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Lsi04G024330 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G024330
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Genome locationchr04:31387743..31397272
RNA-Seq ExpressionLsi04G024330
SyntenyLsi04G024330
Gene Ontology termsGO:0009765 - photosynthesis, light harvesting (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009522 - photosystem I (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001344 - Chlorophyll A-B binding protein, plant and chromista


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064677.1 chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis melo var. makuwa]2.1e-4094.51Show/hide
Query:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL
        GVLIFSA+PFTAVK+IANSPLG+SLQRQLEKKKKSAVANSSKFKALAEEARK+SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIA L
Subjt:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL

XP_004145567.1 chlorophyll a-b binding protein 7, chloroplastic isoform X1 [Cucumis sativus]1.4e-3994.51Show/hide
Query:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL
        GVLIFSAIPFTAVK+IANSPLG SLQRQLEKKK SAVANSSKFKALAEEARK+SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIA L
Subjt:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL

XP_008453032.2 PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis melo]2.1e-4094.51Show/hide
Query:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL
        GVLIFSA+PFTAVK+IANSPLG+SLQRQLEKKKKSAVANSSKFKALAEEARK+SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIA L
Subjt:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL

XP_008453034.2 PREDICTED: chlorophyll a-b binding protein, chloroplastic isoform X3 [Cucumis melo]2.1e-4094.51Show/hide
Query:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL
        GVLIFSA+PFTAVK+IANSPLG+SLQRQLEKKKKSAVANSSKFKALAEEARK+SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIA L
Subjt:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL

XP_038898449.1 chlorophyll a-b binding protein 7, chloroplastic isoform X1 [Benincasa hispida]6.1e-4093.41Show/hide
Query:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL
        GVLIFSAIPFTAVK+IANSPLG+SLQRQLEKKKKSA+ANSSKFK LAEEARK+SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIA L
Subjt:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL

TrEMBL top hitse value%identityAlignment
A0A1S3BVA0 Chlorophyll a-b binding protein, chloroplastic1.0e-4094.51Show/hide
Query:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL
        GVLIFSA+PFTAVK+IANSPLG+SLQRQLEKKKKSAVANSSKFKALAEEARK+SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIA L
Subjt:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL

A0A1S3BWE1 Chlorophyll a-b binding protein, chloroplastic1.0e-4094.51Show/hide
Query:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL
        GVLIFSA+PFTAVK+IANSPLG+SLQRQLEKKKKSAVANSSKFKALAEEARK+SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIA L
Subjt:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL

A0A5A7VCG1 Chlorophyll a-b binding protein, chloroplastic1.0e-4094.51Show/hide
Query:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL
        GVLIFSA+PFTAVK+IANSPLG+SLQRQLEKKKKSAVANSSKFKALAEEARK+SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIA L
Subjt:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL

A0A6J1CK83 Chlorophyll a-b binding protein, chloroplastic4.7e-3886.81Show/hide
Query:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL
        GVLIFSAIPFTAVK+IANSPLG+SLQRQ+EKKK++A+ANSSKFKALA EARK+SSWYGEERPRWLGP+PY+YPKYLTG+LPGDYGFDIA L
Subjt:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL

A0A6J1FCV0 Chlorophyll a-b binding protein, chloroplastic2.4e-3787.91Show/hide
Query:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL
        GVLIFSAIPFTAVK+IANSP G+SLQRQLEKKK +AVA SSKFKALAE+ARK+SSWYGE+RPRWLGPLPY+YPKYLTGELPGDYGFDIA L
Subjt:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL

SwissProt top hitse value%identityAlignment
P07370 Chlorophyll a-b binding protein 1B, chloroplastic2.2e-0854.17Show/hide
Query:  KALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL
        KA+A+ A   S WYG +R ++LGP   + P YLTGE PGDYG+D A L
Subjt:  KALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL

P10049 Chlorophyll a-b binding protein type I, chloroplastic1.7e-0842.86Show/hide
Query:  SIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL
        S+A   L +  Q +L KK  +A A  +  + +   +  ES WYG +RP++LGP     P YLTGE PGDYG+D AA+
Subjt:  SIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL

P14278 Chlorophyll a-b binding protein 4, chloroplastic2.2e-0861.54Show/hide
Query:  ESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL
        +S WYGE+RP++LGP     P YLTGE PGDYG+D A L
Subjt:  ESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL

P14279 Chlorophyll a-b binding protein 5, chloroplastic (Fragment)2.2e-0861.54Show/hide
Query:  ESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL
        +S WYGE+RP++LGP     P YLTGE PGDYG+D A L
Subjt:  ESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL

Q9C9K1 Chlorophyll a-b binding protein 7, chloroplastic1.1e-3475.82Show/hide
Query:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL
        GVL+FSAIPFTAVK+IANS +G SL+R+LE+KKK AV NSS+FK+ A+EAR +S WYG+ERPRW GP+PYDYP YLTGELPGDYGFDIA L
Subjt:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL

Arabidopsis top hitse value%identityAlignment
AT1G29910.1 chlorophyll A/B binding protein 36.6e-0857.89Show/hide
Query:  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL
        S WYG +R ++LGP   + P YLTGE PGDYG+D A L
Subjt:  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL

AT1G76570.1 Chlorophyll A-B binding family protein7.5e-3675.82Show/hide
Query:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL
        GVL+FSAIPFTAVK+IANS +G SL+R+LE+KKK AV NSS+FK+ A+EAR +S WYG+ERPRW GP+PYDYP YLTGELPGDYGFDIA L
Subjt:  GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL

AT2G05070.1 photosystem II light harvesting complex gene 2.27.8e-0958.97Show/hide
Query:  ESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL
        +S WYG +RP++LGP   + P YLTGE PGDYG+D A L
Subjt:  ESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL

AT2G05100.1 photosystem II light harvesting complex gene 2.17.8e-0958.97Show/hide
Query:  ESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL
        +S WYG +RP++LGP   + P YLTGE PGDYG+D A L
Subjt:  ESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL

AT3G27690.1 photosystem II light harvesting complex gene 2.37.8e-0958.97Show/hide
Query:  ESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL
        +S WYG +RP++LGP   + P YLTGE PGDYG+D A L
Subjt:  ESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGTTCTGATATTCTCTGCAATTCCTTTCACGGCGGTGAAATCCATCGCCAATAGCCCACTTGGAAAGTCGCTCCAGAGACAACTGGAAAAGAAGAAAAAATCTGC
CGTAGCCAACTCTTCGAAGTTCAAGGCTCTTGCTGAGGAGGCTAGAAAAGAGAGCTCATGGTATGGAGAAGAGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATC
CAAAATATCTGACAGGTGAACTGCCTGGTGATTATGGATTTGATATTGCAGCTTTGAAATACTGCATGCTCGTTGGGCTATGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGGTTCTGATATTCTCTGCAATTCCTTTCACGGCGGTGAAATCCATCGCCAATAGCCCACTTGGAAAGTCGCTCCAGAGACAACTGGAAAAGAAGAAAAAATCTGC
CGTAGCCAACTCTTCGAAGTTCAAGGCTCTTGCTGAGGAGGCTAGAAAAGAGAGCTCATGGTATGGAGAAGAGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATC
CAAAATATCTGACAGGTGAACTGCCTGGTGATTATGGATTTGATATTGCAGCTTTGAAATACTGCATGCTCGTTGGGCTATGTTAG
Protein sequenceShow/hide protein sequence
MGVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAALKYCMLVGLC