; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G000950 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G000950
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPhotosystem I P700 chlorophyll a apoprotein A1
Genome locationchr05:1675256..1684201
RNA-Seq ExpressionLsi05G000950
SyntenyLsi05G000950
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009536 - plastid (cellular component)
GO:0009579 - thylakoid (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001280 - Photosystem I PsaA/PsaB
IPR036408 - Photosystem I PsaA/PsaB superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5753185.1 putative photosystem I PsaA/PsaB [Helianthus annuus]1.7e-1963.1Show/hide
Query:  CDGPRRGGYMSSICLGSCLLRAILDVQFNSDSNIPFQLEKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQI
        CDGP RGG MSSI LG CLLR ILD                S++WGS+SDQGVVTHITGG+F QSSITI+GWLR+FLWA  SQ+
Subjt:  CDGPRRGGYMSSICLGSCLLRAILDVQFNSDSNIPFQLEKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQI

KAF5767753.1 putative photosystem I PsaA/PsaB [Helianthus annuus]1.7e-1963.1Show/hide
Query:  CDGPRRGGYMSSICLGSCLLRAILDVQFNSDSNIPFQLEKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQI
        CDGP RGG MSSI LG CLLR ILD                S++WGS+SDQGVVTHITGG+F QSSITI+GWLR+FLWA  SQ+
Subjt:  CDGPRRGGYMSSICLGSCLLRAILDVQFNSDSNIPFQLEKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQI

KAF5767757.1 putative photosystem I PsaA/PsaB [Helianthus annuus]1.7e-1963.1Show/hide
Query:  CDGPRRGGYMSSICLGSCLLRAILDVQFNSDSNIPFQLEKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQI
        CDGP RGG MSSI LG CLLR ILD                S++WGS+SDQGVVTHITGG+F QSSITI+GWLR+FLWA  SQ+
Subjt:  CDGPRRGGYMSSICLGSCLLRAILDVQFNSDSNIPFQLEKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQI

KAF5774572.1 hypothetical protein HanXRQr2_Chr13g0602171 [Helianthus annuus]6.9e-1663.16Show/hide
Query:  CDGPRRGGYMSSICLGSCLLRAILDVQFNSDSNIPFQLEKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNF
        CDGP RGG MSSI LG CLLR ILD                S++WGS+SDQGVVTHITGG+F QSSITI+GWLR+F
Subjt:  CDGPRRGGYMSSICLGSCLLRAILDVQFNSDSNIPFQLEKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNF

KAF5774577.1 hypothetical protein HanXRQr2_Chr13g0602251 [Helianthus annuus]6.9e-1663.16Show/hide
Query:  CDGPRRGGYMSSICLGSCLLRAILDVQFNSDSNIPFQLEKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNF
        CDGP RGG MSSI LG CLLR ILD                S++WGS+SDQGVVTHITGG+F QSSITI+GWLR+F
Subjt:  CDGPRRGGYMSSICLGSCLLRAILDVQFNSDSNIPFQLEKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNF

TrEMBL top hitse value%identityAlignment
A0A1Y3BUT9 Putative photosystem I PsaA/PsaB8.4e-2063.1Show/hide
Query:  CDGPRRGGYMSSICLGSCLLRAILDVQFNSDSNIPFQLEKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQI
        CDGP RGG MSSI LG CLLR ILD                S++WGS+SDQGVVTHITGG+F QSSITI+GWLR+FLWA  SQ+
Subjt:  CDGPRRGGYMSSICLGSCLLRAILDVQFNSDSNIPFQLEKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQI

A0A251SUE3 Putative photosystem I PsaA/PsaB3.3e-1663.16Show/hide
Query:  CDGPRRGGYMSSICLGSCLLRAILDVQFNSDSNIPFQLEKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNF
        CDGP RGG MSSI LG CLLR ILD                S++WGS+SDQGVVTHITGG+F QSSITI+GWLR+F
Subjt:  CDGPRRGGYMSSICLGSCLLRAILDVQFNSDSNIPFQLEKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNF

A0A251SVC4 Putative photosystem I PsaA/PsaB3.3e-1663.16Show/hide
Query:  CDGPRRGGYMSSICLGSCLLRAILDVQFNSDSNIPFQLEKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNF
        CDGP RGG MSSI LG CLLR ILD                S++WGS+SDQGVVTHITGG+F QSSITI+GWLR+F
Subjt:  CDGPRRGGYMSSICLGSCLLRAILDVQFNSDSNIPFQLEKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNF

A0A2G2VN13 Photosystem I chlorophyll a apoprotein A12.2e-1557.47Show/hide
Query:  CDGPRRGGYMSSICLGSCLLRAILDV--QFNSDSNIPFQL--EKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQ
        CDGP RGG    IC  S      L++   +NS S + F    + QS++WGSVSDQGVVTHITGG+F QSSITI+GWLR+FLWA  SQ
Subjt:  CDGPRRGGYMSSICLGSCLLRAILDV--QFNSDSNIPFQL--EKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQ

A0A5J5WZ19 Uncharacterized protein (Fragment)1.6e-1558.23Show/hide
Query:  CDGPRRGGYMSSICLGSCLLRAILDVQFNSDSNIPFQLEKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWA
        CDGPRRG         +C  + ILDVQF+S     F  + +S++WG++SDQGVVTHITGG+F QSSITI+GWLR+FLWA
Subjt:  CDGPRRGGYMSSICLGSCLLRAILDVQFNSDSNIPFQLEKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWA

SwissProt top hitse value%identityAlignment
Q27S50 Photosystem I P700 chlorophyll a apoprotein A12.2e-1755.68Show/hide
Query:  CDGPRRGGYMSSICLGSCLLRAILDV--QFNSDSNIPFQL--EKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQI
        CDGP RGG     C  S      L +   +NS S + F    + QS++WGSVSDQGVVTHITGG+F QSSITI+GWLR+FLWA  SQ+
Subjt:  CDGPRRGGYMSSICLGSCLLRAILDV--QFNSDSNIPFQL--EKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQI

Q2MIA0 Photosystem I P700 chlorophyll a apoprotein A12.2e-1755.68Show/hide
Query:  CDGPRRGGYMSSICLGSCLLRAILDV--QFNSDSNIPFQL--EKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQI
        CDGP RGG     C  S      L +   +NS S + F    + QS++WGSVSDQGVVTHITGG+F QSSITI+GWLR+FLWA  SQ+
Subjt:  CDGPRRGGYMSSICLGSCLLRAILDV--QFNSDSNIPFQL--EKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQI

Q2MII7 Photosystem I P700 chlorophyll a apoprotein A12.2e-1755.68Show/hide
Query:  CDGPRRGGYMSSICLGSCLLRAILDV--QFNSDSNIPFQL--EKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQI
        CDGP RGG     C  S      L +   +NS S + F    + QS++WGSVSDQGVVTHITGG+F QSSITI+GWLR+FLWA  SQ+
Subjt:  CDGPRRGGYMSSICLGSCLLRAILDV--QFNSDSNIPFQL--EKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQI

Q2QD89 Photosystem I P700 chlorophyll a apoprotein A12.2e-1755.68Show/hide
Query:  CDGPRRGGYMSSICLGSCLLRAILDV--QFNSDSNIPFQL--EKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQI
        CDGP RGG     C  S      L +   +NS S + F    + QS++WGSVSDQGVVTHITGG+F QSSITI+GWLR+FLWA  SQ+
Subjt:  CDGPRRGGYMSSICLGSCLLRAILDV--QFNSDSNIPFQL--EKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQI

Q3V534 Photosystem I P700 chlorophyll a apoprotein A12.9e-1754.55Show/hide
Query:  CDGPRRGGYMSSICLGSCLLRAILDV--QFNSDSNIPFQL--EKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQI
        CDGP RGG     C  S      L +   +NS S + F    + QS++WGS+SDQGVVTHITGG+F QSSITI+GWLR+FLWA  SQ+
Subjt:  CDGPRRGGYMSSICLGSCLLRAILDV--QFNSDSNIPFQL--EKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQI

Arabidopsis top hitse value%identityAlignment
ATCG00350.1 Photosystem I, PsaA/PsaB protein4.6e-1853.41Show/hide
Query:  CDGPRRGGYMSSICLGSCLLRAILDV--QFNSDSNIPFQL--EKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQI
        CDGP RGG     C  S      L +   +N+ S + F    + QS++WGS+SDQGVVTHITGG+F QSSITI+GWLR+FLWA  SQ+
Subjt:  CDGPRRGGYMSSICLGSCLLRAILDV--QFNSDSNIPFQL--EKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACTCCATACAAGAGTGAGCCTGTGCACGTGTGCGTGGACATTAGCCTTGGCAATGAGTACAATCCGACTTTCGTCGTCGCCCACACTCATGATCCTTGCATAGC
AGTTTGGCATACACTGCACAGAGAATTTGAGACAGACATGCTGAAACTACTTACTGAATGGTTGATCAACCGTGCTATATTTCCTTTGTCGGTGGCATCGACAACTACTT
CTTCACTGATCTTAAAAAGCTGCCAGAAGTATCACGAGTCAGCAATAGTGATGATGGCATGGCCCCATCACTTTGTGAATAACCGCTTCCTCAACCGTCCTCTAACAACA
AGAAAAAAAATGCTCACATTAATGATGTTCTGGATTTGTGATGGACCCAGAAGAGGGGGGTACATGTCAAGTATCTGCTTGGGATCATGTCTTCTTAGGGCTATTTTGGA
TGTACAATTTAATTCCGATAGTAATATTCCATTTCAGTTGGAAAAGCAGTCAAATATTTGGGGTAGTGTAAGTGATCAAGGGGTAGTAACTCATATTACGGGAGGAGACT
TTGTGCAGAGTTCTATTACTATTAGTGGGTGGCTTCGCAATTTCTTATGGGCACATGAATCCCAGATACCAAGAGCAGGTTCCATTTTCTCATCACTGGCGAAAGAGACT
TCGGGTCTGAACCAAGCACAGGCTACTGTAACACTAAACACACTACTTTCCCCAGCAAAGAATATTACATCTCAAAAAGAGGGGCAAATGAAAATTCAGGACAGAAATAA
TCAGTGCTTCCCAGATCCTGAAAGAACAAAATTACTTAGCGGTGGGAAGATCATAGAGAGAGAAAGAAAGGGAGAGCATAACGGACAAACCTTGAACAGACTTCACCACA
CACAGAAAAGAAACAGAATAATTGTACCAGAAGTCTACAATCCAAACAGTAGGCAACTACTGAATGCAGTTGATGGAGTTTACATTGAATGCCTCTCACATTTTCCTTTG
GGATTCCATCTTCACCAATTACATCAACTGGGAACTTCTCATCTTCAACAACAGTCTCGTGTACGGAGTCCCATTACAAATTCTAGGAGTTTTGAAACTGAATTTCTCCT
TCTTACATTTGAATTCCTCATCGAAACTGTAATCGCGCAAGCTAGTCTTGCCGTCTTTCCTCCAATTCTCAATAACAGAATCGTTAAACCGAGAAGGAAGTACCTGAACC
CGTCCTCTCGAAGTTCTCACAAGCGGCGGTCGTGGGACCTCGGCCGGCCTTTTCGTAGCTTCTCTTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTACTCCATACAAGAGTGAGCCTGTGCACGTGTGCGTGGACATTAGCCTTGGCAATGAGTACAATCCGACTTTCGTCGTCGCCCACACTCATGATCCTTGCATAGC
AGTTTGGCATACACTGCACAGAGAATTTGAGACAGACATGCTGAAACTACTTACTGAATGGTTGATCAACCGTGCTATATTTCCTTTGTCGGTGGCATCGACAACTACTT
CTTCACTGATCTTAAAAAGCTGCCAGAAGTATCACGAGTCAGCAATAGTGATGATGGCATGGCCCCATCACTTTGTGAATAACCGCTTCCTCAACCGTCCTCTAACAACA
AGAAAAAAAATGCTCACATTAATGATGTTCTGGATTTGTGATGGACCCAGAAGAGGGGGGTACATGTCAAGTATCTGCTTGGGATCATGTCTTCTTAGGGCTATTTTGGA
TGTACAATTTAATTCCGATAGTAATATTCCATTTCAGTTGGAAAAGCAGTCAAATATTTGGGGTAGTGTAAGTGATCAAGGGGTAGTAACTCATATTACGGGAGGAGACT
TTGTGCAGAGTTCTATTACTATTAGTGGGTGGCTTCGCAATTTCTTATGGGCACATGAATCCCAGATACCAAGAGCAGGTTCCATTTTCTCATCACTGGCGAAAGAGACT
TCGGGTCTGAACCAAGCACAGGCTACTGTAACACTAAACACACTACTTTCCCCAGCAAAGAATATTACATCTCAAAAAGAGGGGCAAATGAAAATTCAGGACAGAAATAA
TCAGTGCTTCCCAGATCCTGAAAGAACAAAATTACTTAGCGGTGGGAAGATCATAGAGAGAGAAAGAAAGGGAGAGCATAACGGACAAACCTTGAACAGACTTCACCACA
CACAGAAAAGAAACAGAATAATTGTACCAGAAGTCTACAATCCAAACAGTAGGCAACTACTGAATGCAGTTGATGGAGTTTACATTGAATGCCTCTCACATTTTCCTTTG
GGATTCCATCTTCACCAATTACATCAACTGGGAACTTCTCATCTTCAACAACAGTCTCGTGTACGGAGTCCCATTACAAATTCTAGGAGTTTTGAAACTGAATTTCTCCT
TCTTACATTTGAATTCCTCATCGAAACTGTAATCGCGCAAGCTAGTCTTGCCGTCTTTCCTCCAATTCTCAATAACAGAATCGTTAAACCGAGAAGGAAGTACCTGAACC
CGTCCTCTCGAAGTTCTCACAAGCGGCGGTCGTGGGACCTCGGCCGGCCTTTTCGTAGCTTCTCTTGCTAA
Protein sequenceShow/hide protein sequence
MTTPYKSEPVHVCVDISLGNEYNPTFVVAHTHDPCIAVWHTLHREFETDMLKLLTEWLINRAIFPLSVASTTTSSLILKSCQKYHESAIVMMAWPHHFVNNRFLNRPLTT
RKKMLTLMMFWICDGPRRGGYMSSICLGSCLLRAILDVQFNSDSNIPFQLEKQSNIWGSVSDQGVVTHITGGDFVQSSITISGWLRNFLWAHESQIPRAGSIFSSLAKET
SGLNQAQATVTLNTLLSPAKNITSQKEGQMKIQDRNNQCFPDPERTKLLSGGKIIERERKGEHNGQTLNRLHHTQKRNRIIVPEVYNPNSRQLLNAVDGVYIECLSHFPL
GFHLHQLHQLGTSHLQQQSRVRSPITNSRSFETEFLLLTFEFLIETVIAQASLAVFPPILNNRIVKPRRKYLNPSSRSSHKRRSWDLGRPFRSFSC