CuGenDBv2

Gene ID	Lsi04G024300
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	AUGMIN subunit 4
Genome location	chr04:31377335..31380393
RNA-Seq Expression	Lsi04G024300
Synteny	Lsi04G024300
Gene Ontology terms	GO:0051225 - spindle assembly (biological process) GO:0005876 - spindle microtubule (cellular component) GO:0070652 - HAUS complex (cellular component) GO:0051011 - microtubule minus-end binding (molecular function)
InterPro domains	IPR029327 - HAUS augmin-like complex subunit 4

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6607799.1 AUGMIN subunit 4, partial [Cucurbita argyrosperma subsp. sororia]

5.9e-64

92.05

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Query:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT
        VYETLEHRMVVAEASQRLRLPLISKDGEI EEEIEKLS+VSRSSLDSTSTGVTISSS+NSTNYASA+S GSIVNNSLSVSS D AEPGVGGVPNRFLGIT
Subjt:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT

Query:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMDDIGRS
        PAFLWQTQLHQ PS DM EYQMALSREIDARLKIKCDKVADAFVMDDI  S
Subjt:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMDDIGRS

XP_022139359.1 AUGMIN subunit 4 [Momordica charantia]

1.7e-63

90.73

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Query:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT
        VYETLEHRMVVAEASQRLRLP+ISKDGEI EEEIEKLS++SRSSLDSTST VTISSS NSTNYASA+STGSIVNN LSVSSTDTAEPGVGGVPN FLGIT
Subjt:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT

Query:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMDDIGRS
        PAFLWQTQLHQTPS DMTEYQMALSREI+ARLK KCDKVADAFVMDDI  S
Subjt:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMDDIGRS

XP_022940160.1 AUGMIN subunit 4 [Cucurbita moschata]

5.9e-64

92.05

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Query:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT
        VYETLEHRMVVAEASQRLRLPLISKDGEI EEEIEKLS+VSRSSLDSTSTGVTISSS+NSTNYASA+S GSIVNNSLSVSS D AEPGVGGVPNRFLGIT
Subjt:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT

Query:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMDDIGRS
        PAFLWQTQLHQ PS DM EYQMALSREIDARLKIKCDKVADAFVMDDI  S
Subjt:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMDDIGRS

XP_022981474.1 AUGMIN subunit 4 [Cucurbita maxima]

5.9e-64

92.05

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Query:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT
        VYETLEHRMVVAEASQRLRLPLISKDGEI EEEIEKLS+VSRSSLDSTSTGVTISSS+NSTNYASA+S GSIVNNSLSVSS D AEPGVGGVPNRFLGIT
Subjt:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT

Query:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMDDIGRS
        PAFLWQTQLHQ PS DM EYQMALSREIDARLKIKCDKVADAFVMDDI  S
Subjt:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMDDIGRS

XP_031744847.1 AUGMIN subunit 4 [Cucumis sativus]

1.7e-63

92.72

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Query:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT
        VYETLEHRMVVAEASQRLRLPLISKDGEI EEEIEKL   SRSSLDSTSTGVTISSS NSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT
Subjt:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT

Query:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMDDIGRS
        PAFLWQTQLH TPSTDM EYQMALSREIDARLK KCDKVADAF+MDDI  S
Subjt:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMDDIGRS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K3S8 Uncharacterized protein

8.3e-64

92.72

Show/hide

Query:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT
        VYETLEHRMVVAEASQRLRLPLISKDGEI EEEIEKL   SRSSLDSTSTGVTISSS NSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT
Subjt:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT

Query:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMDDIGRS
        PAFLWQTQLH TPSTDM EYQMALSREIDARLK KCDKVADAF+MDDI  S
Subjt:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMDDIGRS

A0A1S3BHI2 AUGMIN subunit 4

2.4e-63

92.05

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Query:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT
        VYETLEHRMVVAEASQRLRLPLISKDGEI EEEIEKL   SRSSLDSTST VTISSS NSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT
Subjt:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT

Query:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMDDIGRS
        PAFLWQTQLHQTPSTDM EYQMALSREID+RLK KCDKVADAF+MDDI  S
Subjt:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMDDIGRS

A0A6J1CCQ9 AUGMIN subunit 4

6.4e-64

91.39

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Query:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT
        VYETLEHRMVVAEASQRLRLPLISKDGEI EEEIEKLS++SRSSLDSTST VTISSS NSTNYASA+STGSIVNN LSVSSTDTAEPGVGGVPN FLGIT
Subjt:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT

Query:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMDDIGRS
        PAFLWQTQLHQTPS DMTEYQMALSREI+ARLK KCDKVADAFVMDDI  S
Subjt:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMDDIGRS

A0A6J1FPS4 AUGMIN subunit 4

2.9e-64

92.05

Show/hide

Query:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT
        VYETLEHRMVVAEASQRLRLPLISKDGEI EEEIEKLS+VSRSSLDSTSTGVTISSS+NSTNYASA+S GSIVNNSLSVSS D AEPGVGGVPNRFLGIT
Subjt:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT

Query:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMDDIGRS
        PAFLWQTQLHQ PS DM EYQMALSREIDARLKIKCDKVADAFVMDDI  S
Subjt:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMDDIGRS

A0A6J1J1Y9 AUGMIN subunit 4

2.9e-64

92.05

Show/hide

Query:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT
        VYETLEHRMVVAEASQRLRLPLISKDGEI EEEIEKLS+VSRSSLDSTSTGVTISSS+NSTNYASA+S GSIVNNSLSVSS D AEPGVGGVPNRFLGIT
Subjt:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT

Query:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMDDIGRS
        PAFLWQTQLHQ PS DM EYQMALSREIDARLKIKCDKVADAFVMDDI  S
Subjt:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMDDIGRS

SwissProt top hits

e value

%identity

Alignment

Q8GYM3 AUGMIN subunit 4

2.0e-38

65.07

Show/hide

Query:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT
        VYETLEHR+VVAEA+Q+LRLPLIS  GEI EEEIEK S++SRSSLDS ST  TISS++NS NYA++S+       SLS   TD     VGGVPNRFLGIT
Subjt:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT

Query:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMD
        PA+L   QL  T S DM +YQM L+REI+ RLK KCDK+ADA V D
Subjt:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMD

Arabidopsis top hits

e value

%identity

Alignment

AT1G50710.1 unknown protein

1.4e-39

65.07

Show/hide

Query:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT
        VYETLEHR+VVAEA+Q+LRLPLIS  GEI EEEIEK S++SRSSLDS ST  TISS++NS NYA++S+       SLS   TD     VGGVPNRFLGIT
Subjt:  VYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGIT

Query:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMD
        PA+L   QL  T S DM +YQM L+REI+ RLK KCDK+ADA V D
Subjt:  PAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMD

Sequences

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CDS sequence

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ATGATGGTTTATGAGACCCTTGAGCATCGAATGGTTGTGGCAGAAGCATCTCAAAGATTGAGGCTTCCTCTTATATCAAAGGACGGTGAAATCCAGGAGGAAGAGATTGA
GAAGTTGAGTGTAGTATCACGAAGTTCCCTTGATAGTACAAGCACCGGTGTCACAATCAGCTCAAGCGCTAATTCAACAAATTATGCAAGTGCTAGCAGTACTGGAAGCA
TTGTGAACAATAGTCTTTCAGTAAGCTCAACTGATACTGCAGAACCTGGAGTAGGTGGTGTTCCCAATCGCTTTCTTGGAATCACACCTGCCTTTTTATGGCAAACACAG
CTCCATCAAACGCCTTCCACGGATATGACCGAATATCAAATGGCTCTTTCCCGCGAAATTGATGCTCGTTTGAAGATTAAATGTGATAAAGTTGCTGATGCTTTTGTGAT
GGATGATATTGGTAGGTCTATCGTTCCTTACCATTTTGTACAATTCTGCAAGCATGTATTATAA

mRNA sequence

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Protein sequence

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MMVYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGITPAFLWQTQ
LHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMDDIGRSIVPYHFVQFCKHVL

Lsi04G024300 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome