGCCAGATTGACGAT
ACTCAAAGAATTACACAAGCCGATCGTCTCTGGAATCGAACCGGAAAATTTATTCCCCTGCAATTCGAAGCTATCGAGATTCTTCAAGTCACCAATAGTCGTCGGAAGTT
CATCAGAGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTATAAATTTAATTGGTAACAAGTTTACCTGGTGCGATGTAGCCCGGAGTGCCTGCAATGACATGGCTGGTCTCGTTGAACCCAGTTGTGTGAAGAATTTTGGCAA
GACCAAAATCCGCGATTCTGGGCTTCAGAAATTCATCCAAAAGTATGTTACTCGACTTAACATCCCGGTGGATCACCGGCCGATCACAGCCGTGATGAAGATACTCCAAT
CCCTTCGCCGCTCCGACGGCAATTTCGTATCTTGTTTCCCAATCCAACTCCATTTTTCTCGACGTGTGAAGCTCGAAACCTCGCTCGTGATGCTGCAATACAGCTTCACC
ACGTTCACATGGCGGATCGAGCTCAGAGTCTTCACCTCCGAGTCAAATTCCGACGACTTCGTTCTCTGTTTCACCAGAATCGGCGATGAACTCCGGTCCCACGATTCCTC
TTTAAGCGACCAATCTCTATCTTTTCCGCTCTTTCTCAAGGTTATGAAGCACCACAACGTCACGCTGAGAAGAATTAATCCGATGGCGAAACAGATGACAAGTGTTTTGA
CGTCCTTCGACGCGCCAGAACTCTGTGAACATCGCCGTATAAAGTCATCGGCCTCACTGCAGAGGCCAGGGTTTCCGGCAAAGCTTTCTTTATGCGAAAATGTCGAGGGG
ATTTCACCTGATAGGTCGTTATTGGAGAGATTCAAAGAGTTTAGAACTGGAAGAAAGCCCAGCGACGAAGGTATCTGTCCAGAGAAGAAATTCTCCGCCAGATTGACGAT
ACTCAAAGAATTACACAAGCCGATCGTCTCTGGAATCGAACCGGAAAATTTATTCCCCTGCAATTCGAAGCTATCGAGATTCTTCAAGTCACCAATAGTCGTCGGAAGTT
CATCAGAGAATTGA
Protein sequenceShow/hide protein sequence
MIINLIGNKFTWCDVARSACNDMAGLVEPSCVKNFGKTKIRDSGLQKFIQKYVTRLNIPVDHRPITAVMKILQSLRRSDGNFVSCFPIQLHFSRRVKLETSLVMLQYSFT
TFTWRIELRVFTSESNSDDFVLCFTRIGDELRSHDSSLSDQSLSFPLFLKVMKHHNVTLRRINPMAKQMTSVLTSFDAPELCEHRRIKSSASLQRPGFPAKLSLCENVEG
ISPDRSLLERFKEFRTGRKPSDEGICPEKKFSARLTILKELHKPIVSGIEPENLFPCNSKLSRFFKSPIVVGSSSEN