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Lsi05G002000 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G002000
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTubby-like F-box protein
Genome locationchr05:2767454..2768449
RNA-Seq ExpressionLsi05G002000
SyntenyLsi05G002000
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650509.1 hypothetical protein Csa_010751 [Cucumis sativus]2.1e-1583.05Show/hide
Query:  MEKSAAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGPG
        ME+S A AILC LLLS A VTVSADAADCIDGCFTACVQKD+R MQRCE KC IKCGPG
Subjt:  MEKSAAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGPG

KAG6600340.1 hypothetical protein SDJN03_05573, partial [Cucurbita argyrosperma subsp. sororia]2.4e-1981.54Show/hide
Query:  MEKSAAA---AILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGPGINY
        M+KS AA   AILCF+LLSAAA TVSADAADCIDGCFTACVQKDTRLMQRCEGKC+IKCGP   +
Subjt:  MEKSAAA---AILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGPGINY

KYP63130.1 Tubby-like F-box protein 8 [Cajanus cajan]7.1e-1163.16Show/hide
Query:  KSAAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGPG
        K   AAI+  L++S+   +V  DA DCIDGC TACVQ+D+RL  RCEGKCKIKCGPG
Subjt:  KSAAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGPG

XP_008456107.1 PREDICTED: uncharacterized protein LOC103496144 isoform X2 [Cucumis melo]3.0e-1786.89Show/hide
Query:  MEKS--AAAAILCFLLLSA-AAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGP
        MEKS  AAAAILC LLLSA A VTVSADAADCID CFTACVQKDTR+MQRCEGKC+IKCGP
Subjt:  MEKS--AAAAILCFLLLSA-AAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGP

XP_016901882.1 PREDICTED: uncharacterized protein LOC103496144 isoform X1 [Cucumis melo]2.3e-1474.29Show/hide
Query:  MEKS--AAAAILCFLLLSA-AAVTVSADAADCIDGCFTACVQKD---------TRLMQRCEGKCKIKCGP
        MEKS  AAAAILC LLLSA A VTVSADAADCID CFTACVQKD          R+MQRCEGKC+IKCGP
Subjt:  MEKS--AAAAILCFLLLSA-AAVTVSADAADCIDGCFTACVQKD---------TRLMQRCEGKCKIKCGP

TrEMBL top hitse value%identityAlignment
A0A0A0LC00 Uncharacterized protein6.7e-1582.76Show/hide
Query:  MEKSAAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGP
        ME+S A AILC LLLS A VTVSADAADCIDGCFTACVQKD+R MQRCE KC IKCGP
Subjt:  MEKSAAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGP

A0A0L9VG55 Uncharacterized protein1.3e-1058.33Show/hide
Query:  KSAAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGPGINY
        K   AA + FLL+++   +V  DAADC+DGC TACVQ+D+RL QRCE KC I+CGPG N+
Subjt:  KSAAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGPGINY

A0A151T7U7 Tubby-like F-box protein3.4e-1163.16Show/hide
Query:  KSAAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGPG
        K   AAI+  L++S+   +V  DA DCIDGC TACVQ+D+RL  RCEGKCKIKCGPG
Subjt:  KSAAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGPG

A0A1S3C2J8 uncharacterized protein LOC103496144 isoform X21.4e-1786.89Show/hide
Query:  MEKS--AAAAILCFLLLSA-AAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGP
        MEKS  AAAAILC LLLSA A VTVSADAADCID CFTACVQKDTR+MQRCEGKC+IKCGP
Subjt:  MEKS--AAAAILCFLLLSA-AAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGP

A0A1S4E0W4 uncharacterized protein LOC103496144 isoform X11.1e-1474.29Show/hide
Query:  MEKS--AAAAILCFLLLSA-AAVTVSADAADCIDGCFTACVQKD---------TRLMQRCEGKCKIKCGP
        MEKS  AAAAILC LLLSA A VTVSADAADCID CFTACVQKD          R+MQRCEGKC+IKCGP
Subjt:  MEKS--AAAAILCFLLLSA-AAVTVSADAADCIDGCFTACVQKD---------TRLMQRCEGKCKIKCGP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G25275.1 unknown protein1.5e-0645.45Show/hide
Query:  AAAILCFLLLSAAAVTVSAD--AADCIDGCFTACVQKDTRLMQRCEGKCKIKCGP
        AA ++   L S+  +   A     DC DGC TACVQ+D R   RC+ KC I+CGP
Subjt:  AAAILCFLLLSAAAVTVSAD--AADCIDGCFTACVQKDTRLMQRCEGKCKIKCGP

AT1G25275.2 unknown protein5.6e-0643.64Show/hide
Query:  AAAILCFLLLSAAAVTVSAD--AADCIDGCFTACVQKDTRLMQRCEGKCKIKCGP
        AA ++   L S+  +   A     DC DGC TACVQ+D     RC+ KC I+CGP
Subjt:  AAAILCFLLLSAAAVTVSAD--AADCIDGCFTACVQKDTRLMQRCEGKCKIKCGP

AT1G25275.3 unknown protein6.0e-0845.76Show/hide
Query:  AAAILCFLLLSAAAVTVSAD--AADCIDGCFTACVQKDTRLMQRCEGKCKIKCGPGINY
        AA ++   L S+  +   A     DC DGC TACVQ+D R   RC+ KC I+CGPG +Y
Subjt:  AAAILCFLLLSAAAVTVSAD--AADCIDGCFTACVQKDTRLMQRCEGKCKIKCGPGINY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAATCTGCGGCGGCGGCGATTTTGTGCTTCTTGCTACTTTCTGCGGCGGCGGTGACGGTTTCAGCCGACGCTGCCGACTGCATCGACGGCTGTTTCACCGCTTG
TGTCCAGAAAGACACGAGGCTGATGCAGCGTTGTGAGGGCAAGTGTAAAATTAAGTGCGGTCCAGGTATTAATTATTTATTGGAATTAACTTTTATAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAATCTGCGGCGGCGGCGATTTTGTGCTTCTTGCTACTTTCTGCGGCGGCGGTGACGGTTTCAGCCGACGCTGCCGACTGCATCGACGGCTGTTTCACCGCTTG
TGTCCAGAAAGACACGAGGCTGATGCAGCGTTGTGAGGGCAAGTGTAAAATTAAGTGCGGTCCAGGTATTAATTATTTATTGGAATTAACTTTTATAATTTAA
Protein sequenceShow/hide protein sequence
MEKSAAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGPGINYLLELTFII