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Lsi05G001650 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G001650
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionFerredoxin
Genome locationchr05:2380884..2381677
RNA-Seq ExpressionLsi05G001650
SyntenyLsi05G001650
Gene Ontology termsGO:0022900 - electron transport chain (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0012505 - endomembrane system (cellular component)
GO:0098588 - bounding membrane of organelle (cellular component)
GO:0009055 - electron transfer activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051537 - 2 iron, 2 sulfur cluster binding (molecular function)
InterPro domainsIPR001041 - 2Fe-2S ferredoxin-type iron-sulfur binding domain
IPR006058 - 2Fe-2S ferredoxin, iron-sulphur binding site
IPR010241 - Ferredoxin [2Fe-2S], plant
IPR012675 - Beta-grasp domain superfamily
IPR036010 - 2Fe-2S ferredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146259.1 ferredoxin, leaf L-A [Cucumis sativus]3.7e-4673.6Show/hide
Query:  MGSTTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCI
        M STTA+T+PFPATSF+RRNP GGVS +PF N+G+SL+GLKH   RGGR+   AYKV LITPDGEK++ C  D YILDAAEE+GLDLPYSCRAGACSSC+
Subjt:  MGSTTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCI

Query:  GKVKSGKLDQSDNSFLDDDQMADGF
        GKV SGKLDQSD SFLDD+Q+A+G+
Subjt:  GKVKSGKLDQSDNSFLDDDQMADGF

XP_008456052.1 PREDICTED: ferredoxin-like [Cucumis melo]6.5e-5182.4Show/hide
Query:  MGSTTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCI
        MGSTTA T+PFPATSFLRRNP GGVSL+PF N+G+SLFGLKH   RGGRVTAMAY V LITP+GEKSITC  D YILDAAEENG+DLPYSCRAGACSSCI
Subjt:  MGSTTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCI

Query:  GKVKSGKLDQSDNSFLDDDQMADGF
        GKV SGKLDQSD SFLDDDQ+A+G+
Subjt:  GKVKSGKLDQSDNSFLDDDQMADGF

XP_022136604.1 ferredoxin-like [Momordica charantia]1.7e-4675.37Show/hide
Query:  MGSTTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCI
        MGSTTAL+ P PATSFLR  PA G  LRPF N+GQ +FGLK GGSRGGRV AMAYKVTLITP GEKS+ C  D YILDAAEE+GLDLPYSCRAGACSSC+
Subjt:  MGSTTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCI

Query:  GKVKSGKLDQSDNSFLDDDQMADGFPWYPFCFLF
        GKV SGK+DQSDNSFLDDDQMA+G  W   C  +
Subjt:  GKVKSGKLDQSDNSFLDDDQMADGFPWYPFCFLF

XP_022941964.1 ferredoxin-like [Cucurbita moschata]5.5e-5081.75Show/hide
Query:  MGSTTALTAPFPATSFLRR-NPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSC
        MGSTTALTAP P TSFLRR  P  GVSLRPF NVGQSLFGLK G SRGG +T MAYKV LITP+GEK I CSGDDYILDAAEE+G+DLPYSCRAGACSSC
Subjt:  MGSTTALTAPFPATSFLRR-NPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSC

Query:  IGKVKSGKLDQSDNSFLDDDQMADGF
        IGK+KSGK+DQSDNSFLDD QM DG+
Subjt:  IGKVKSGKLDQSDNSFLDDDQMADGF

XP_038905955.1 ferredoxin-like [Benincasa hispida]9.8e-5586.4Show/hide
Query:  MGSTTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCI
        MGSTTA TAPFPA SFLRRNPAGGVSL+PF NVGQSLFGLKHG SRGGRVTAMAY +TLITP+GEKSITC+ D YILDAAEE GLDLPYSCRAGACSSC+
Subjt:  MGSTTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCI

Query:  GKVKSGKLDQSDNSFLDDDQMADGF
        GKV SG LDQSDNSFLDDDQMA G+
Subjt:  GKVKSGKLDQSDNSFLDDDQMADGF

TrEMBL top hitse value%identityAlignment
A0A1S3C1X0 Ferredoxin3.2e-5182.4Show/hide
Query:  MGSTTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCI
        MGSTTA T+PFPATSFLRRNP GGVSL+PF N+G+SLFGLKH   RGGRVTAMAY V LITP+GEKSITC  D YILDAAEENG+DLPYSCRAGACSSCI
Subjt:  MGSTTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCI

Query:  GKVKSGKLDQSDNSFLDDDQMADGF
        GKV SGKLDQSD SFLDDDQ+A+G+
Subjt:  GKVKSGKLDQSDNSFLDDDQMADGF

A0A5A7TBH5 Ferredoxin3.2e-5182.4Show/hide
Query:  MGSTTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCI
        MGSTTA T+PFPATSFLRRNP GGVSL+PF N+G+SLFGLKH   RGGRVTAMAY V LITP+GEKSITC  D YILDAAEENG+DLPYSCRAGACSSCI
Subjt:  MGSTTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCI

Query:  GKVKSGKLDQSDNSFLDDDQMADGF
        GKV SGKLDQSD SFLDDDQ+A+G+
Subjt:  GKVKSGKLDQSDNSFLDDDQMADGF

A0A6J1C4S7 Ferredoxin8.1e-4775.37Show/hide
Query:  MGSTTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCI
        MGSTTAL+ P PATSFLR  PA G  LRPF N+GQ +FGLK GGSRGGRV AMAYKVTLITP GEKS+ C  D YILDAAEE+GLDLPYSCRAGACSSC+
Subjt:  MGSTTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCI

Query:  GKVKSGKLDQSDNSFLDDDQMADGFPWYPFCFLF
        GKV SGK+DQSDNSFLDDDQMA+G  W   C  +
Subjt:  GKVKSGKLDQSDNSFLDDDQMADGFPWYPFCFLF

A0A6J1FPZ2 Ferredoxin2.7e-5081.75Show/hide
Query:  MGSTTALTAPFPATSFLRR-NPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSC
        MGSTTALTAP P TSFLRR  P  GVSLRPF NVGQSLFGLK G SRGG +T MAYKV LITP+GEK I CSGDDYILDAAEE+G+DLPYSCRAGACSSC
Subjt:  MGSTTALTAPFPATSFLRR-NPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSC

Query:  IGKVKSGKLDQSDNSFLDDDQMADGF
        IGK+KSGK+DQSDNSFLDD QM DG+
Subjt:  IGKVKSGKLDQSDNSFLDDDQMADGF

A0A6J1J1D5 Ferredoxin2.7e-5081.75Show/hide
Query:  MGSTTALTAPFPATSFLRR-NPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSC
        MGSTTALTAP P TSFLRR  P  GVSLRPF NVGQSLFGLK G SRGG +T MAYKV LITP+GEK I CSGDDYILDAAEE+G+DLPYSCRAGACSSC
Subjt:  MGSTTALTAPFPATSFLRR-NPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSC

Query:  IGKVKSGKLDQSDNSFLDDDQMADGF
        IGK+KSGK+DQSDNSFLDD QM DG+
Subjt:  IGKVKSGKLDQSDNSFLDDDQMADGF

SwissProt top hitse value%identityAlignment
O04090 Ferredoxin-1, chloroplastic3.6e-3664.29Show/hide
Query:  STTALTAPFPATSFLRRNPAGGVSLR--PFANVGQSLFGLKHGGSRGGRVTAMA-YKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSC
        ++TAL++   +TSFLRR     +SLR  PFAN  QSLFGLK   +RGGRVTAMA YKV  ITP+GE+ + C  D Y+LDAAEE GLDLPYSCRAG+CSSC
Subjt:  STTALTAPFPATSFLRRNPAGGVSLR--PFANVGQSLFGLKHGGSRGGRVTAMA-YKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSC

Query:  IGKVKSGKLDQSDNSFLDDDQMADGF
         GKV SG +DQSD SFLDD+QM++G+
Subjt:  IGKVKSGKLDQSDNSFLDDDQMADGF

O04683 Ferredoxin-1, chloroplastic1.0e-3054.89Show/hide
Query:  STTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAM-AYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIG
        +T AL+    +T+F  + P    +L    NVG++LFGLK   SR GRVTAM AYKVTL+TP+G++ + C  D YILDAAEE G+DLPYSCRAG+CSSC G
Subjt:  STTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAM-AYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIG

Query:  KVKSGKLDQSDNSFLDDDQMADGFPWYPFCFLF
        KV SG ++Q D SFLDDDQ+ +G  W   C  +
Subjt:  KVKSGKLDQSDNSFLDDDQMADGFPWYPFCFLF

P00221 Ferredoxin-1, chloroplastic1.3e-3056.1Show/hide
Query:  STTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGK
        + T  T    AT+F+ +  A  +     +N G+SLFGLK  GSRGGR+T  AYKVTL+TP G     C  D YILDAAEE G+DLPYSCRAG+CSSC GK
Subjt:  STTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGK

Query:  VKSGKLDQSDNSFLDDDQMADGF
        +K+G L+Q D SFLDDDQ+ +G+
Subjt:  VKSGKLDQSDNSFLDDDQMADGF

P16972 Ferredoxin-2, chloroplastic2.8e-3664.29Show/hide
Query:  STTALTAPFPATSFLRRNPAGGVSLR--PFANVGQSLFGLKHGGSRGGRVTAMA-YKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSC
        ++TAL++    TSF+RR+PA  +SLR  P AN  QSLFGLK G +RGGRVTAMA YKV  ITP+GE  + C  D Y+LDAAEE G+DLPYSCRAG+CSSC
Subjt:  STTALTAPFPATSFLRRNPAGGVSLR--PFANVGQSLFGLKHGGSRGGRVTAMA-YKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSC

Query:  IGKVKSGKLDQSDNSFLDDDQMADGF
         GKV SG +DQSD SFLDD+Q+ +GF
Subjt:  IGKVKSGKLDQSDNSFLDDDQMADGF

Q43517 Ferredoxin-1, chloroplastic1.7e-3062.28Show/hide
Query:  ATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMA-YKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQS
        +TSFL R PA   SL+  +NVG++LFGLK G  R GR+T MA YKV LITP+G     C  D YILD AEE G DLPYSCRAG+CSSC GKV +G +DQS
Subjt:  ATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMA-YKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQS

Query:  DNSFLDDDQMADGF
        D +FLD+DQ A GF
Subjt:  DNSFLDDDQMADGF

Arabidopsis top hitse value%identityAlignment
AT1G10960.1 ferredoxin 12.6e-3764.29Show/hide
Query:  STTALTAPFPATSFLRRNPAGGVSLR--PFANVGQSLFGLKHGGSRGGRVTAMA-YKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSC
        ++TAL++   +TSFLRR     +SLR  PFAN  QSLFGLK   +RGGRVTAMA YKV  ITP+GE+ + C  D Y+LDAAEE GLDLPYSCRAG+CSSC
Subjt:  STTALTAPFPATSFLRRNPAGGVSLR--PFANVGQSLFGLKHGGSRGGRVTAMA-YKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSC

Query:  IGKVKSGKLDQSDNSFLDDDQMADGF
         GKV SG +DQSD SFLDD+QM++G+
Subjt:  IGKVKSGKLDQSDNSFLDDDQMADGF

AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein2.0e-3764.29Show/hide
Query:  STTALTAPFPATSFLRRNPAGGVSLR--PFANVGQSLFGLKHGGSRGGRVTAMA-YKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSC
        ++TAL++    TSF+RR+PA  +SLR  P AN  QSLFGLK G +RGGRVTAMA YKV  ITP+GE  + C  D Y+LDAAEE G+DLPYSCRAG+CSSC
Subjt:  STTALTAPFPATSFLRRNPAGGVSLR--PFANVGQSLFGLKHGGSRGGRVTAMA-YKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSC

Query:  IGKVKSGKLDQSDNSFLDDDQMADGF
         GKV SG +DQSD SFLDD+Q+ +GF
Subjt:  IGKVKSGKLDQSDNSFLDDDQMADGF

AT2G27510.1 ferredoxin 31.4e-2248.67Show/hide
Query:  TSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDG-EKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSD
        T+ L  N +  +S+     V +S FGLK   + GG   +  YKV L+ PDG E       D YILDAAEE G+DLPYSCRAGACS+C G++ SG +DQSD
Subjt:  TSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDG-EKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSD

Query:  NSFLDDDQMADGF
         SFL+D  +  G+
Subjt:  NSFLDDDQMADGF

AT4G14890.1 2Fe-2S ferredoxin-like superfamily protein1.5e-0830.89Show/hide
Query:  STTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGK
        ST +L  P+ + SF            P  N   S    +      GR+ A AYKV +        +    D+ IL  A ++GLD+PY C  G C +C  K
Subjt:  STTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGK

Query:  VKSGKLDQSDNSFLDDDQMADGF
        + +G +DQS    L DD +  G+
Subjt:  VKSGKLDQSDNSFLDDDQMADGF

AT5G10000.1 ferredoxin 41.2e-1547.78Show/hide
Query:  FGLKHGGSRGGRVTAM-AYKVTLITPDG-EKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSDNSFLDDDQMADGF
        FGL       G+V A  + KV LI+P+G E+ I  + D  IL++AE  GL+LPYSCR+G C +C GK+ SGK+DQS  SFL+++Q+  G+
Subjt:  FGLKHGGSRGGRVTAM-AYKVTLITPDG-EKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSDNSFLDDDQMADGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAGCACCACCGCACTCACCGCCCCTTTTCCGGCCACCTCCTTCCTCCGGCGGAATCCGGCTGGAGGAGTGAGCCTAAGGCCATTTGCCAACGTGGGTCAGTCTCT
GTTCGGGCTGAAACACGGCGGTAGCCGCGGCGGACGAGTGACGGCGATGGCCTACAAGGTGACCCTCATAACCCCAGATGGAGAGAAATCGATTACATGTAGTGGTGATG
ATTACATTTTAGATGCGGCTGAGGAAAACGGGCTTGATCTTCCTTACTCTTGCAGAGCTGGGGCTTGTTCTTCTTGCATTGGCAAAGTGAAATCAGGGAAATTAGATCAA
TCTGATAATAGTTTTCTTGATGATGATCAAATGGCTGATGGCTTCCCTTGGTATCCGTTTTGTTTTTTGTTTGGTTCATTTTCATTTCCTTTTGGCTTAAGATGTGAATG
A
mRNA sequenceShow/hide mRNA sequence
ATGGGCAGCACCACCGCACTCACCGCCCCTTTTCCGGCCACCTCCTTCCTCCGGCGGAATCCGGCTGGAGGAGTGAGCCTAAGGCCATTTGCCAACGTGGGTCAGTCTCT
GTTCGGGCTGAAACACGGCGGTAGCCGCGGCGGACGAGTGACGGCGATGGCCTACAAGGTGACCCTCATAACCCCAGATGGAGAGAAATCGATTACATGTAGTGGTGATG
ATTACATTTTAGATGCGGCTGAGGAAAACGGGCTTGATCTTCCTTACTCTTGCAGAGCTGGGGCTTGTTCTTCTTGCATTGGCAAAGTGAAATCAGGGAAATTAGATCAA
TCTGATAATAGTTTTCTTGATGATGATCAAATGGCTGATGGCTTCCCTTGGTATCCGTTTTGTTTTTTGTTTGGTTCATTTTCATTTCCTTTTGGCTTAAGATGTGAATG
A
Protein sequenceShow/hide protein sequence
MGSTTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQ
SDNSFLDDDQMADGFPWYPFCFLFGSFSFPFGLRCE