CuGenDBv2

Gene ID	Lsi05G001280
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
Genome location	chr05:1935860..1939446
RNA-Seq Expression	Lsi05G001280
Synteny	Lsi05G001280
Gene Ontology terms	GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR001356 - Homeobox domain IPR009057 - Homeobox-like domain superfamily IPR039276 - Protein SAWADEE HOMEODOMAIN HOMOLOG 1/2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAE8650545.1 hypothetical protein Csa_011086 [Cucumis sativus]

2.7e-55

65.66

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Query:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ
        MGRPPSNGGPAFRFTASE                        VAEMEAILQGHNNTMP+REVLVALA+KF         ESVERKGKIAVQMKQVWNWFQ
Subjt:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ

Query:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW
        NRRYAIRAKT+KAPGKLAVSP+VQIESTPVRNVPQT+VVPAPAPV                              SAKGAPENPLSEFEAKSGRDGAW
Subjt:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW

XP_008456010.1 PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 [Cucumis melo]

2.5e-53

63.64

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Query:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ
        MGRPPSNGGPAFRFTASE                        VAEME ILQGHNNTMP+REVLVALA+KF         ESVERKGKIAVQMKQVWNWFQ
Subjt:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ

Query:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW
        NRRYAIRAKT+KAPGKLAVSP+VQIESTPVRNVPQT+VVPAP PV                              +AK APENPLSEFEAKSGRDGAW
Subjt:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW

XP_022142790.1 protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 [Momordica charantia]

1.9e-53

64.14

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Query:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ
        MGRPPSNGGPAFRFTA+E                        VAEMEAILQGHNNTMP+REVLVALAEKF         ES+ERKGKIAVQMKQVWNWFQ
Subjt:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ

Query:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW
        NRRYAIRAK+TKAPGKLAVSPIVQIESTPVRNVPQ+IVVPAPAPV                              S KGAP+NPLSEFEAKS RDGAW
Subjt:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW

XP_022142791.1 protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 [Momordica charantia]

1.9e-53

64.14

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Query:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ
        MGRPPSNGGPAFRFTA+E                        VAEMEAILQGHNNTMP+REVLVALAEKF         ES+ERKGKIAVQMKQVWNWFQ
Subjt:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ

Query:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW
        NRRYAIRAK+TKAPGKLAVSPIVQIESTPVRNVPQ+IVVPAPAPV                              S KGAP+NPLSEFEAKS RDGAW
Subjt:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW

XP_038878066.1 protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1 [Benincasa hispida]

7.1e-56

67.17

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Query:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ
        MGRPPSNGGPAFRFTASE                        VAEMEAILQGHNNTMP+REVLVALAEKF         ESVERKGKIAVQMKQVWNWFQ
Subjt:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ

Query:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW
        NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAP PV                              SAKGAPENPLSEFEAKSGRDGAW
Subjt:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C274 protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1

1.2e-53

63.64

Show/hide

Query:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ
        MGRPPSNGGPAFRFTASE                        VAEME ILQGHNNTMP+REVLVALA+KF         ESVERKGKIAVQMKQVWNWFQ
Subjt:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ

Query:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW
        NRRYAIRAKT+KAPGKLAVSP+VQIESTPVRNVPQT+VVPAP PV                              +AK APENPLSEFEAKSGRDGAW
Subjt:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW

A0A5A7UUV7 SAWADEE HOMEODOMAIN-like protein 2 isoform X1

1.2e-53

63.64

Show/hide

Query:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ
        MGRPPSNGGPAFRFTASE                        VAEME ILQGHNNTMP+REVLVALA+KF         ESVERKGKIAVQMKQVWNWFQ
Subjt:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ

Query:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW
        NRRYAIRAKT+KAPGKLAVSP+VQIESTPVRNVPQT+VVPAP PV                              +AK APENPLSEFEAKSGRDGAW
Subjt:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW

A0A5D3CH38 Protein SAWADEE HOMEODOMAIN-like protein 2 isoform X1

1.2e-53

63.64

Show/hide

Query:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ
        MGRPPSNGGPAFRFTASE                        VAEME ILQGHNNTMP+REVLVALA+KF         ESVERKGKIAVQMKQVWNWFQ
Subjt:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ

Query:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW
        NRRYAIRAKT+KAPGKLAVSP+VQIESTPVRNVPQT+VVPAP PV                              +AK APENPLSEFEAKSGRDGAW
Subjt:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW

A0A6J1CLX5 protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1

9.3e-54

64.14

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Query:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ
        MGRPPSNGGPAFRFTA+E                        VAEMEAILQGHNNTMP+REVLVALAEKF         ES+ERKGKIAVQMKQVWNWFQ
Subjt:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ

Query:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW
        NRRYAIRAK+TKAPGKLAVSPIVQIESTPVRNVPQ+IVVPAPAPV                              S KGAP+NPLSEFEAKS RDGAW
Subjt:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW

A0A6J1CN90 protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2

9.3e-54

64.14

Show/hide

Query:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ
        MGRPPSNGGPAFRFTA+E                        VAEMEAILQGHNNTMP+REVLVALAEKF         ES+ERKGKIAVQMKQVWNWFQ
Subjt:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ

Query:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW
        NRRYAIRAK+TKAPGKLAVSPIVQIESTPVRNVPQ+IVVPAPAPV                              S KGAP+NPLSEFEAKS RDGAW
Subjt:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW

SwissProt top hits

e value

%identity

Alignment

Q8RWJ7 Protein SAWADEE HOMEODOMAIN HOMOLOG 2

4.5e-29

41.41

Show/hide

Query:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ
        MGRPPSNGGPAFRF   E                        V EMEAIL  HN  MP R +L ALA+KF         ES ERKGK+ VQ KQ+WNWFQ
Subjt:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ

Query:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW
        NRRYA+RA+  KAPGKL VS + +++   + N  ++++ P   P   H        +  + P +      S +    +   +N   EFEAKS RDGAW
Subjt:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW

Arabidopsis top hits

e value

%identity

Alignment

AT3G18380.1 sequence-specific DNA binding transcription factors;sequence-specific DNA binding

3.2e-30

41.41

Show/hide

Query:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ
        MGRPPSNGGPAFRF   E                        V EMEAIL  HN  MP R +L ALA+KF         ES ERKGK+ VQ KQ+WNWFQ
Subjt:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ

Query:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW
        NRRYA+RA+  KAPGKL VS + +++   + N  ++++ P   P   H        +  + P +      S +    +   +N   EFEAKS RDGAW
Subjt:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW

AT3G18380.2 sequence-specific DNA binding transcription factors;sequence-specific DNA binding

3.2e-30

41.41

Show/hide

Query:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ
        MGRPPSNGGPAFRF   E                        V EMEAIL  HN  MP R +L ALA+KF         ES ERKGK+ VQ KQ+WNWFQ
Subjt:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ

Query:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW
        NRRYA+RA+  KAPGKL VS + +++   + N  ++++ P   P   H        +  + P +      S +    +   +N   EFEAKS RDGAW
Subjt:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW

AT3G18380.3 sequence-specific DNA binding transcription factors;sequence-specific DNA binding

7.1e-30

41.92

Show/hide

Query:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ
        MGRPPSNGGPAFRF   E                        V EMEAIL  HN  MP R +L ALA+KF         ES ERKGK+ VQ KQ+WNWFQ
Subjt:  MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQ

Query:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW
        NRRYA+RA+  KAPGKL VS + +++   + N  ++++ P   P   H    +   L    P         S+    +   +N   EFEAKS RDGAW
Subjt:  NRRYAIRAKTTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAW

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGTCGGCCTCCCAGCAATGGAGGCCCTGCCTTCCGCTTCACGGCTTCCGAGGCATCATACTCTCATAGGGTACACTTTCTCAGAACTTCCGGTGATGTAATATTCAA
TTCTTATTTTATCAAGGTCGCGGAGATGGAAGCTATATTGCAAGGACACAATAATACCATGCCATCTCGGGAAGTTCTCGTTGCCCTTGCTGAGAAGTTTAGGTGCGCAT
TGAGCAGTAGCCAACTTGAATCAGTAGAACGGAAAGGGAAGATTGCTGTGCAAATGAAGCAAGTTTGGAATTGGTTCCAGAATAGACGATATGCTATCAGAGCAAAGACA
ACCAAGGCTCCTGGAAAGTTAGCTGTCTCTCCAATTGTCCAAATTGAGTCAACTCCCGTGAGAAATGTGCCTCAAACCATAGTTGTTCCTGCTCCCGCACCAGTAGCTTA
TCATCACAAATCCATCCTAGTAGTAGAATTGTGTTCGTCAAAGCCTCAGGTTTACTGTGTGAGTATTGTTTCTTCAATTGGAAGCTCTGCAAAGGGTGCTCCAGAAAATC
CGTTGTCGGAATTTGAAGCTAAATCTGGGAGGGATGGTGCATGGTTAGTATAG

mRNA sequence

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Protein sequence

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MGRPPSNGGPAFRFTASEASYSHRVHFLRTSGDVIFNSYFIKVAEMEAILQGHNNTMPSREVLVALAEKFRCALSSSQLESVERKGKIAVQMKQVWNWFQNRRYAIRAKT
TKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPAPVAYHHKSILVVELCSSKPQVYCVSIVSSIGSSAKGAPENPLSEFEAKSGRDGAWLV

Lsi05G001280 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome