CuGenDBv2

Gene ID	Lsi04G024100
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Extensin-like protein
Genome location	chr04:31234304..31234795
RNA-Seq Expression	Lsi04G024100
Synteny	Lsi04G024100
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8649619.1 hypothetical protein Csa_012837 [Cucumis sativus]

3.2e-62

81.37

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Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHSP--LHHQKLKPPPAVSHFLHPSNSFHSSPRTRSDRWRFSRSNLVEPEQVSSGCFPSPLPNRKS
        MD DEFYRQPAAVPFKWEIKPGVPRNHHRLR SPTHSP   H QKLKPPPAVSHF HP NS HSSPRT+S+RWRF RS  V     SSGCFPSPLPNRKS
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHSP--LHHQKLKPPPAVSHFLHPSNSFHSSPRTRSDRWRFSRSNLVEPEQVSSGCFPSPLPNRKS

Query:  AKTASRK-SEPDYTSESETLSRWSVSNRKSISPFRNSVSSSPSSFSSYQSSPRPTSDTEWA
         K+ SRK  EPDY+S+ +TLSRWSVS+RKSISPFR SVSSSPSSFSSYQSSPRPTSDTEWA
Subjt:  AKTASRK-SEPDYTSESETLSRWSVSNRKSISPFRNSVSSSPSSFSSYQSSPRPTSDTEWA

XP_004142634.1 uncharacterized protein LOC101220757 [Cucumis sativus]

1.8e-65

81.93

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Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHSP--LHHQKLKPPPAVSHFLHPSNSFHSSPRTRSDRWRFSRSNLVEPEQVSSGCFPSPLPNRKS
        MD DEFYRQPAAVPFKWEIKPGVPRNHHRLR SPTHSP   H QKLKPPPAVSHF HP NS HSSPRT+S+RWRF RS  V     SSGCFPSPLPNRKS
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHSP--LHHQKLKPPPAVSHFLHPSNSFHSSPRTRSDRWRFSRSNLVEPEQVSSGCFPSPLPNRKS

Query:  AKTASRK-SEPDYTSESETLSRWSVSNRKSISPFRNSVSSSPSSFSSYQSSPRPTSDTEWAGFGLF
         K+ SRK  EPDY+S+ +TLSRWSVS+RKSISPFR SVSSSPSSFSSYQSSPRPTSDTEWAGFGLF
Subjt:  AKTASRK-SEPDYTSESETLSRWSVSNRKSISPFRNSVSSSPSSFSSYQSSPRPTSDTEWAGFGLF

XP_008444194.1 PREDICTED: uncharacterized protein LOC103487607 [Cucumis melo]

1.2e-64

82.63

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Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHSP--LHHQKLKPPPAVSHFLHPSNSFHSSPRTRSDRWRFSRSNLVEPEQVSSGCFPSPLPNRKS
        MD DEFYR+PAAVPFKWEIKPGVPRNHHR RQSPTHSP   H QKLKPPPAVSHF HPSNS HSSPRTRSDRWRF RS  V     SSGCFPSPLPNRKS
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHSP--LHHQKLKPPPAVSHFLHPSNSFHSSPRTRSDRWRFSRSNLVEPEQVSSGCFPSPLPNRKS

Query:  AKTASRK-SEPDYTSESETLSRWSVSNRKSISPFRNSV-SSSPSSFSSYQSSPRPTSDTEWAGFGLF
         K  SRK  EPDY+S+ +TLSRWSVS+RKSISPFR SV SSSPSSFSSYQSSPRPTSDTEWAGFGLF
Subjt:  AKTASRK-SEPDYTSESETLSRWSVSNRKSISPFRNSV-SSSPSSFSSYQSSPRPTSDTEWAGFGLF

XP_022131529.1 uncharacterized protein DKFZp434B061-like [Momordica charantia]

4.6e-61

76.92

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Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHSPLHHQKLKPPPAVSHFLHPSN----SFHSSPRTRSDRWRFSRSNLVEPEQVS--SGCFPSPLP
        MD DEFYR+PAAVPFKWEIKPGVPR HHRL  SP+  P   QKLKPPP VSHF  PS     S HSS RTRSDRWRF+RS+L EP QVS  +GCFPSP P
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHSPLHHQKLKPPPAVSHFLHPSN----SFHSSPRTRSDRWRFSRSNLVEPEQVS--SGCFPSPLP

Query:  NRKSAKTASRKSEPDYTSESETLSRWSVSNRKSISPFRNSVSSSPSSFSSYQSSPRPTSDTEWAGFGLF
        NRKS K+ +RK EP+YT+E ETLSRWSVS+RKSISPFR+SVSSSPSSFSSYQSSPRPTSDTEWAGFGLF
Subjt:  NRKSAKTASRKSEPDYTSESETLSRWSVSNRKSISPFRNSVSSSPSSFSSYQSSPRPTSDTEWAGFGLF

XP_038899347.1 uncharacterized protein LOC120086669 [Benincasa hispida]

1.0e-68

84.15

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Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHS-PLHHQKLKPPPAVSHFLHPSNSFHSSPRTRSDRWRFSRSNLVEPEQVSSGCFPSPLPNRKSA
        MDVDEFYRQPAAVPFKWEIKPGVP+NHHRLR SPTHS P HHQKLKPPP+VS+FLHPSNS HSS RTRSDRWRFS     +PEQVSSGCFPSPLPNRKSA
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHS-PLHHQKLKPPPAVSHFLHPSNSFHSSPRTRSDRWRFSRSNLVEPEQVSSGCFPSPLPNRKSA

Query:  KTASRKSEPDYTSESETLSRWSVSNRKSISPFRNSVSSSPSSFSSYQSSPRPTSDTEWAGFGLF
        K+ SR  EPDY+S  E+LSRWSVS+RKSISPFR SVSSSPSS+SSY SSPRPTSDTEWAGFGLF
Subjt:  KTASRKSEPDYTSESETLSRWSVSNRKSISPFRNSVSSSPSSFSSYQSSPRPTSDTEWAGFGLF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KY52 Uncharacterized protein

1.8e-42

77.05

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Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHSP--LHHQKLKPPPAVSHFLHPSNSFHSSPRTRSDRWRFSRSNLVEPEQVSSGCFPSPLPNRKS
        MD DEFYRQPAAVPFKWEIKPGVPRNHHRLR SPTHSP   H QKLKPPPAVSHF HP NS HSSPRT+S+RWRF RS  V     SSGCFPSPLPNRKS
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHSP--LHHQKLKPPPAVSHFLHPSNSFHSSPRTRSDRWRFSRSNLVEPEQVSSGCFPSPLPNRKS

Query:  AKTASRK-SEPDYTSESETLSR
         K+ SRK  EPDY+S+ +TLSR
Subjt:  AKTASRK-SEPDYTSESETLSR

A0A1S3BAM4 uncharacterized protein LOC103487607

5.6e-65

82.63

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Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHSP--LHHQKLKPPPAVSHFLHPSNSFHSSPRTRSDRWRFSRSNLVEPEQVSSGCFPSPLPNRKS
        MD DEFYR+PAAVPFKWEIKPGVPRNHHR RQSPTHSP   H QKLKPPPAVSHF HPSNS HSSPRTRSDRWRF RS  V     SSGCFPSPLPNRKS
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHSP--LHHQKLKPPPAVSHFLHPSNSFHSSPRTRSDRWRFSRSNLVEPEQVSSGCFPSPLPNRKS

Query:  AKTASRK-SEPDYTSESETLSRWSVSNRKSISPFRNSV-SSSPSSFSSYQSSPRPTSDTEWAGFGLF
         K  SRK  EPDY+S+ +TLSRWSVS+RKSISPFR SV SSSPSSFSSYQSSPRPTSDTEWAGFGLF
Subjt:  AKTASRK-SEPDYTSESETLSRWSVSNRKSISPFRNSV-SSSPSSFSSYQSSPRPTSDTEWAGFGLF

A0A6J1BQH3 uncharacterized protein DKFZp434B061-like

2.2e-61

76.92

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Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHSPLHHQKLKPPPAVSHFLHPSN----SFHSSPRTRSDRWRFSRSNLVEPEQVS--SGCFPSPLP
        MD DEFYR+PAAVPFKWEIKPGVPR HHRL  SP+  P   QKLKPPP VSHF  PS     S HSS RTRSDRWRF+RS+L EP QVS  +GCFPSP P
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHSPLHHQKLKPPPAVSHFLHPSN----SFHSSPRTRSDRWRFSRSNLVEPEQVS--SGCFPSPLP

Query:  NRKSAKTASRKSEPDYTSESETLSRWSVSNRKSISPFRNSVSSSPSSFSSYQSSPRPTSDTEWAGFGLF
        NRKS K+ +RK EP+YT+E ETLSRWSVS+RKSISPFR+SVSSSPSSFSSYQSSPRPTSDTEWAGFGLF
Subjt:  NRKSAKTASRKSEPDYTSESETLSRWSVSNRKSISPFRNSVSSSPSSFSSYQSSPRPTSDTEWAGFGLF

A0A6J1FHC7 uncharacterized protein LOC111445775

1.3e-58

75.76

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Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHSPLHHQKLKPPPAV--SHFLHPSNSFHSSPRTRSDRWRFSRSNLVEPEQVSSGCFPSPLPNRKS
        MDVDEFYRQPAAVPFKWEIKPGVPRNHHRL Q PTHSP  H+KLKPPPAV  + F   SNS     RTRSDRW  ++S L EPEQVS GCF SPLPNRK+
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHSPLHHQKLKPPPAV--SHFLHPSNSFHSSPRTRSDRWRFSRSNLVEPEQVSSGCFPSPLPNRKS

Query:  AKTASRKSEPDYTSESETLSRWSVSNRKSISPFRNSVSSSPSSFSSYQSSPRPTSDTEWAGFGLF
        +K  +RK EPDY SE ETL RWSVS++KSISPFRNSVSS  SS SSYQSSPRPTSD+EWAGFGLF
Subjt:  AKTASRKSEPDYTSESETLSRWSVSNRKSISPFRNSVSSSPSSFSSYQSSPRPTSDTEWAGFGLF

A0A6J1ISY3 uncharacterized protein LOC111480325

9.6e-57

74.25

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Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHSPLHHQKLKPPPAV--SHFLHPSNSFHSSPRTRSDRWRFSRSNLVEPEQVSSGCFPSPLPNRKS
        MDVDEFYRQPAAVPFKWEIKPGVPRNHH L   PTHSP  H+KLKPPPAV  + F   SNS     RTRSDRW  S+S L EPEQVS GCF SPLPNRK+
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHSPLHHQKLKPPPAV--SHFLHPSNSFHSSPRTRSDRWRFSRSNLVEPEQVSSGCFPSPLPNRKS

Query:  AKTASRKSEPDYTSESETLSRWSVSNRKSISPFRNSVSS--SPSSFSSYQSSPRPTSDTEWAGFGLF
         K  +RK EPD  SE ETL RWS+S++KSISPFRNSVSS  SPSS SSYQSSPRPTSD+EWAGFGLF
Subjt:  AKTASRKSEPDYTSESETLSRWSVSNRKSISPFRNSVSS--SPSSFSSYQSSPRPTSDTEWAGFGLF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G21695.1 hydroxyproline-rich glycoprotein family protein

5.8e-06

29.7

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Query:  MDVDEFYRQPAAVPFKWEIKPGVPR-----NHHRLRQSPTHSPLHHQKLK-PPPAVSHFLHPSNSFHSSPRTR--SDRWRFSRSNLVEPEQVSSGCFPSP
        +D D+ +++P AVPFKWEI+PGVP+     +   L Q P  + L   KLK  PP+ S     S+SF S  R+R  S         L  P    S C  SP
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPR-----NHHRLRQSPTHSPLHHQKLK-PPPAVSHFLHPSNSFHSSPRTR--SDRWRFSRSNLVEPEQVSSGCFPSP

Query:  LPNRKSA----------------------------------KTASRKSEPDYTSESETLSRWSVSNRKSISPFRNSVSSSPSSFSSYQSSPRPTSDTEWA
         P  +S+                                  + +S  SE D   ES T    S  +    SP  +  SS  SSFSS + SP   +D++ +
Subjt:  LPNRKSA----------------------------------KTASRKSEPDYTSESETLSRWSVSNRKSISPFRNSVSSSPSSFSSYQSSPRPTSDTEWA

Query:  GF
         +
Subjt:  GF

AT1G77400.1 CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789)

1.1e-20

34.19

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Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHSPL---------------HHQ------------------------------------KLKP---
        +DVD+ +++P  +PF WEI+PGVP+   R+ Q    +PL               H Q                                    KLKP   
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHSPL---------------HHQ------------------------------------KLKP---

Query:  PPAVSHFLHPSNSFHSSPRTRSDRWRFSRSNLVEPEQ----------VSSGCFPSP---LPNRKSA----KTASRKSEPDYTSESETLSRWSVSNRKSIS
        P ++S F  P  SF SSPR  S+RW+  R N + PE              GCFPSP   L   KS     K+ SR     Y S+ ET+S W+VS+R+S+S
Subjt:  PPAVSHFLHPSNSFHSSPRTRSDRWRFSRSNLVEPEQ----------VSSGCFPSP---LPNRKSA----KTASRKSEPDYTSESETLSRWSVSNRKSIS

Query:  PFRNSVSSSPSSFSSYQSSPRPTSDTEWAGFGLF
        P      S  SSFSS + SPR  ++ EW GFGLF
Subjt:  PFRNSVSSSPSSFSSYQSSPRPTSDTEWAGFGLF

Sequences

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CDS sequence

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ATGGACGTCGATGAATTTTACCGGCAACCGGCTGCTGTTCCTTTCAAATGGGAGATTAAACCCGGCGTCCCCAGAAATCACCACCGCCTCCGGCAGTCTCCAACTCACTC
TCCTCTACACCATCAAAAGCTGAAGCCTCCTCCTGCTGTATCCCACTTCCTCCATCCTTCAAACTCCTTTCACTCCTCCCCACGAACCCGGTCCGACCGGTGGCGGTTTT
CCCGGTCCAACCTCGTCGAACCCGAGCAAGTCTCGTCCGGTTGCTTCCCCTCGCCTTTGCCCAACCGGAAATCGGCCAAGACTGCGAGCCGGAAATCCGAACCGGATTAC
ACCTCTGAATCGGAGACTTTGTCGCGGTGGTCGGTTTCCAACAGGAAGTCGATTTCGCCGTTTCGAAATTCAGTTTCGTCGTCGCCGTCGTCGTTCTCGTCGTACCAGTC
ATCGCCCCGTCCGACCAGTGATACGGAATGGGCAGGGTTTGGGCTCTTTTGA

mRNA sequence

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Protein sequence

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MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLRQSPTHSPLHHQKLKPPPAVSHFLHPSNSFHSSPRTRSDRWRFSRSNLVEPEQVSSGCFPSPLPNRKSAKTASRKSEPDY
TSESETLSRWSVSNRKSISPFRNSVSSSPSSFSSYQSSPRPTSDTEWAGFGLF

Lsi04G024100 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome