; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G001640 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G001640
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionFerredoxin
Genome locationchr05:2379460..2379891
RNA-Seq ExpressionLsi05G001640
SyntenyLsi05G001640
Gene Ontology termsGO:0022900 - electron transport chain (biological process)
GO:0000139 - Golgi membrane (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0010008 - endosome membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0009055 - electron transfer activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051537 - 2 iron, 2 sulfur cluster binding (molecular function)
InterPro domainsIPR001041 - 2Fe-2S ferredoxin-type iron-sulfur binding domain
IPR006058 - 2Fe-2S ferredoxin, iron-sulphur binding site
IPR010241 - Ferredoxin [2Fe-2S], plant
IPR012675 - Beta-grasp domain superfamily
IPR036010 - 2Fe-2S ferredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4352271.1 hypothetical protein G4B88_029227 [Cannabis sativa]1.9e-4767.61Show/hide
Query:  ASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGK
        ++ + +TSF+  QP A +LR VPNVG+ LFG  K  SRGGRVTAMA YKVKLITP G+  +ECPD+ Y+LD AE+ GIDLP+SCRAGACS+C+GK+  GK
Subjt:  ASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGK

Query:  VDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS
        VDQSD SFLD+DQ+A+GWVLTC+A PLSDVVIET KEEEF++
Subjt:  VDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS

KAF4357178.1 hypothetical protein F8388_003325 [Cannabis sativa]1.9e-4767.61Show/hide
Query:  ASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGK
        ++ + +TSF+  QP A +LR VPNVG+ LFG  K  SRGGRVTAMA YKVKLITP G+  +ECPD+ Y+LD AE+ GIDLP+SCRAGACS+C+GK+  GK
Subjt:  ASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGK

Query:  VDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS
        VDQSD SFLD+DQ+A+GWVLTC+A PLSDVVIET KEEEF++
Subjt:  VDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS

TYK11179.1 ferredoxin-like [Cucumis melo var. makuwa]6.6e-4871.94Show/hide
Query:  ITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQ
        ITTTSFL  Q    TLR  PNVGE LFGLQK   RG RVTAMATYKVKLITPSG K ++CPD+ YIL+ AE++G+DLP+SCRAGACS+C GKL SGKVDQ
Subjt:  ITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQ

Query:  SDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS
        S+VSFLD+D IA+GWV+ C+A PLSDVVIET KEEEF++
Subjt:  SDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS

XP_008456215.1 PREDICTED: ferredoxin-like [Cucumis melo]2.3e-4871.94Show/hide
Query:  ITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQ
        ITTTSFL  Q    TLR  PNVGE LFGLQK   RG RVTAMATYKVKLITPSG K ++CPD+ YIL+ AE++G+DLP+SCRAGACS+C GKL SGKVDQ
Subjt:  ITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQ

Query:  SDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS
        S++SFLD+DQIA+GWV+ C+A PLSDVVIET KEEEF++
Subjt:  SDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS

XP_022136605.1 ferredoxin-2-like [Momordica charantia]2.7e-4977.61Show/hide
Query:  TSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDV
        TSFL +  P    R V NVGE LFGLQKG SR GRVTAMATYKVKLITPSGEKVV+C D++YILDAAE  G++LP SCRAGACS+CVGKLKSGK+DQSDV
Subjt:  TSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDV

Query:  SFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEF
        SFLDEDQI +GWVLTCLA+P+SDVVIET K EEF
Subjt:  SFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEF

TrEMBL top hitse value%identityAlignment
A0A1S3C2Q0 Ferredoxin1.1e-4871.94Show/hide
Query:  ITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQ
        ITTTSFL  Q    TLR  PNVGE LFGLQK   RG RVTAMATYKVKLITPSG K ++CPD+ YIL+ AE++G+DLP+SCRAGACS+C GKL SGKVDQ
Subjt:  ITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQ

Query:  SDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS
        S++SFLD+DQIA+GWV+ C+A PLSDVVIET KEEEF++
Subjt:  SDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS

A0A5A7TC46 Ferredoxin1.1e-4871.94Show/hide
Query:  ITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQ
        ITTTSFL  Q    TLR  PNVGE LFGLQK   RG RVTAMATYKVKLITPSG K ++CPD+ YIL+ AE++G+DLP+SCRAGACS+C GKL SGKVDQ
Subjt:  ITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQ

Query:  SDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS
        S++SFLD+DQIA+GWV+ C+A PLSDVVIET KEEEF++
Subjt:  SDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS

A0A5D3CLT7 Ferredoxin3.2e-4871.94Show/hide
Query:  ITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQ
        ITTTSFL  Q    TLR  PNVGE LFGLQK   RG RVTAMATYKVKLITPSG K ++CPD+ YIL+ AE++G+DLP+SCRAGACS+C GKL SGKVDQ
Subjt:  ITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQ

Query:  SDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS
        S+VSFLD+D IA+GWV+ C+A PLSDVVIET KEEEF++
Subjt:  SDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS

A0A6J1C4E2 Ferredoxin1.3e-4977.61Show/hide
Query:  TSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDV
        TSFL +  P    R V NVGE LFGLQKG SR GRVTAMATYKVKLITPSGEKVV+C D++YILDAAE  G++LP SCRAGACS+CVGKLKSGK+DQSDV
Subjt:  TSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDV

Query:  SFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEF
        SFLDEDQI +GWVLTCLA+P+SDVVIET K EEF
Subjt:  SFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEF

A0A7J6EFD8 Ferredoxin9.3e-4867.61Show/hide
Query:  ASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGK
        ++ + +TSF+  QP A +LR VPNVG+ LFG  K  SRGGRVTAMA YKVKLITP G+  +ECPD+ Y+LD AE+ GIDLP+SCRAGACS+C+GK+  GK
Subjt:  ASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGK

Query:  VDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS
        VDQSD SFLD+DQ+A+GWVLTC+A PLSDVVIET KEEEF++
Subjt:  VDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS

SwissProt top hitse value%identityAlignment
O04090 Ferredoxin-1, chloroplastic3.3e-4260Show/hide
Query:  MASLITTTSFLWSQPPAATLRLVPNVG-ERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKS
        ++S I +TSFL  Q    +LR +P    + LFGL+   +RGGRVTAMATYKVK ITP GE+ VEC ++ Y+LDAAE  G+DLP+SCRAG+CS+C GK+ S
Subjt:  MASLITTTSFLWSQPPAATLRLVPNVG-ERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKS

Query:  GKVDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEE
        G +DQSD SFLD++Q+++G+VLTC+A P SDVVIET KEE
Subjt:  GKVDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEE

O04683 Ferredoxin-1, chloroplastic2.8e-4161.31Show/hide
Query:  TTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSD
        +T+F    PP  T  L  NVG  LFGL+   SR GRVTAMA YKV L+TP G++ +ECPD+ YILDAAE  GIDLP+SCRAG+CS+C GK+ SG V+Q D
Subjt:  TTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSD

Query:  VSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS
         SFLD+DQI +GWVLTC+A P  DV IET KEEE ++
Subjt:  VSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS

P16972 Ferredoxin-2, chloroplastic3.9e-4361.7Show/hide
Query:  MASLITTTSFLWSQPPAATLRLVPNVG-ERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKS
        ++S I  TSF+   P   +LR +P+   + LFGL+ G +RGGRVTAMATYKVK ITP GE  VEC D+ Y+LDAAE  GIDLP+SCRAG+CS+C GK+ S
Subjt:  MASLITTTSFLWSQPPAATLRLVPNVG-ERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKS

Query:  GKVDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEE
        G VDQSD SFLD++QI +G+VLTC A P SDV IET KEE+
Subjt:  GKVDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEE

Q43517 Ferredoxin-1, chloroplastic2.8e-4158.04Show/hide
Query:  MASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSG
        ++  + +TSFL  +P   +L+ + NVGE LFGL+ G  R GR+T MA+YKVKLITP G    ECPD+ YILD AE +G DLP+SCRAG+CS+C GK+ +G
Subjt:  MASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSG

Query:  KVDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS
         VDQSD +FLDEDQ A G+VLTC+A P  DV IET KEEE ++
Subjt:  KVDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS

Q9ZTS2 Ferredoxin, chloroplastic3.7e-4157.14Show/hide
Query:  MASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSG
        +++ + +TSF+  +P   +L+ +PNVGE LFGL+   + GG+VT MA+YKVKLITP G    +CPDN YILD AE  G DLP+SCRAG+CS+C GK+  G
Subjt:  MASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSG

Query:  KVDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEE
         VDQ+D +FLD+DQ+ +GWVLTC+A P SDV IET KE E
Subjt:  KVDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEE

Arabidopsis top hitse value%identityAlignment
AT1G10960.1 ferredoxin 12.4e-4360Show/hide
Query:  MASLITTTSFLWSQPPAATLRLVPNVG-ERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKS
        ++S I +TSFL  Q    +LR +P    + LFGL+   +RGGRVTAMATYKVK ITP GE+ VEC ++ Y+LDAAE  G+DLP+SCRAG+CS+C GK+ S
Subjt:  MASLITTTSFLWSQPPAATLRLVPNVG-ERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKS

Query:  GKVDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEE
        G +DQSD SFLD++Q+++G+VLTC+A P SDVVIET KEE
Subjt:  GKVDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEE

AT1G32550.1 2Fe-2S ferredoxin-like superfamily protein1.1e-1339.74Show/hide
Query:  ECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEE
        E P+++YIL +AE+  I LPF+CR G C++C  ++KSG++ Q     +  +  +QG+ L C+  P SD+ +ET  E+E
Subjt:  ECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEE

AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein2.8e-4461.7Show/hide
Query:  MASLITTTSFLWSQPPAATLRLVPNVG-ERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKS
        ++S I  TSF+   P   +LR +P+   + LFGL+ G +RGGRVTAMATYKVK ITP GE  VEC D+ Y+LDAAE  GIDLP+SCRAG+CS+C GK+ S
Subjt:  MASLITTTSFLWSQPPAATLRLVPNVG-ERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKS

Query:  GKVDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEE
        G VDQSD SFLD++QI +G+VLTC A P SDV IET KEE+
Subjt:  GKVDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEE

AT2G27510.1 ferredoxin 34.3e-2956.64Show/hide
Query:  RLFGLQKGGSRGGRVTAMATYKVKLITPSG-EKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLTCLATP
        R FGL+   + GG  T  A YKVKL+ P G E   E  D++YILDAAE  G+DLP+SCRAGACS C G++ SG VDQSD SFL++  + +G+VLTC+A P
Subjt:  RLFGLQKGGSRGGRVTAMATYKVKLITPSG-EKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLTCLATP

Query:  LSDVVIETDKEEE
         SD VI T KE E
Subjt:  LSDVVIETDKEEE

AT5G10000.1 ferredoxin 41.3e-2550.45Show/hide
Query:  FGLQKGGSRGGRVTAMATYKVKLITPSG-EKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLTCLATPLS
        FGL       G+V A  + KVKLI+P G E+ +E  ++  IL++AEN G++LP+SCR+G C  C GKL SGKVDQS  SFL+E+QI +G++LTC+A PL 
Subjt:  FGLQKGGSRGGRVTAMATYKVKLITPSG-EKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLTCLATPLS

Query:  DVVIETDKEEE
        D V+ T K+ +
Subjt:  DVVIETDKEEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAGCCTCATCACCACCACTTCCTTCCTCTGGTCCCAGCCACCGGCCGCGACGTTGAGGCTGGTGCCTAATGTGGGTGAGCGCTTGTTCGGGTTGCAGAAGGGAGG
GAGCCGAGGCGGGCGAGTGACGGCGATGGCAACATACAAGGTGAAGCTAATAACACCAAGTGGAGAGAAAGTTGTCGAGTGTCCGGATAACGAGTACATTCTAGATGCGG
CGGAGAACGATGGGATCGACCTTCCATTCTCATGTAGAGCAGGAGCATGTTCTGCTTGTGTAGGAAAATTGAAATCAGGGAAAGTGGATCAGTCAGATGTTAGCTTCCTT
GATGAAGATCAGATTGCACAAGGCTGGGTTCTTACTTGTTTGGCTACTCCTCTCTCTGATGTTGTTATTGAGACAGATAAGGAGGAGGAATTTTCAAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAGCCTCATCACCACCACTTCCTTCCTCTGGTCCCAGCCACCGGCCGCGACGTTGAGGCTGGTGCCTAATGTGGGTGAGCGCTTGTTCGGGTTGCAGAAGGGAGG
GAGCCGAGGCGGGCGAGTGACGGCGATGGCAACATACAAGGTGAAGCTAATAACACCAAGTGGAGAGAAAGTTGTCGAGTGTCCGGATAACGAGTACATTCTAGATGCGG
CGGAGAACGATGGGATCGACCTTCCATTCTCATGTAGAGCAGGAGCATGTTCTGCTTGTGTAGGAAAATTGAAATCAGGGAAAGTGGATCAGTCAGATGTTAGCTTCCTT
GATGAAGATCAGATTGCACAAGGCTGGGTTCTTACTTGTTTGGCTACTCCTCTCTCTGATGTTGTTATTGAGACAGATAAGGAGGAGGAATTTTCAAGTTAA
Protein sequenceShow/hide protein sequence
MASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFL
DEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS