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Lsi05G001720 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G001720
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSerine hydroxymethyltransferase
Genome locationchr05:2428568..2429875
RNA-Seq ExpressionLsi05G001720
SyntenyLsi05G001720
Gene Ontology termsGO:0006565 - L-serine catabolic process (biological process)
GO:0019264 - glycine biosynthetic process from serine (biological process)
GO:0032259 - methylation (biological process)
GO:0035999 - tetrahydrofolate interconversion (biological process)
GO:0046655 - folic acid metabolic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0004372 - glycine hydroxymethyltransferase activity (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0030170 - pyridoxal phosphate binding (molecular function)
GO:0070905 - serine binding (molecular function)
InterPro domainsIPR001085 - Serine hydroxymethyltransferase
IPR015422 - Pyridoxal phosphate-dependent transferase, small domain
IPR015424 - Pyridoxal phosphate-dependent transferase
IPR039429 - Serine hydroxymethyltransferase-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576983.1 Serine hydroxymethyltransferase 7, partial [Cucurbita argyrosperma subsp. sororia]1.2e-4787.27Show/hide
Query:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS
        + GKN EQ+CEMCHITLNKI IFGDNGIIT GGVRIGTPAMTSRGCLESDFEVIVEFLH AAQIAI +QRE+GKLP AFL GLQSNNEVVELGYRV SFS
Subjt:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS

Query:  AKFAMPGVET
        AKFAMPG+ET
Subjt:  AKFAMPGVET

XP_004146284.1 serine hydroxymethyltransferase 7 [Cucumis sativus]6.9e-5193.52Show/hide
Query:  GKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAK
        GKNLEQLCEMCHITLNKIII GDNG+ITTGGVRIGTPAMTSRGCLESDFE+IVEFLHTAAQIAICIQREYGK+PNAFLTGLQSN EVVELG RVESFSAK
Subjt:  GKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAK

Query:  FAMPGVET
        F+MPGVET
Subjt:  FAMPGVET

XP_008456065.1 PREDICTED: serine hydroxymethyltransferase 7-like isoform X1 [Cucumis melo]8.2e-5294.44Show/hide
Query:  GKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAK
        GKNLEQLCEMCHITLNKIIIFGDNG+ITTGGVRIGTPAMTSRGCLESDFE+IVEFLHTAAQIAICIQREYGK+PNAFLTG+QSN EVVELG RVESFSAK
Subjt:  GKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAK

Query:  FAMPGVET
        FAMPGVET
Subjt:  FAMPGVET

XP_023552257.1 serine hydroxymethyltransferase 7-like [Cucurbita pepo subsp. pepo]1.2e-4787.27Show/hide
Query:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS
        + GKN EQ+CEMCHITLNKI IFGDNGIIT GGVRIGTPAMTSRGCLESDFEVIVEFLH AAQIAI +QRE+GKLP AFL GLQSNNEVVELGYRV SFS
Subjt:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS

Query:  AKFAMPGVET
        AKFAMPG+ET
Subjt:  AKFAMPGVET

XP_038905954.1 serine hydroxymethyltransferase 7-like [Benincasa hispida]9.0e-5193.52Show/hide
Query:  GKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAK
        GKNLEQLCEMCHITLNKIIIFGDNG+ITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQ++YGKLP AFLTGLQSNNEVVEL +RVESFSAK
Subjt:  GKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAK

Query:  FAMPGVET
        FAMPG ET
Subjt:  FAMPGVET

TrEMBL top hitse value%identityAlignment
A0A0A0LAD1 Serine hydroxymethyltransferase3.3e-5193.52Show/hide
Query:  GKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAK
        GKNLEQLCEMCHITLNKIII GDNG+ITTGGVRIGTPAMTSRGCLESDFE+IVEFLHTAAQIAICIQREYGK+PNAFLTGLQSN EVVELG RVESFSAK
Subjt:  GKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAK

Query:  FAMPGVET
        F+MPGVET
Subjt:  FAMPGVET

A0A1S3C2G6 Serine hydroxymethyltransferase4.0e-5294.44Show/hide
Query:  GKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAK
        GKNLEQLCEMCHITLNKIIIFGDNG+ITTGGVRIGTPAMTSRGCLESDFE+IVEFLHTAAQIAICIQREYGK+PNAFLTG+QSN EVVELG RVESFSAK
Subjt:  GKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAK

Query:  FAMPGVET
        FAMPGVET
Subjt:  FAMPGVET

A0A6J1E9K3 Serine hydroxymethyltransferase1.7e-4787.27Show/hide
Query:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS
        + GKN EQ+CEMCHITLNKI IFGDNGIIT GGVRIGTPAMTSRGCLESDFEVIVEFLH AAQIAI +QRE GKLP AFL GLQSNNEVVELGYRV SFS
Subjt:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS

Query:  AKFAMPGVET
        AKFAMPG+ET
Subjt:  AKFAMPGVET

A0A6J1IXT5 Serine hydroxymethyltransferase8.3e-4277.98Show/hide
Query:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS
        + GKN E +CE+CHITLNKI IFGDNGII  GGVR+GTPAMTSRGCLESDFE I +FLHTAAQIAI +QREYGKLP  +L GL SNNEVVEL  RVESFS
Subjt:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS

Query:  AKFAMPGVE
        A+FAMPG E
Subjt:  AKFAMPGVE

A0A6J1JAX6 Serine hydroxymethyltransferase1.1e-4684.55Show/hide
Query:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS
        + GKN EQ+CEMCHITLNKI IFGDNGIIT GGVRIGTPAMTSRGCLESDFEVIVEFLH AAQIA+ +QRE+GKLP  FL GLQS+NEVVELGYRV SFS
Subjt:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS

Query:  AKFAMPGVET
        AKFAMPG+ET
Subjt:  AKFAMPGVET

SwissProt top hitse value%identityAlignment
O23254 Serine hydroxymethyltransferase 42.0e-2450.47Show/hide
Query:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS
        + G  +E+LC++C ITLNK  +FGD+  +  GGVRIG PAMTSRG +E DFE I EFL  A  + + IQ+ YGKL   F  GL +N ++ +L   VE FS
Subjt:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS

Query:  AKFAMPG
        A + MPG
Subjt:  AKFAMPG

Q54EW1 Serine hydroxymethyltransferase 21.5e-1941.12Show/hide
Query:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS
        I G  +E+ C+  HIT+NK  ++GD   I  GGVR+G PA+TSRG  E DF  +V+FL    +I++ IQ + GK    F   +  N ++ ++   V+ FS
Subjt:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS

Query:  AKFAMPG
         KF MPG
Subjt:  AKFAMPG

Q84WV0 Serine hydroxymethyltransferase 71.8e-3057.41Show/hide
Query:  MVIVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVES
        M + GK  E++CEMCHITLNK  IFGDNG I+ GGVRIGTPAMT+RGC+ESDFE + +FL  AAQI   +QRE+GK    F+  L +N ++ EL  RVE+
Subjt:  MVIVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVES

Query:  FSAKFAMP
        F+ ++ MP
Subjt:  FSAKFAMP

Q9LM59 Serine hydroxymethyltransferase 64.5e-2953.21Show/hide
Query:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS
        + GK  E++CEMCHIT+NK+ IF +NG+I+ GGVRIG+PAMTSRGCLE +FE + +FL+ AAQIA   QRE+GKL    L  +    E+ +L  +VE+F+
Subjt:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS

Query:  AKFAMPGVE
         +FAMP  +
Subjt:  AKFAMPGVE

Q9SVM4 Serine hydroxymethyltransferase 56.1e-2651.4Show/hide
Query:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS
        + G  +E++CE+C+ITLN+  +FGD   +  GGVRIGTPAMTSRG +E DFE I EFLH A  I + IQ +YGK+   F  GL +N E+ E+   VE F+
Subjt:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS

Query:  AKFAMPG
          F MPG
Subjt:  AKFAMPG

Arabidopsis top hitse value%identityAlignment
AT1G22020.1 serine hydroxymethyltransferase 63.2e-3053.21Show/hide
Query:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS
        + GK  E++CEMCHIT+NK+ IF +NG+I+ GGVRIG+PAMTSRGCLE +FE + +FL+ AAQIA   QRE+GKL    L  +    E+ +L  +VE+F+
Subjt:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS

Query:  AKFAMPGVE
         +FAMP  +
Subjt:  AKFAMPGVE

AT1G36370.1 serine hydroxymethyltransferase 71.3e-3157.41Show/hide
Query:  MVIVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVES
        M + GK  E++CEMCHITLNK  IFGDNG I+ GGVRIGTPAMT+RGC+ESDFE + +FL  AAQI   +QRE+GK    F+  L +N ++ EL  RVE+
Subjt:  MVIVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVES

Query:  FSAKFAMP
        F+ ++ MP
Subjt:  FSAKFAMP

AT4G13890.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein4.3e-2751.4Show/hide
Query:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS
        + G  +E++CE+C+ITLN+  +FGD   +  GGVRIGTPAMTSRG +E DFE I EFLH A  I + IQ +YGK+   F  GL +N E+ E+   VE F+
Subjt:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS

Query:  AKFAMPG
          F MPG
Subjt:  AKFAMPG

AT4G13930.1 serine hydroxymethyltransferase 41.4e-2550.47Show/hide
Query:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS
        + G  +E+LC++C ITLNK  +FGD+  +  GGVRIG PAMTSRG +E DFE I EFL  A  + + IQ+ YGKL   F  GL +N ++ +L   VE FS
Subjt:  IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFS

Query:  AKFAMPG
        A + MPG
Subjt:  AKFAMPG

AT4G32520.1 serine hydroxymethyltransferase 33.2e-1437.5Show/hide
Query:  GKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREY--GKLP--NAFLTG--LQSNNEVVELGYRV
        G  +E++ +M  ITLNK  + GD   +  GG+RIG+PAMT+RG  E DF V+ +F+    +I +  ++     KL   N F+T         V  L  RV
Subjt:  GKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREY--GKLP--NAFLTG--LQSNNEVVELGYRV

Query:  ESFSAKFAMPGV
        E+F+++F +PGV
Subjt:  ESFSAKFAMPGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCTTTCTGATGCCATGGTAATTGTAGGTAAAAACTTGGAGCAACTTTGTGAGATGTGTCACATTACTCTCAACAAAATTATAATATTTGGTGATAATGGA
ATTATTACTACTGGAGGAGTAAGGATTGGCACCCCAGCCATGACATCAAGAGGCTGTCTGGAATCTGATTTTGAGGTAATTGTTGAATTTCTTCACACAGCCGCT
CAAATTGCAATTTGTATTCAGCGAGAGTATGGGAAGTTGCCAAATGCTTTTCTTACGGGCCTTCAAAGTAATAATGAAGTCGTTGAGCTCGGATACCGTGTTGAA
AGTTTTTCAGCTAAATTTGCCATGCCAGGTGTTGAAACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTCTTTCTGATGCCATGGTAATTGTAGGTAAAAACTTGGAGCAACTTTGTGAGATGTGTCACATTACTCTCAACAAAATTATAATATTTGGTGATAATGGA
ATTATTACTACTGGAGGAGTAAGGATTGGCACCCCAGCCATGACATCAAGAGGCTGTCTGGAATCTGATTTTGAGGTAATTGTTGAATTTCTTCACACAGCCGCT
CAAATTGCAATTTGTATTCAGCGAGAGTATGGGAAGTTGCCAAATGCTTTTCTTACGGGCCTTCAAAGTAATAATGAAGTCGTTGAGCTCGGATACCGTGTTGAA
AGTTTTTCAGCTAAATTTGCCATGCCAGGTGTTGAAACCTGA
Protein sequenceShow/hide protein sequence
MSLSDAMVIVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVE
SFSAKFAMPGVET