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Lsi04G023550 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G023550
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionendoplasmic reticulum-Golgi intermediate compartment protein 3-like
Genome locationchr04:30748807..30749954
RNA-Seq ExpressionLsi04G023550
SyntenyLsi04G023550
Gene Ontology termsGO:0005783 - endoplasmic reticulum (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030134 - COPII-coated ER to Golgi transport vesicle (cellular component)
InterPro domainsIPR039542 - Endoplasmic reticulum vesicle transporter, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064241.1 endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucumis melo var. makuwa]2.1e-1595.83Show/hide
Query:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR
        MESLMN+IRKLDAYPKISEDFYNRTLSGGFITIASSIIM LLFFSELR
Subjt:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR

TYK18611.1 endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucumis melo var. makuwa]2.1e-1595.83Show/hide
Query:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR
        MESLMN+IRKLDAYPKISEDFYNRTLSGGFITIASSIIM LLFFSELR
Subjt:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR

XP_008444108.1 PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucumis melo]2.1e-1595.83Show/hide
Query:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR
        MESLMN+IRKLDAYPKISEDFYNRTLSGGFITIASSIIM LLFFSELR
Subjt:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR

XP_031740134.1 endoplasmic reticulum-Golgi intermediate compartment protein 3 [Cucumis sativus]2.1e-1595.83Show/hide
Query:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR
        MESLMN+IRKLDAYPKISEDFYNRTLSGGFITIASSIIM LLFFSELR
Subjt:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR

XP_038899846.1 endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Benincasa hispida]3.6e-1595.83Show/hide
Query:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR
        MESLMN+IRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLF SELR
Subjt:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR

TrEMBL top hitse value%identityAlignment
A0A0A0KYN4 Uncharacterized protein1.0e-1595.83Show/hide
Query:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR
        MESLMN+IRKLDAYPKISEDFYNRTLSGGFITIASSIIM LLFFSELR
Subjt:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR

A0A1S3B9N2 endoplasmic reticulum-Golgi intermediate compartment protein 3-like1.0e-1595.83Show/hide
Query:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR
        MESLMN+IRKLDAYPKISEDFYNRTLSGGFITIASSIIM LLFFSELR
Subjt:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR

A0A5A7VET7 Endoplasmic reticulum-Golgi intermediate compartment protein 3-like1.0e-1595.83Show/hide
Query:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR
        MESLMN+IRKLDAYPKISEDFYNRTLSGGFITIASSIIM LLFFSELR
Subjt:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR

A0A5D3D4Y8 Endoplasmic reticulum-Golgi intermediate compartment protein 3-like1.0e-1595.83Show/hide
Query:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR
        MESLMN+IRKLDAYPKISEDFYNRTLSGGFITIASSIIM LLFFSELR
Subjt:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR

A0A6J1IVA3 endoplasmic reticulum-Golgi intermediate compartment protein 3-like5.1e-1593.75Show/hide
Query:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR
        MESLMN+IRKLDAYPKISEDFY+RTLSGGFITI SSIIMLLLFFSELR
Subjt:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR

SwissProt top hitse value%identityAlignment
Q5EAE0 Endoplasmic reticulum-Golgi intermediate compartment protein 33.6e-0550Show/hide
Query:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR
        ME+L  ++++ DAYPK  EDF  +T  G  +TI S ++MLLLF SEL+
Subjt:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR

Q66KH2 Endoplasmic reticulum-Golgi intermediate compartment protein 31.4e-0654.17Show/hide
Query:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR
        ME+L +R+R+ DAYPK  EDF  +T  G  +T+ S +IML+LFFSEL+
Subjt:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR

Q6NVS2 Endoplasmic reticulum-Golgi intermediate compartment protein 35.0e-0756.25Show/hide
Query:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR
        MESL +R+R+ DAYPK  EDF  +T  G  +T+ S +IML+LFFSEL+
Subjt:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR

Q803I2 Endoplasmic reticulum-Golgi intermediate compartment protein 32.5e-0652.27Show/hide
Query:  MNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR
        +N++++ DAYPK  EDF  +T  G  +TI S +IML+LFFSEL+
Subjt:  MNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR

Q9Y282 Endoplasmic reticulum-Golgi intermediate compartment protein 33.6e-0550Show/hide
Query:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR
        ME+L  ++++ DAYPK  EDF  +T  G  +TI S ++MLLLF SEL+
Subjt:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR

Arabidopsis top hitse value%identityAlignment
AT1G22200.1 Endoplasmic reticulum vesicle transporter protein1.3e-1566.67Show/hide
Query:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELRPSFSPVASS
        M  +MNR+R LDAYPKI+EDFY RTLSGG IT+ASSI+ML+LFFSEL+    PV  +
Subjt:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELRPSFSPVASS

AT1G22200.2 Endoplasmic reticulum vesicle transporter protein1.3e-1566.67Show/hide
Query:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELRPSFSPVASS
        M  +MNR+R LDAYPKI+EDFY RTLSGG IT+ASSI+ML+LFFSEL+    PV  +
Subjt:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELRPSFSPVASS

AT1G36050.1 Endoplasmic reticulum vesicle transporter protein4.3e-1468.75Show/hide
Query:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR
        M  ++N++R LDAYPKI+EDFY+RTLSGG IT+ SS++M LLFFSELR
Subjt:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR

AT1G36050.2 Endoplasmic reticulum vesicle transporter protein4.3e-1468.75Show/hide
Query:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR
        M  ++N++R LDAYPKI+EDFY+RTLSGG IT+ SS++M LLFFSELR
Subjt:  MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAGCTTGATGAACAGGATTCGCAAATTGGACGCCTATCCGAAAATCAGCGAAGATTTTTACAATCGTACACTCTCCGGTGGATTCATCACTATCGCTTCCTCCAT
TATAATGTTATTGCTCTTCTTCTCCGAGCTTCGCCCCTCTTTTTCTCCAGTAGCCTCATCAGCCCATCCTCCAGTGCATTCTGTTGCAGATGGAACTCTTTATCCTCAAG
CCGATTGGACATCAATGGTGATTGTGCAACTTCATTTTGAAACCACAAAGCAGTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAGCTTGATGAACAGGATTCGCAAATTGGACGCCTATCCGAAAATCAGCGAAGATTTTTACAATCGTACACTCTCCGGTGGATTCATCACTATCGCTTCCTCCAT
TATAATGTTATTGCTCTTCTTCTCCGAGCTTCGCCCCTCTTTTTCTCCAGTAGCCTCATCAGCCCATCCTCCAGTGCATTCTGTTGCAGATGGAACTCTTTATCCTCAAG
CCGATTGGACATCAATGGTGATTGTGCAACTTCATTTTGAAACCACAAAGCAGTATTAA
Protein sequenceShow/hide protein sequence
MESLMNRIRKLDAYPKISEDFYNRTLSGGFITIASSIIMLLLFFSELRPSFSPVASSAHPPVHSVADGTLYPQADWTSMVIVQLHFETTKQY