CuGenDBv2

Gene ID	Lsi04G024170
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	60S ribosomal protein L22-2
Genome location	chr04:31297833..31300919
RNA-Seq Expression	Lsi04G024170
Synteny	Lsi04G024170
Gene Ontology terms	GO:0002181 - cytoplasmic translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR002671 - Ribosomal protein L22e IPR038526 - Ribosomal protein L22e superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004136027.1 60S ribosomal protein L22-2 [Cucumis sativus]

4.1e-17

64.77

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Query:  ISCGAAASGGPKG-KKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT
        +S GAAASGGPKG KKGV F+I C KPVEDKIMDI S EKF L+  KVG KAG    LG+SV VT+DKNKITVN++ NFS   ++  T
Subjt:  ISCGAAASGGPKG-KKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT

XP_022960081.1 60S ribosomal protein L22-2-like [Cucurbita moschata]

2.0e-16

63.64

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Query:  ISCGAAASGGPKG-KKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT
        +S GAAASGGPKG KKG  F+I C KPVEDKIMDI S EKF L+  KVG KAG    LG+SV VT+DKNKITVN++ NFS   ++  T
Subjt:  ISCGAAASGGPKG-KKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT

XP_022991268.1 60S ribosomal protein L22-2-like [Cucurbita maxima]

9.1e-17

63.64

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Query:  ISCGAAASGGPKG-KKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT
        +S GAAASGGPKG KKGV F+I C KPVEDKIMDI S EKF L+  KVG KAG    LG++V VT+DKNKITVN++ NFS   ++  T
Subjt:  ISCGAAASGGPKG-KKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT

XP_023514139.1 60S ribosomal protein L22-2-like [Cucurbita pepo subsp. pepo]

5.9e-16

62.5

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Query:  ISCGAAASGGPKG-KKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT
        +S GAAASGGPKG KKG  F+I C KPVEDKIMDI S EKF L+  KVG KAG     G+SV VT+DKNKITVN++ NFS   ++  T
Subjt:  ISCGAAASGGPKG-KKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT

XP_023548993.1 60S ribosomal protein L22-2-like [Cucurbita pepo subsp. pepo]

9.1e-17

63.64

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Query:  ISCGAAASGGPKG-KKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT
        +S GAAASGGPKG KKGV F+I C KPVEDKIMDI S EKF L+  KVG KAG    LG++V VT+DKNKITVN++ NFS   ++  T
Subjt:  ISCGAAASGGPKG-KKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K637 Uncharacterized protein

2.0e-17

64.77

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Query:  ISCGAAASGGPKG-KKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT
        +S GAAASGGPKG KKGV F+I C KPVEDKIMDI S EKF L+  KVG KAG    LG+SV VT+DKNKITVN++ NFS   ++  T
Subjt:  ISCGAAASGGPKG-KKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT

A0A1S3BRQ9 60S ribosomal protein L22-2

2.0e-17

64.77

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Query:  ISCGAAASGGPKG-KKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT
        +S GAAASGGPKG KKGV F+I C KPVEDKIMDI S EKF L+  KVG KAG    LG+SV VT+DKNKITVN++ NFS   ++  T
Subjt:  ISCGAAASGGPKG-KKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT

A0A5D3D2W6 60S ribosomal protein L22-2-like

2.0e-17

64.77

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Query:  ISCGAAASGGPKG-KKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT
        +S GAAASGGPKG KKGV F+I C KPVEDKIMDI S EKF L+  KVG KAG    LG+SV VT+DKNKITVN++ NFS   ++  T
Subjt:  ISCGAAASGGPKG-KKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT

A0A6J1DLK6 60S ribosomal protein L22-2

2.0e-17

64.77

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Query:  ISCGAAASGGPKG-KKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT
        +S GAAASGGPKG KKGV F+I C KPVEDKIMDI S EKF L+  KVG KAG    LG+SV VT+DKNKITVN++ NFS   ++  T
Subjt:  ISCGAAASGGPKG-KKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT

A0A6J1JVR1 60S ribosomal protein L22-2-like

4.4e-17

63.64

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Query:  ISCGAAASGGPKG-KKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT
        +S GAAASGGPKG KKGV F+I C KPVEDKIMDI S EKF L+  KVG KAG    LG++V VT+DKNKITVN++ NFS   ++  T
Subjt:  ISCGAAASGGPKG-KKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT

SwissProt top hits

e value

%identity

Alignment

P47198 60S ribosomal protein L22

4.9e-05

38.27

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Query:  ASGGPKGKKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT
        A GG K K+ + F + C  PVED IMD  + E+F  +  KV  KAG     G  V + + K+KITV +   FS   ++  T
Subjt:  ASGGPKGKKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT

Q98TF8 60S ribosomal protein L22

3.7e-05

39.02

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Query:  AASGGPKGKKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT
        AA GG K K+ + F + C  PVED IMD  + E+F  +  KV  KAG     G  V + + K+KITV +   FS   ++  T
Subjt:  AASGGPKGKKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT

Q9FE58 60S ribosomal protein L22-3

7.8e-11

49.43

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Query:  ISCGAAASGGPKGKKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT
        +S G AA+   K KKGV+F I C KPV+DKIM+I S EKF  +  KVG KAG    LG+SV++T++K+KITV  +  FS   ++  T
Subjt:  ISCGAAASGGPKGKKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT

Q9M9W1 60S ribosomal protein L22-2

5.9e-11

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Query:  GAAASGGPKGKKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT
        GAA + G   KKGV+F I C KPV+DKIM+I S EKF  +  KVG KAG    LG+SV +T++K+KITV  +  FS   ++  T
Subjt:  GAAASGGPKGKKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT

Q9SRX7 Putative 60S ribosomal protein L22-1

4.5e-11

47.62

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Query:  GAAASGGPKGKKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT
        GA +SG    KKGV+F+I C KPV+D I++I + EKF  +  KV  KAG    LGNSV++T+   KI VN N NFS   ++  T
Subjt:  GAAASGGPKGKKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT

Arabidopsis top hits

e value

%identity

Alignment

AT1G02830.1 Ribosomal L22e protein family

3.2e-12

47.62

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Query:  GAAASGGPKGKKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT
        GA +SG    KKGV+F+I C KPV+D I++I + EKF  +  KV  KAG    LGNSV++T+   KI VN N NFS   ++  T
Subjt:  GAAASGGPKGKKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT

AT3G05560.1 Ribosomal L22e protein family

4.2e-12

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Query:  GAAASGGPKGKKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT
        GAA + G   KKGV+F I C KPV+DKIM+I S EKF  +  KVG KAG    LG+SV +T++K+KITV  +  FS   ++  T
Subjt:  GAAASGGPKGKKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT

AT3G05560.2 Ribosomal L22e protein family

4.2e-12

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Query:  GAAASGGPKGKKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT
        GAA + G   KKGV+F I C KPV+DKIM+I S EKF  +  KVG KAG    LG+SV +T++K+KITV  +  FS   ++  T
Subjt:  GAAASGGPKGKKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT

AT3G05560.3 Ribosomal L22e protein family

4.2e-12

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Query:  GAAASGGPKGKKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT
        GAA + G   KKGV+F I C KPV+DKIM+I S EKF  +  KVG KAG    LG+SV +T++K+KITV  +  FS   ++  T
Subjt:  GAAASGGPKGKKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT

AT5G27770.1 Ribosomal L22e protein family

5.5e-12

49.43

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Query:  ISCGAAASGGPKGKKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT
        +S G AA+   K KKGV+F I C KPV+DKIM+I S EKF  +  KVG KAG    LG+SV++T++K+KITV  +  FS   ++  T
Subjt:  ISCGAAASGGPKGKKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRT

Sequences

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CDS sequence

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ATGCCAATTGTTCCATACAGATGCAAGAGAGTTAGGGACACAAGTTGCAGAGCAGAAGCAAAAATAAGTTGTGGAGCAGCCGCATCTGGTGGCCCAAAGGGGAAGAAGGG
TGTGGCCTTCATCATCGGTTGTGTGAAGCCAGTTGAGGACAAGATCATGGACATCATCTCGTCAGAGAAGTTTTTTCTCAAGGGCAACAAGGTCGGTGACAAAGCTGGGG
TGGCAGCAACACTTGGTAACTCAGTTGCTGTCACTCAGGACAAGAACAAGATCACCGTCAACACCAATAGAAACTTCTCCAATAGCGTCATTCGCAGTAGGACTAGTTGT
AGCGGCCTTTCTCATCTTAAGGCTGTTGAAATTTATATTTCCATACCTTGA

mRNA sequence

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Protein sequence

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MPIVPYRCKRVRDTSCRAEAKISCGAAASGGPKGKKGVAFIIGCVKPVEDKIMDIISSEKFFLKGNKVGDKAGVAATLGNSVAVTQDKNKITVNTNRNFSNSVIRSRTSC
SGLSHLKAVEIYISIP

Lsi04G024170 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome