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Lsi05G001100 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G001100
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionEKC/KEOPS complex, subunit Pcc1
Genome locationchr05:1837521..1839409
RNA-Seq ExpressionLsi05G001100
SyntenyLsi05G001100
Gene Ontology termsGO:0070525 - tRNA threonylcarbamoyladenosine metabolic process (biological process)
GO:0000408 - EKC/KEOPS complex (cellular component)
InterPro domainsIPR015419 - CTAG/Pcc1 family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146228.1 uncharacterized protein LOC101217139 [Cucumis sativus]3.5e-4089.9Show/hide
Query:  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF
        M PTASVAS GE KWEFSCDFEVDYESEKKASIVY AL++DKELQPDKVKR MS SDGKLS HFEAVEARFLRASFSAFVDVLTLATKTIEDFGQE DF
Subjt:  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF
XP_008466840.1 PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo]1.4e-4190.91Show/hide
Query:  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF
        M PTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALI+DKELQPDKVKR MS+S+GKLS HFEAVEARFLRASFS+FVDVLTLATKTIEDFG EV+F
Subjt:  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF
XP_022141079.1 uncharacterized protein LOC111011564 [Momordica charantia]4.2e-4191.84Show/hide
Query:  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVD
        MAPTASVASDGEAKWEF CDFEVDYESEKKASIVYNAL +DKELQPDKVKR M+VSDGKLS HFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ +D
Subjt:  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVD
XP_023553191.1 uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo]6.0e-4088.89Show/hide
Query:  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF
        M PT SVASDGE  WEFSCDFEVDYESEKKASIVY AL++DKELQPDKVKR M+VSDGKLS HFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ VDF
Subjt:  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF
XP_038895564.1 uncharacterized protein LOC120083771 [Benincasa hispida]1.8e-4495.96Show/hide
Query:  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF
        MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALI+DKELQPDKVKR+MSVSDGKLS HFEAVEARFLRASFSAFVDVLTLATKT+EDFGQEVDF
Subjt:  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF
TrEMBL top hitse value%identityAlignment
A0A0A0L7A2 Uncharacterized protein1.7e-4089.9Show/hide
Query:  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF
        M PTASVAS GE KWEFSCDFEVDYESEKKASIVY AL++DKELQPDKVKR MS SDGKLS HFEAVEARFLRASFSAFVDVLTLATKTIEDFGQE DF
Subjt:  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF
A0A1S3CTG0 uncharacterized protein LOC1035041466.9e-4290.91Show/hide
Query:  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF
        M PTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALI+DKELQPDKVKR MS+S+GKLS HFEAVEARFLRASFS+FVDVLTLATKTIEDFG EV+F
Subjt:  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF
A0A5D3CJ23 EKC/KEOPS complex, subunit Pcc16.9e-4290.91Show/hide
Query:  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF
        M PTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALI+DKELQPDKVKR MS+S+GKLS HFEAVEARFLRASFS+FVDVLTLATKTIEDFG EV+F
Subjt:  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF
A0A6J1CHJ5 uncharacterized protein LOC1110115642.0e-4191.84Show/hide
Query:  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVD
        MAPTASVASDGEAKWEF CDFEVDYESEKKASIVYNAL +DKELQPDKVKR M+VSDGKLS HFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ +D
Subjt:  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVD
A0A6J1G2C3 uncharacterized protein LOC1114500288.5e-4086.87Show/hide
Query:  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF
        MAPTASV SDG+AKWEFSCDFEVD ESEKKASIVYNAL++DKELQPDKVKR M+VSDGKLS HFEAVEARFLRAS+SAF+DVLTLA KTIEDFGQ +DF
Subjt:  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G53045.1 unknown protein2.3e-2962.5Show/hide
Query:  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQE
        MA T    +  +  W+FSC+ +V +ESE+ A I Y +L +DKELQPDKV+R+MSVS+ KLS HFEA+EAR LRASFSAFVDVLTLAT+TI++FGQ+
Subjt:  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCGACAGCTTCCGTCGCTTCTGATGGTGAGGCCAAATGGGAATTCAGCTGTGACTTTGAAGTCGATTATGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGC
TTTAATCATCGATAAAGAGTTGCAACCAGACAAGGTGAAAAGGATGATGTCAGTTTCTGATGGAAAACTTTCAACACACTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTG
CATCATTCAGTGCATTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGAAGTGGATTTCTGA
mRNA sequenceShow/hide mRNA sequence
TATTATTTACGAAAGATTTTTTTTTCTTTATATTATTATTTAGGAAAAGGCCGTGCTCTGTTCTATTAGGTTTTTCAGTTGAACTGAAGCGATGGCTCCGACAGCTTCCG
TCGCTTCTGATGGTGAGGCCAAATGGGAATTCAGCTGTGACTTTGAAGTCGATTATGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAATCATCGATAAAGAG
TTGCAACCAGACAAGGTGAAAAGGATGATGTCAGTTTCTGATGGAAAACTTTCAACACACTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTGCATTTGT
AGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGAAGTGGATTTCTGATAGCCTTACTGATCTATTTACATGCCTCTCAAATATCAAGTGTCATTTT
TTTCCTTAAAGTAACTGTGATTTTAATTCACATCTGACCTGTAATTTCATCACAATGTTTTGTTGTTTGATCGAGTGTGAAGGTCTTTCTGCACCCATCATTCGAACATT
GAGATCTAACAAGCAATACACATTCTCCTATATTACTCCTTACATTCAGCCA
Protein sequenceShow/hide protein sequence
MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF