; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G024310 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G024310
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionsplicing factor U2af small subunit B-like
Genome locationchr04:31381633..31382457
RNA-Seq ExpressionLsi04G024310
SyntenyLsi04G024310
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0089701 - U2AF (cellular component)
GO:0030628 - pre-mRNA 3'-splice site binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR000571 - Zinc finger, CCCH-type
IPR003954 - RNA recognition motif domain, eukaryote
IPR009145 - U2 auxiliary factor small subunit
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145565.1 splicing factor U2af small subunit B [Cucumis sativus]2.7e-14696.74Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYR SRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKEYDRRERDYGDREYRGNGRSKERQDRDGGRRRHGSPR--RSRSPVSVREGSEERRARIEQWNREREEKQ
        LSPRNRKE+DRRERDY DR+YRGNGRSKER DRDGGRRR GSPR  RSRSPV VREGSEERRARIEQWNREREEKQ
Subjt:  LSPRNRKEYDRRERDYGDREYRGNGRSKERQDRDGGRRRHGSPR--RSRSPVSVREGSEERRARIEQWNREREEKQ

XP_008453027.1 PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo]4.1e-14797.1Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYR SRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKEYDRRERDYGDREYRGNGRSKERQDRDGGRRRHGSPR--RSRSPVSVREGSEERRARIEQWNREREEKQ
        LSPRNRKEYDRRERDY +REYRGNGRSKER DRDGGRRRHGSPR  RSRSPV  REGSEERRARIEQWNREREEKQ
Subjt:  LSPRNRKEYDRRERDYGDREYRGNGRSKERQDRDGGRRRHGSPR--RSRSPVSVREGSEERRARIEQWNREREEKQ

XP_022142994.1 splicing factor U2af small subunit B-like [Momordica charantia]1.1e-14496.01Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKEYDRRERDYGDREYRGNGRSKE---RQDRDGGRRRHGSPRRSRSPVSVREGSEERRARIEQWNREREEK
        LSPRNRK+YDRRERD+ DR++RGNGRSKE   R DRDGGRRRHGSPRRSRSP  VREGSEERRARIEQWNREREEK
Subjt:  LSPRNRKEYDRRERDYGDREYRGNGRSKE---RQDRDGGRRRHGSPRRSRSPVSVREGSEERRARIEQWNREREEK

XP_023525325.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo]1.6e-14395.32Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG R+RGYRRSRSRSR
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR

Query:  SLSPRNRKEYDRRERDYGDREYRGNGRSKERQ---DRDGGRRRHGSPRRSRSPVSVREGSEERRARIEQWNREREEKQ
        SLSPRNRK+YDRRERDY DR++RGNGRSKER    DRDGGRRRHGSPRRSRSP  VREGSEERRARIEQWNREREEKQ
Subjt:  SLSPRNRKEYDRRERDYGDREYRGNGRSKERQ---DRDGGRRRHGSPRRSRSPVSVREGSEERRARIEQWNREREEKQ

XP_038900064.1 splicing factor U2af small subunit B-like [Benincasa hispida]2.3e-15098.54Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKEYDRRERDYGDREYRGNGRSKERQDRDGGRRRHGSPRRSRSPVSVREGSEERRARIEQWNREREEKQ
        LSPRNRKE+DRRERDY DR+YRGNGRSKERQDRDGGRRRHGSPRRSRSPV+VREGSEERRARIEQWNREREEKQ
Subjt:  LSPRNRKEYDRRERDYGDREYRGNGRSKERQDRDGGRRRHGSPRRSRSPVSVREGSEERRARIEQWNREREEKQ

TrEMBL top hitse value%identityAlignment
A0A0A0L4P8 Uncharacterized protein1.3e-14696.74Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYR SRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKEYDRRERDYGDREYRGNGRSKERQDRDGGRRRHGSPR--RSRSPVSVREGSEERRARIEQWNREREEKQ
        LSPRNRKE+DRRERDY DR+YRGNGRSKER DRDGGRRR GSPR  RSRSPV VREGSEERRARIEQWNREREEKQ
Subjt:  LSPRNRKEYDRRERDYGDREYRGNGRSKERQDRDGGRRRHGSPR--RSRSPVSVREGSEERRARIEQWNREREEKQ

A0A1S3BUN6 splicing factor U2af small subunit B-like2.0e-14797.1Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYR SRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKEYDRRERDYGDREYRGNGRSKERQDRDGGRRRHGSPR--RSRSPVSVREGSEERRARIEQWNREREEKQ
        LSPRNRKEYDRRERDY +REYRGNGRSKER DRDGGRRRHGSPR  RSRSPV  REGSEERRARIEQWNREREEKQ
Subjt:  LSPRNRKEYDRRERDYGDREYRGNGRSKERQDRDGGRRRHGSPR--RSRSPVSVREGSEERRARIEQWNREREEKQ

A0A5A7VFL1 Splicing factor U2af small subunit B-like2.0e-14797.1Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYR SRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKEYDRRERDYGDREYRGNGRSKERQDRDGGRRRHGSPR--RSRSPVSVREGSEERRARIEQWNREREEKQ
        LSPRNRKEYDRRERDY +REYRGNGRSKER DRDGGRRRHGSPR  RSRSPV  REGSEERRARIEQWNREREEKQ
Subjt:  LSPRNRKEYDRRERDYGDREYRGNGRSKERQDRDGGRRRHGSPR--RSRSPVSVREGSEERRARIEQWNREREEKQ

A0A6J1CN17 splicing factor U2af small subunit B-like5.4e-14596.01Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKEYDRRERDYGDREYRGNGRSKE---RQDRDGGRRRHGSPRRSRSPVSVREGSEERRARIEQWNREREEK
        LSPRNRK+YDRRERD+ DR++RGNGRSKE   R DRDGGRRRHGSPRRSRSP  VREGSEERRARIEQWNREREEK
Subjt:  LSPRNRKEYDRRERDYGDREYRGNGRSKE---RQDRDGGRRRHGSPRRSRSPVSVREGSEERRARIEQWNREREEK

A0A6J1IV82 splicing factor U2af small subunit B-like7.8e-14495.32Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG R+RGYRRSRSRSR
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR

Query:  SLSPRNRKEYDRRERDYGDREYRGNGRSKE---RQDRDGGRRRHGSPRRSRSPVSVREGSEERRARIEQWNREREEKQ
        SLSPRNRK+YDRRERDY DR++RGNGRSKE   R DRDGGRRRHGSPRRSRSP  VREGSEERRARIEQWNREREEKQ
Subjt:  SLSPRNRKEYDRRERDYGDREYRGNGRSKE---RQDRDGGRRRHGSPRRSRSPVSVREGSEERRARIEQWNREREEKQ

SwissProt top hitse value%identityAlignment
A1A4K8 Splicing factor U2AF 35 kDa subunit7.4e-6753.31Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEEL-GKFGEIESLN
        MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P   +   D     +   ++QEH+++F+E+++ E+  K+GE+E +N
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEEL-GKFGEIESLN

Query:  VCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSR
        VCDNL DH++GNVYV+FR E+ A  A+  L  R+++G+PI A+ SPVTDFREA CRQYE   C RGG+CNFMH+K I ++LRR+L+GR R   RSRSRSR
Subjt:  VCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSR

Query:  SLSPRNRKEYDRRERDYGDREYRGNGRSKERQDRDGGRRRHG
            R+      R+R  G     G GR ++R+ R   R R G
Subjt:  SLSPRNRKEYDRRERDYGDREYRGNGRSKERQDRDGGRRRHG

Q6AUG0 Splicing factor U2af small subunit B5.3e-11372.64Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPT+SPT++L+NMYQRPDMITPGVDAQGQPIDP K+QEHFEDFYEDIYEEL KFGE+E+LNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREE+QA AA  ALQGRFYSGRPII ++SPVTDFREATCRQ+EEN+CNRGGYCNFMHVK IG++LRRKL+G     RRS  RSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNR-----KEYDRRERD---------------------YGDREYRGNG-----RSKERQDR--DGGRRRHGS-PRRSRSPVSVREGSEERRARIEQW
         SPR+R     ++  RRERD                      G   YRG G         R DR  DGGRRRHGS PRR+RSP  VRE SEERRA+IEQW
Subjt:  LSPRNR-----KEYDRRERD---------------------YGDREYRGNG-----RSKERQDR--DGGRRRHGS-PRRSRSPVSVREGSEERRARIEQW

Query:  NREREEK
        NREREEK
Subjt:  NREREEK

Q9FMY5 Splicing factor U2af small subunit B4.9e-12784.34Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS
        CDNLADHMIGNVYV F+EED AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++LRRKLFGRY R YRR SRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS

Query:  RSLSPRNRKEYDR-RER-DYGDREYRGNGR----SKERQDRD-GGRRRHGSPRRSRSPVSVREGSEERRARIEQWNREREE
        RS+SPR ++E+ R RER D  DR+  GNG+      ER DRD GGRRRHGSP+RSRSP +VREGSEERRARIEQWNRER+E
Subjt:  RSLSPRNRKEYDR-RER-DYGDREYRGNGR----SKERQDRD-GGRRRHGSPRRSRSPVSVREGSEERRARIEQWNREREE

Q9S709 Splicing factor U2af small subunit A4.2e-12680.82Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRS
        CDNLADHMIGNVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++LRRKLFGRY R YR   RSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRS

Query:  RSRSLSPRNRKEYDRRE---RDYG----DREYRGNGRSK------ERQDRDGGR-RRHGSPRRSRSPVSVREGSEERRARIEQWNREREEKQ
        RSRS+SPRN+++ DRR+   R++     DRE+  +G  K      ERQ+RDG R RR  SP+R  SP   REGSEERRARIEQWNREREEK+
Subjt:  RSRSLSPRNRKEYDRRE---RDYG----DREYRGNGRSK------ERQDRDGGR-RRHGSPRRSRSPVSVREGSEERRARIEQWNREREEKQ

Q9ZQW8 Splicing factor U2af small subunit A3.5e-10973.38Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN+P++SPTLLLSNMY RPDMITPG+DAQG PIDP KIQ  FEDFYEDI+EEL K+GEIESL+V
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDN ADHMIGNVYVQFREEDQAA ALQAL GR+YSGRPII +FSPV+DFREATCRQYEEN+CNRGGYCNFMHVK IG+DLR++LFG     RRS S  RS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSP---RNRKEYDR----RERDYGD-------REYRGNG-RSKERQ----DRDGGRRRHGSPRRSRSPVSVREGSEERRARIEQWNREREEKQ
         SP     R++YDR    R RD+ D         YRG   RS ER     D DG RRRH S  R+RSP  VR+GSEERRA+IEQWNRERE  Q
Subjt:  LSP---RNRKEYDR----RERDYGD-------REYRGNG-RSKERQ----DRDGGRRRHGSPRRSRSPVSVREGSEERRARIEQWNREREEKQ

Arabidopsis top hitse value%identityAlignment
AT1G10320.1 Zinc finger C-x8-C-x5-C-x3-H type family protein6.5e-3440.72Show/hide
Query:  FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHM
        FGTE+D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P  IT   D +G      + +  +E+FYED++ E  K+GE+ +  VC N + H+
Subjt:  FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHM

Query:  IGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH
         GNVYV +R  + A  A Q++ GR+++G+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H
Subjt:  IGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH

AT1G27650.1 U2 snRNP auxiliary factor small subunit, putative2.9e-12780.82Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRS
        CDNLADHMIGNVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++LRRKLFGRY R YR   RSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRS

Query:  RSRSLSPRNRKEYDRRE---RDYG----DREYRGNGRSK------ERQDRDGGR-RRHGSPRRSRSPVSVREGSEERRARIEQWNREREEKQ
        RSRS+SPRN+++ DRR+   R++     DRE+  +G  K      ERQ+RDG R RR  SP+R  SP   REGSEERRARIEQWNREREEK+
Subjt:  RSRSLSPRNRKEYDRRE---RDYG----DREYRGNGRSK------ERQDRDGGR-RRHGSPRRSRSPVSVREGSEERRARIEQWNREREEKQ

AT1G27650.2 U2 snRNP auxiliary factor small subunit, putative1.5e-9476.86Show/hide
Query:  MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFR
        MYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+CDNLADHMIGNVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFR
Subjt:  MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFR

Query:  EATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRSRSRSLSPRNRKEYDRRE---RDYG----DREYRGNGRSK------ERQDR
        EATCRQYEENNCNRGGYCNFMHVK++ ++LRRKLFGRY R YR   RSRSRSRS+SPRN+++ DRR+   R++     DRE+  +G  K      ERQ+R
Subjt:  EATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRSRSRSLSPRNRKEYDRRE---RDYG----DREYRGNGRSK------ERQDR

Query:  DGGR-RRHGSPRRSRSPVSVREGSEERRARIEQWNREREEKQ
        DG R RR  SP+R  SP   REGSEERRARIEQWNREREEK+
Subjt:  DGGR-RRHGSPRRSRSPVSVREGSEERRARIEQWNREREEKQ

AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein3.5e-12884.34Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS
        CDNLADHMIGNVYV F+EED AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++LRRKLFGRY R YRR SRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS

Query:  RSLSPRNRKEYDR-RER-DYGDREYRGNGR----SKERQDRD-GGRRRHGSPRRSRSPVSVREGSEERRARIEQWNREREE
        RS+SPR ++E+ R RER D  DR+  GNG+      ER DRD GGRRRHGSP+RSRSP +VREGSEERRARIEQWNRER+E
Subjt:  RSLSPRNRKEYDR-RER-DYGDREYRGNGR----SKERQDRD-GGRRRHGSPRRSRSPVSVREGSEERRARIEQWNREREE

AT5G42820.2 Zinc finger C-x8-C-x5-C-x3-H type family protein3.5e-12884.34Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS
        CDNLADHMIGNVYV F+EED AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++LRRKLFGRY R YRR SRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS

Query:  RSLSPRNRKEYDR-RER-DYGDREYRGNGR----SKERQDRD-GGRRRHGSPRRSRSPVSVREGSEERRARIEQWNREREE
        RS+SPR ++E+ R RER D  DR+  GNG+      ER DRD GGRRRHGSP+RSRSP +VREGSEERRARIEQWNRER+E
Subjt:  RSLSPRNRKEYDR-RER-DYGDREYRGNGR----SKERQDRD-GGRRRHGSPRRSRSPVSVREGSEERRARIEQWNREREE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGCTGCTCTCGCCTCCA
CAACCGTCCTACTATTTCCCCCACTCTTCTCCTATCCAACATGTACCAGCGGCCCGACATGATCACCCCCGGCGTTGATGCTCAGGGCCAGCCCATAGATCCCCGAAAGA
TTCAGGAACACTTTGAGGATTTCTATGAAGACATTTACGAGGAACTTGGTAAGTTCGGTGAGATCGAGAGCCTTAATGTCTGTGATAATCTCGCCGACCACATGATTGGC
AATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCTGCAGCACTTCAAGCGTTGCAAGGGCGGTTCTACTCTGGTCGACCCATCATCGCAGATTTTTCTCCGGTGAC
TGATTTCCGGGAAGCGACGTGCCGCCAGTACGAGGAGAATAATTGTAATCGAGGGGGATATTGCAATTTTATGCACGTAAAGATGATTGGGAAGGATTTGAGGAGGAAGC
TGTTCGGTAGGTACCGGGGATATAGGCGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCACGGAACCGGAAAGAGTACGATAGGCGTGAGAGGGATTACGGGGATCGTGAG
TATCGGGGAAACGGGCGGAGCAAGGAGCGTCAGGATAGGGATGGGGGAAGGAGAAGACATGGTAGCCCCAGACGAAGCAGAAGCCCAGTTAGTGTGAGAGAAGGTAGCGA
AGAGCGCCGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAAAAGCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGCTGCTCTCGCCTCCA
CAACCGTCCTACTATTTCCCCCACTCTTCTCCTATCCAACATGTACCAGCGGCCCGACATGATCACCCCCGGCGTTGATGCTCAGGGCCAGCCCATAGATCCCCGAAAGA
TTCAGGAACACTTTGAGGATTTCTATGAAGACATTTACGAGGAACTTGGTAAGTTCGGTGAGATCGAGAGCCTTAATGTCTGTGATAATCTCGCCGACCACATGATTGGC
AATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCTGCAGCACTTCAAGCGTTGCAAGGGCGGTTCTACTCTGGTCGACCCATCATCGCAGATTTTTCTCCGGTGAC
TGATTTCCGGGAAGCGACGTGCCGCCAGTACGAGGAGAATAATTGTAATCGAGGGGGATATTGCAATTTTATGCACGTAAAGATGATTGGGAAGGATTTGAGGAGGAAGC
TGTTCGGTAGGTACCGGGGATATAGGCGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCACGGAACCGGAAAGAGTACGATAGGCGTGAGAGGGATTACGGGGATCGTGAG
TATCGGGGAAACGGGCGGAGCAAGGAGCGTCAGGATAGGGATGGGGGAAGGAGAAGACATGGTAGCCCCAGACGAAGCAGAAGCCCAGTTAGTGTGAGAGAAGGTAGCGA
AGAGCGCCGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAAAAGCAGTGA
Protein sequenceShow/hide protein sequence
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIG
NVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRSLSPRNRKEYDRRERDYGDRE
YRGNGRSKERQDRDGGRRRHGSPRRSRSPVSVREGSEERRARIEQWNREREEKQ