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Lsi04G023950 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G023950
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscription factor IIIB 90 kDa subunit-like isoform X3
Genome locationchr04:31106940..31111210
RNA-Seq ExpressionLsi04G023950
SyntenyLsi04G023950
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591886.1 hypothetical protein SDJN03_14232, partial [Cucurbita argyrosperma subsp. sororia]1.6e-6355.48Show/hide
Query:  MSGNGSSSKFRI----SFRVQSLTGGTSARFFFSESLSSAASDLVALCAFRFVDQHQWKYSGRKWQMKTADASLFTMFFKRKEERSTSNDESEDLGDVLD
        + GNGSSS+FRI     FRVQ LTGGT+A FFFSE LSSAASDL+    F  +             MKTA+ASLF++  K K+E S+S+DESEDLGDVLD
Subjt:  MSGNGSSSKFRI----SFRVQSLTGGTSARFFFSESLSSAASDLVALCAFRFVDQHQWKYSGRKWQMKTADASLFTMFFKRKEERSTSNDESEDLGDVLD

Query:  SE---------------------------DQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQADTETSHEMLTKKKLSSVIHMIVSGLFWRGEGYR
        SE                           +QAAKK+G D+VGAAA+VKKSKKRQR  EAPIN PAQA+T+T+ E+LTKK                    R
Subjt:  SE---------------------------DQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQADTETSHEMLTKKKLSSVIHMIVSGLFWRGEGYR

Query:  LSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWNDLED-----NHTDTMFEEN-VDIEGEDATETYDNEYYDFENEEEYGYGYGDYGAEE
        LSSKFNFD LDKLF+DTPAPDSS+KQ ASS++ENS S Q+H  N LE+     NH DT+ EEN +D E ED  E Y NEYYD+ENEEEYGYGYGDYG EE
Subjt:  LSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWNDLED-----NHTDTMFEEN-VDIEGEDATETYDNEYYDFENEEEYGYGYGDYGAEE

Query:  E
        E
Subjt:  E

XP_008444162.1 PREDICTED: uncharacterized protein LOC103487591 isoform X2 [Cucumis melo]3.1e-5963.4Show/hide
Query:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSE---------------------------DQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ
        MK ADASLF+MF + K++ S SND+SEDLGDV DSE                           DQAAKKQG +IVGAAAVVKKSKKR+RK EAPIN PAQ
Subjt:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSE---------------------------DQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ

Query:  ADT-ETSHEMLTKKKLSSVIHMIVSGLFWRGEGYRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWN----DLEDNHTDTMFEENVDI
        ADT ET+HEML KK                    RLSSKF+FD LDKL  DTPAPDSSEKQGASS KENSSS QSHC N    D EDNHT+T+FEEN+DI
Subjt:  ADT-ETSHEMLTKKKLSSVIHMIVSGLFWRGEGYRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWN----DLEDNHTDTMFEENVDI

Query:  EGEDATETYDNEYYDFENEEEYGYGYGDYGAEEEY
        EGED TETY NEYYDF+NEEEYGYGY DYG EEEY
Subjt:  EGEDATETYDNEYYDFENEEEYGYGYGDYGAEEEY

XP_016899849.1 PREDICTED: uncharacterized protein LOC103487591 isoform X1 [Cucumis melo]7.7e-5863.14Show/hide
Query:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSE---------------------------DQAAKKQGRDIVGAAAVVKKSKK-RQRKKEAPINNPA
        MK ADASLF+MF + K++ S SND+SEDLGDV DSE                           DQAAKKQG +IVGAAAVVKKSKK R+RK EAPIN PA
Subjt:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSE---------------------------DQAAKKQGRDIVGAAAVVKKSKK-RQRKKEAPINNPA

Query:  QADT-ETSHEMLTKKKLSSVIHMIVSGLFWRGEGYRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWN----DLEDNHTDTMFEENVD
        QADT ET+HEML KK                    RLSSKF+FD LDKL  DTPAPDSSEKQGASS KENSSS QSHC N    D EDNHT+T+FEEN+D
Subjt:  QADT-ETSHEMLTKKKLSSVIHMIVSGLFWRGEGYRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWN----DLEDNHTDTMFEENVD

Query:  IEGEDATETYDNEYYDFENEEEYGYGYGDYGAEEEY
        IEGED TETY NEYYDF+NEEEYGYGY DYG EEEY
Subjt:  IEGEDATETYDNEYYDFENEEEYGYGYGDYGAEEEY

XP_023536162.1 uncharacterized protein LOC111797407 [Cucurbita pepo subsp. pepo]7.9e-6355.15Show/hide
Query:  MSGNGSSSKFRI----SFRVQSLTGGTSARFFFSESLSSAASDLVALCAFRFVDQHQWKYSGRKWQMKTADASLFTMFFKRKEERSTSNDESEDLGDVLD
        + GNGSSS+FRI    SFRVQ LTGG+SA  FFSE LS AASDL+    F  +             MKTA+ASLF++  + K+E S+S+DESEDLGDVLD
Subjt:  MSGNGSSSKFRI----SFRVQSLTGGTSARFFFSESLSSAASDLVALCAFRFVDQHQWKYSGRKWQMKTADASLFTMFFKRKEERSTSNDESEDLGDVLD

Query:  SE---------------------------DQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQADTETSHEMLTKKKLSSVIHMIVSGLFWRGEGYR
        SE                           +QAAKK+G D+VGAAA+VKKSKKRQR  EAPIN PAQA+T+ + EMLTKK                    R
Subjt:  SE---------------------------DQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQADTETSHEMLTKKKLSSVIHMIVSGLFWRGEGYR

Query:  LSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWNDLED-----NHTDTMFEEN-VDIEGEDATETYDNEYYDFENEEEYGYGYGDYGAEE
        LSSKFNFD LDKLF+DTPAPDSS+KQ ASS++ENS S Q+H  N LE+     NH DT+ EEN +D E ED TE Y NEYYD+ENEEEYGYGYGDYG EE
Subjt:  LSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWNDLED-----NHTDTMFEEN-VDIEGEDATETYDNEYYDFENEEEYGYGYGDYGAEE

Query:  E
        E
Subjt:  E

XP_038896204.1 transcription factor IIIB 60 kDa subunit-like [Benincasa hispida]9.7e-6165.22Show/hide
Query:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSE---------------------------DQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ
        MKT DASLF+MFFK K++ S SN+ESEDLGDVLD E                           DQ AKK GRD+VGAAA++KKSKKR R+KEAPINNPAQ
Subjt:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSE---------------------------DQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ

Query:  ADTETSHEMLTKKKLSSVIHMIVSGLFWRGEGYRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWNDLEDNHTDTMFEENVDIEGEDA
        A TE S EMLTKK                    RLSSKFNFD LDKLFSDTP PDS EKQGASS KENSSSE      DLEDNHTDTMFEENVDIEGED 
Subjt:  ADTETSHEMLTKKKLSSVIHMIVSGLFWRGEGYRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWNDLEDNHTDTMFEENVDIEGEDA

Query:  TETYDNEYYDFENEEEYGYGYGDYGAEEEY
        TETY NEYYDFENEEEYGYG+ DYGAEEEY
Subjt:  TETYDNEYYDFENEEEYGYGYGDYGAEEEY

TrEMBL top hitse value%identityAlignment
A0A1S3B993 uncharacterized protein LOC103487591 isoform X21.5e-5963.4Show/hide
Query:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSE---------------------------DQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ
        MK ADASLF+MF + K++ S SND+SEDLGDV DSE                           DQAAKKQG +IVGAAAVVKKSKKR+RK EAPIN PAQ
Subjt:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSE---------------------------DQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ

Query:  ADT-ETSHEMLTKKKLSSVIHMIVSGLFWRGEGYRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWN----DLEDNHTDTMFEENVDI
        ADT ET+HEML KK                    RLSSKF+FD LDKL  DTPAPDSSEKQGASS KENSSS QSHC N    D EDNHT+T+FEEN+DI
Subjt:  ADT-ETSHEMLTKKKLSSVIHMIVSGLFWRGEGYRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWN----DLEDNHTDTMFEENVDI

Query:  EGEDATETYDNEYYDFENEEEYGYGYGDYGAEEEY
        EGED TETY NEYYDF+NEEEYGYGY DYG EEEY
Subjt:  EGEDATETYDNEYYDFENEEEYGYGYGDYGAEEEY

A0A1S4DV37 uncharacterized protein LOC103487591 isoform X13.7e-5863.14Show/hide
Query:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSE---------------------------DQAAKKQGRDIVGAAAVVKKSKK-RQRKKEAPINNPA
        MK ADASLF+MF + K++ S SND+SEDLGDV DSE                           DQAAKKQG +IVGAAAVVKKSKK R+RK EAPIN PA
Subjt:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSE---------------------------DQAAKKQGRDIVGAAAVVKKSKK-RQRKKEAPINNPA

Query:  QADT-ETSHEMLTKKKLSSVIHMIVSGLFWRGEGYRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWN----DLEDNHTDTMFEENVD
        QADT ET+HEML KK                    RLSSKF+FD LDKL  DTPAPDSSEKQGASS KENSSS QSHC N    D EDNHT+T+FEEN+D
Subjt:  QADT-ETSHEMLTKKKLSSVIHMIVSGLFWRGEGYRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWN----DLEDNHTDTMFEENVD

Query:  IEGEDATETYDNEYYDFENEEEYGYGYGDYGAEEEY
        IEGED TETY NEYYDF+NEEEYGYGY DYG EEEY
Subjt:  IEGEDATETYDNEYYDFENEEEYGYGYGDYGAEEEY

A0A5D3E7S6 Transcription factor IIIB 90 kDa subunit-like isoform X31.5e-5963.4Show/hide
Query:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSE---------------------------DQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ
        MK ADASLF+MF + K++ S SND+SEDLGDV DSE                           DQAAKKQG +IVGAAAVVKKSKKR+RK EAPIN PAQ
Subjt:  MKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSE---------------------------DQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQ

Query:  ADT-ETSHEMLTKKKLSSVIHMIVSGLFWRGEGYRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWN----DLEDNHTDTMFEENVDI
        ADT ET+HEML KK                    RLSSKF+FD LDKL  DTPAPDSSEKQGASS KENSSS QSHC N    D EDNHT+T+FEEN+DI
Subjt:  ADT-ETSHEMLTKKKLSSVIHMIVSGLFWRGEGYRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWN----DLEDNHTDTMFEENVDI

Query:  EGEDATETYDNEYYDFENEEEYGYGYGDYGAEEEY
        EGED TETY NEYYDF+NEEEYGYGY DYG EEEY
Subjt:  EGEDATETYDNEYYDFENEEEYGYGYGDYGAEEEY

A0A6J1FCP7 uncharacterized protein LOC1114429041.4e-5754.04Show/hide
Query:  SFRVQSLTGGTSARFFFSESLSSAASDLVALCAFRFVDQHQWKYSGRKWQMKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSE--------------
        SFRV  LTGG+SA  FFS   SSA SDL+    F  +             MKTA+ASLF++  K K+E S+S+DESEDLGDVLDSE              
Subjt:  SFRVQSLTGGTSARFFFSESLSSAASDLVALCAFRFVDQHQWKYSGRKWQMKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSE--------------

Query:  -------------DQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQADTETSHEMLTKKKLSSVIHMIVSGLFWRGEGYRLSSKFNFDALDKLFSD
                     +QAAKK+G D+VGAAA+VKKSKKRQR  EAPIN PAQA+T+T+ E+LTKK                    RLSSKFNFD LDKLF+D
Subjt:  -------------DQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQADTETSHEMLTKKKLSSVIHMIVSGLFWRGEGYRLSSKFNFDALDKLFSD

Query:  TPAPDSSEKQGASSWKENSSSEQSHCWNDLED-----NHTDTMFEEN-VDIEGEDATETYDNEYYDFENEEEYGYGYGDYGAEEE
        TPAPDSS+KQ ASS++ENS S Q+H  N LE+     NH DT+ EEN +D E ED  E Y NEYYD+ENEEEYGYGYGDYG EEE
Subjt:  TPAPDSSEKQGASSWKENSSSEQSHCWNDLED-----NHTDTMFEEN-VDIEGEDATETYDNEYYDFENEEEYGYGYGDYGAEEE

A0A6J1IK57 uncharacterized protein LOC1114759761.1e-5753.33Show/hide
Query:  SFRVQSLTGGTSARFFFSESLSSAASDLVALCAFRFVDQHQWKYSGRKWQMKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSE--------------
        S+RVQ L GG+ A  FFSE LSSAASD +             ++    + MKTA+ASLF++  K K+E S+S+D SEDLGDVLDSE              
Subjt:  SFRVQSLTGGTSARFFFSESLSSAASDLVALCAFRFVDQHQWKYSGRKWQMKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSE--------------

Query:  -------------DQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQADTETSHEMLTKKKLSSVIHMIVSGLFWRGEGYRLSSKFNFDALDKLFSD
                     +QAAKK+G D+VGAAA+VKKSKKRQR  EAPIN PAQA+T+T+ E+LTKK                    RLSSKFNFD LDKLF+D
Subjt:  -------------DQAAKKQGRDIVGAAAVVKKSKKRQRKKEAPINNPAQADTETSHEMLTKKKLSSVIHMIVSGLFWRGEGYRLSSKFNFDALDKLFSD

Query:  TPAPDSSEKQGASSWKENSSSEQSHCWNDLED-----NHTDTMFEEN-VDIEGEDATETYDNEYYDFENEEEYGYGYGDYGAEEE
        TPAPDSS+KQ ASS++ENS S Q+H  N LE+     NH DT+ EEN +D E ED TE Y NEYYD+ENEEEYGYGYG+YG EEE
Subjt:  TPAPDSSEKQGASSWKENSSSEQSHCWNDLED-----NHTDTMFEEN-VDIEGEDATETYDNEYYDFENEEEYGYGYGDYGAEEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGGCAACGGATCGTCGTCGAAATTCCGAATTTCCTTTCGTGTTCAATCACTAACCGGCGGAACTAGTGCGCGTTTTTTCTTCTCGGAGTCTCTTTCATCGGCGGC
GAGTGATTTGGTTGCGCTCTGCGCATTCCGATTCGTTGATCAACATCAGTGGAAATACAGTGGGCGTAAATGGCAAATGAAAACTGCTGATGCATCTTTGTTCACCATGT
TCTTCAAACGTAAGGAAGAAAGGTCTACGTCCAATGATGAGTCGGAGGACCTTGGTGATGTTCTTGACAGTGAGGACCAAGCAGCTAAGAAACAAGGGCGTGATATTGTT
GGAGCTGCAGCTGTGGTTAAAAAATCAAAGAAGAGGCAAAGGAAAAAAGAAGCTCCAATAAACAACCCTGCTCAAGCCGATACTGAAACTTCGCATGAAATGCTTACTAA
GAAGAAACTCTCGAGTGTAATCCACATGATTGTTTCGGGGTTGTTTTGGCGTGGGGAAGGGTATAGGCTCAGTTCAAAATTCAACTTTGACGCGTTGGACAAGCTCTTCT
CTGATACACCTGCACCTGATTCAAGCGAAAAGCAGGGAGCCTCGAGTTGGAAAGAAAATAGTTCATCCGAACAAAGCCATTGTTGGAACGACCTTGAAGACAATCATACT
GACACGATGTTTGAAGAAAACGTCGACATTGAAGGTGAAGATGCCACAGAAACTTATGATAATGAGTATTATGATTTCGAAAACGAGGAAGAGTATGGCTATGGATACGG
TGACTATGGTGCTGAGGAGGAATATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCGGCAACGGATCGTCGTCGAAATTCCGAATTTCCTTTCGTGTTCAATCACTAACCGGCGGAACTAGTGCGCGTTTTTTCTTCTCGGAGTCTCTTTCATCGGCGGC
GAGTGATTTGGTTGCGCTCTGCGCATTCCGATTCGTTGATCAACATCAGTGGAAATACAGTGGGCGTAAATGGCAAATGAAAACTGCTGATGCATCTTTGTTCACCATGT
TCTTCAAACGTAAGGAAGAAAGGTCTACGTCCAATGATGAGTCGGAGGACCTTGGTGATGTTCTTGACAGTGAGGACCAAGCAGCTAAGAAACAAGGGCGTGATATTGTT
GGAGCTGCAGCTGTGGTTAAAAAATCAAAGAAGAGGCAAAGGAAAAAAGAAGCTCCAATAAACAACCCTGCTCAAGCCGATACTGAAACTTCGCATGAAATGCTTACTAA
GAAGAAACTCTCGAGTGTAATCCACATGATTGTTTCGGGGTTGTTTTGGCGTGGGGAAGGGTATAGGCTCAGTTCAAAATTCAACTTTGACGCGTTGGACAAGCTCTTCT
CTGATACACCTGCACCTGATTCAAGCGAAAAGCAGGGAGCCTCGAGTTGGAAAGAAAATAGTTCATCCGAACAAAGCCATTGTTGGAACGACCTTGAAGACAATCATACT
GACACGATGTTTGAAGAAAACGTCGACATTGAAGGTGAAGATGCCACAGAAACTTATGATAATGAGTATTATGATTTCGAAAACGAGGAAGAGTATGGCTATGGATACGG
TGACTATGGTGCTGAGGAGGAATATTAGTAGATGATTTTTTATACAAAAGCTTCTTAATTAATTAATTGCCTGAGGTCATGAGATGGATTCCAGATAACAGCAACAAGTC
CATGAAAGAGCTTTGAATTAATTTTGGGGGTTTGATGACAGATTTAGGAAACTGCAACAGTATAGTCGATGCTTCTCTTTTTCTTTCCTCTCTTGAGCTTTGGGCAATGT
TCATGAAAGAAGAAAGAAAACCATAAGGTCCATAACTATAAATATAAAGAGAGGCTTTTATGGGACATGACTCATTATAGTGAAACTGAGTTAAGGATATGACAAAAAGG
GGAGAAAGAAGCATAAATGGGGTTTTATTTGGCTGGGAGAAATGAAATTGTGTGCATATTTCAAGAACACAATGGCTTTAAATTAAAGGCCACATTTTTCGTCCAGCTCT
GGTAATTATTGCCTTGTTATTGTTCAATTCAGCC
Protein sequenceShow/hide protein sequence
MSGNGSSSKFRISFRVQSLTGGTSARFFFSESLSSAASDLVALCAFRFVDQHQWKYSGRKWQMKTADASLFTMFFKRKEERSTSNDESEDLGDVLDSEDQAAKKQGRDIV
GAAAVVKKSKKRQRKKEAPINNPAQADTETSHEMLTKKKLSSVIHMIVSGLFWRGEGYRLSSKFNFDALDKLFSDTPAPDSSEKQGASSWKENSSSEQSHCWNDLEDNHT
DTMFEENVDIEGEDATETYDNEYYDFENEEEYGYGYGDYGAEEEY