CuGenDBv2

Gene ID	Lsi05G002270
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	CBS domain-containing protein CBSX1, chloroplastic-like
Genome location	chr05:3022185..3030573
RNA-Seq Expression	Lsi05G002270
Synteny	Lsi05G002270
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7014971.1 CBS domain-containing protein CBSX1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

9.8e-53

75.8

Show/hide

Query:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLASSGAGVVDSFPIRGTYTVGDFMTRKENLYVVKPTTTVD
        M SISLSNSHAL RAYPHHL HSQ H    +PL SSNSLSKLQRFGISDR S+RPPLPLV ASSGAGVV SFPIRGTYTVGDFMTRKENLYVVKPTTT D
Subjt:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLASSGAGVVDSFPIRGTYTVGDFMTRKENLYVVKPTTTVD

Query:  E--------------------GAVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK
        E                      VGV+SDYDLLALDSISGGTQSDTNLFPDVDSSWK
Subjt:  E--------------------GAVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK

XP_004140707.1 CBS domain-containing protein CBSX1, chloroplastic [Cucumis sativus]

6.6e-57

78.34

Show/hide

Query:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLASSGAGVVDSFPIRGTYTVGDFMTRKENLYVVKPTTTVD
        M SISLSNSH LAR YPHHLPHS R Q C RPLLS+NSLSKL RFGISDR  ARPPLPLVLASSGAGVVDSFP+RGTYTVGDFMTRKENLYVVKPTTTVD
Subjt:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLASSGAGVVDSFPIRGTYTVGDFMTRKENLYVVKPTTTVD

Query:  E--------------------GAVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK
        E                      VGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK
Subjt:  E--------------------GAVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK

XP_008456144.1 PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis melo]

6.0e-58

79.62

Show/hide

Query:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLASSGAGVVDSFPIRGTYTVGDFMTRKENLYVVKPTTTVD
        M SISLSNSHALAR YPHHLPHS R Q C RPLLSSNSLSKL RFGISDR  ARPPLPLVLASSGAGVVDSFP+RGTYTVGDFMTRKENLYVVKPTTTVD
Subjt:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLASSGAGVVDSFPIRGTYTVGDFMTRKENLYVVKPTTTVD

Query:  E--------------------GAVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK
        E                      VGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK
Subjt:  E--------------------GAVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK

XP_022984710.1 CBS domain-containing protein CBSX2, chloroplastic-like isoform X2 [Cucurbita maxima]

4.9e-52

75.16

Show/hide

Query:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLASSGAGVVDSFPIRGTYTVGDFMTRKENLYVVKPTTTVD
        M SISLSNSHALAR YPHHL HSQ H    +PL SSN LSKLQRFGISDR S RPPLPLVLASSGA VV SFPIRGTYTVGDFMTRKENLYVVKPTTT D
Subjt:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLASSGAGVVDSFPIRGTYTVGDFMTRKENLYVVKPTTTVD

Query:  E--------------------GAVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK
        E                      VGV+SDYDLLALDSISGGTQSDTNLFPDVDSSWK
Subjt:  E--------------------GAVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK

XP_038894434.1 CBS domain-containing protein CBSX2, chloroplastic-like [Benincasa hispida]

2.6e-61

83.44

Show/hide

Query:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLASSGAGVVDSFPIRGTYTVGDFMTRKENLYVVKPTTTVD
        M SISLSNSHALARAYPHHLPHSQR Q CPRPLLSSNSLSKLQRFGISDR SARPPLPLVLASSGAGVVDSFPIRGTYTVGDFMTRKENLYVVKPTTTVD
Subjt:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLASSGAGVVDSFPIRGTYTVGDFMTRKENLYVVKPTTTVD

Query:  E--------------------GAVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK
        E                      VGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK
Subjt:  E--------------------GAVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L716 Uncharacterized protein

3.2e-57

78.34

Show/hide

Query:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLASSGAGVVDSFPIRGTYTVGDFMTRKENLYVVKPTTTVD
        M SISLSNSH LAR YPHHLPHS R Q C RPLLS+NSLSKL RFGISDR  ARPPLPLVLASSGAGVVDSFP+RGTYTVGDFMTRKENLYVVKPTTTVD
Subjt:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLASSGAGVVDSFPIRGTYTVGDFMTRKENLYVVKPTTTVD

Query:  E--------------------GAVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK
        E                      VGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK
Subjt:  E--------------------GAVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK

A0A1S3C251 CBS domain-containing protein CBSX1, chloroplastic-like

2.9e-58

79.62

Show/hide

Query:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLASSGAGVVDSFPIRGTYTVGDFMTRKENLYVVKPTTTVD
        M SISLSNSHALAR YPHHLPHS R Q C RPLLSSNSLSKL RFGISDR  ARPPLPLVLASSGAGVVDSFP+RGTYTVGDFMTRKENLYVVKPTTTVD
Subjt:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLASSGAGVVDSFPIRGTYTVGDFMTRKENLYVVKPTTTVD

Query:  E--------------------GAVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK
        E                      VGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK
Subjt:  E--------------------GAVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK

A0A5A7T6Y9 CBS domain-containing protein CBSX1

2.9e-58

79.62

Show/hide

Query:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLASSGAGVVDSFPIRGTYTVGDFMTRKENLYVVKPTTTVD
        M SISLSNSHALAR YPHHLPHS R Q C RPLLSSNSLSKL RFGISDR  ARPPLPLVLASSGAGVVDSFP+RGTYTVGDFMTRKENLYVVKPTTTVD
Subjt:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLASSGAGVVDSFPIRGTYTVGDFMTRKENLYVVKPTTTVD

Query:  E--------------------GAVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK
        E                      VGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK
Subjt:  E--------------------GAVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK

A0A6J1J9C6 CBS domain-containing protein CBSX2, chloroplastic-like isoform X2

2.4e-52

75.16

Show/hide

Query:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLASSGAGVVDSFPIRGTYTVGDFMTRKENLYVVKPTTTVD
        M SISLSNSHALAR YPHHL HSQ H    +PL SSN LSKLQRFGISDR S RPPLPLVLASSGA VV SFPIRGTYTVGDFMTRKENLYVVKPTTT D
Subjt:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLASSGAGVVDSFPIRGTYTVGDFMTRKENLYVVKPTTTVD

Query:  E--------------------GAVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK
        E                      VGV+SDYDLLALDSISGGTQSDTNLFPDVDSSWK
Subjt:  E--------------------GAVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK

A0A6J1JBB9 CBS domain-containing protein CBSX2, chloroplastic-like isoform X1

9.0e-52

72.84

Show/hide

Query:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLASSGAGVVDSFPIRGTYTVGDFMTRKENLYVVKPTTTVD
        M SISLSNSHALAR YPHHL HSQ H    +PL SSN LSKLQRFGISDR S RPPLPLVLASSGA VV SFPIRGTYTVGDFMTRKENLYVVKPTTT D
Subjt:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLASSGAGVVDSFPIRGTYTVGDFMTRKENLYVVKPTTTVD

Query:  E-------------------------GAVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK
        E                           VGV+SDYDLLALDSISGGTQSDTNLFPDVDSSWK
Subjt:  E-------------------------GAVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK

SwissProt top hits

e value

%identity

Alignment

O23193 CBS domain-containing protein CBSX1, chloroplastic

1.1e-17

41.8

Show/hide

Query:  SLSKLQRFGISDRCSARPPLPLVLASSGAGVV--DSFPIRGTYTVGDFMTRKENLYVVKPTTTVDEG--------------------AVGVVSDYDLLAL
        S+    +F  S    ++  +P   +++G+ ++   S P  G YTVG+FMT+KE+L+VVKPTTTVDE                      VG+VSDYDLLAL
Subjt:  SLSKLQRFGISDRCSARPPLPLVLASSGAGVV--DSFPIRGTYTVGDFMTRKENLYVVKPTTTVDEG--------------------AVGVVSDYDLLAL

Query:  DSISGGTQSDTNLFPDVDSSWK
        DSISG  +++ ++FP+VDS+WK
Subjt:  DSISGGTQSDTNLFPDVDSSWK

Q9C5D0 CBS domain-containing protein CBSX2, chloroplastic

1.4e-17

44.65

Show/hide

Query:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLAS-SGAGVVDSFPIR-GTYTVGDFMTRKENLYVVKPTTT
        M SISLSNS  + R     L  S  HQ       SS SL  L     S   S    +    A+ +     +S P + G YTVGDFMT ++NL+VVKP+T+
Subjt:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLAS-SGAGVVDSFPIR-GTYTVGDFMTRKENLYVVKPTTT

Query:  VDEG--------------------AVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK
        VD+                      VGVVSDYDLLALDSISG +Q+DTNLFPDVDS+WK
Subjt:  VDEG--------------------AVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK

Arabidopsis top hits

e value

%identity

Alignment

AT4G34120.1 Cystathionine beta-synthase (CBS) family protein

9.9e-19

44.65

Show/hide

Query:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLAS-SGAGVVDSFPIR-GTYTVGDFMTRKENLYVVKPTTT
        M SISLSNS  + R     L  S  HQ       SS SL  L     S   S    +    A+ +     +S P + G YTVGDFMT ++NL+VVKP+T+
Subjt:  MISISLSNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLAS-SGAGVVDSFPIR-GTYTVGDFMTRKENLYVVKPTTT

Query:  VDEG--------------------AVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK
        VD+                      VGVVSDYDLLALDSISG +Q+DTNLFPDVDS+WK
Subjt:  VDEG--------------------AVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK

AT4G36910.1 Cystathionine beta-synthase (CBS) family protein

7.6e-19

41.8

Show/hide

Query:  SLSKLQRFGISDRCSARPPLPLVLASSGAGVV--DSFPIRGTYTVGDFMTRKENLYVVKPTTTVDEG--------------------AVGVVSDYDLLAL
        S+    +F  S    ++  +P   +++G+ ++   S P  G YTVG+FMT+KE+L+VVKPTTTVDE                      VG+VSDYDLLAL
Subjt:  SLSKLQRFGISDRCSARPPLPLVLASSGAGVV--DSFPIRGTYTVGDFMTRKENLYVVKPTTTVDEG--------------------AVGVVSDYDLLAL

Query:  DSISGGTQSDTNLFPDVDSSWK
        DSISG  +++ ++FP+VDS+WK
Subjt:  DSISGGTQSDTNLFPDVDSSWK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

mRNA sequence

Show/hide mRNA sequence

ATGAAAATTGTAGGGCTAAAACCCCAACATCACACATTGTACGTCCGCTCATTGATTAAAGTCCCTGGACTTTGTAAATCTCCGACCGACAAGACGGGGGTTTTCCTATC
TCCATTTAACGCCTTTTTTTCACTCTTGGGGAAGTGTTATTGCTTCCTATCCTTACACGGAACGGAAGCTAATTACAACGTAATTCTCCGATTCCACTTTGATTCTGAAA
ATTTTCCGGTTGTAATTCTCTTCCGTTCGATTACTGTATTCGTTTCTTTTCCATCTGTGAATTTCTCTGTTACTCCTGAAGCAGCCAGCAAAATGATCTCCATCTCTCTC
TCCAATTCACATGCTCTCGCGCGGGCTTATCCTCATCATCTTCCTCACTCTCAGCGCCACCAACGGTGTCCCCGCCCTCTGCTTTCGTCCAATTCTCTTTCTAAGCTACA
GCGGTTTGGGATCTCCGATCGATGCTCCGCTCGACCTCCCTTGCCTTTGGTTCTTGCTTCTTCTGGAGCTGGCGTCGTTGATTCCTTTCCGATAAGAGGAACATATACGG
TTGGTGATTTTATGACGAGAAAGGAGAATCTTTATGTTGTTAAACCTACAACAACAGTGGATGAAGGTGCGGTTGGAGTCGTCTCAGATTATGACTTATTAGCACTTGAT
TCCATTTCAGGTGGTACTCAAAGTGATACCAATCTGTTCCCTGATGTGGATAGTTCGTGGAAAGTATGTAAGCAATGCCATTTATCATCTGGTTATTTGCTTTTCTTTTG
TTTCGCAAACATGAGGGATGTTAAGAAAATGCAATGACTCAGCAAACCTGACCAATACAACCAAACTTTTTGGATTGGTTTTCAGCTATTTGAACCCAAATCCTAATCCT
AATAAATTGAAGATTTGTCCATAATTTTTTAATTTATCCTAATCCTACCACATCATGTTGAAATAAATAACTTGAGCTTATTATTATTTTTATTAGAGAAAAAATAAGTT
CCATGTCTAATAGCCTAACCCAACCAAAATATTACTCAAGCCGGATTGGGGTTTCACTCTCATCTGATCAGGTTTATTTGGTTGGACAAATTTGCAACTGATAATTTGTG
TTGGGTTCAGAATGTCTCTTAACTCAATTTATTGCACGAACACATTCAGTAGTTTACATATAGGTGATTTTTCCCGTTTTCCATAGTTCTCCTTTTCTTTTTGGGATTTT
GTATAAAGCCAGAAATTAGCTCTAACATTGACAGCCCTTGTTTAAGTAAAATCTTTTGGAGAAAGAGTCGCAGGCATTAGCTCTGCCATCGACATTATTTGATTAAGTAA
ATTATATAGAGAAAGAAGAGCCACGGAATTTAGCTCTGCCAATGACATCCCTTTATTAAGTAAAATTCCTTGAAGAAAGAAGAATCACATGATCATCATCACCGTGAATT
ATGTGGATCGGTGGTTCACCGCCATCTTTTAATTTTAAAAAAATGATAGAAGTATATTTTTGCTGAATATGGTGGCAGACATTCAATGAGATCCAGAAACTGCTCAGTAA
AACAAATGGTAAAGTTGTTGGCGACCTGATGACATCTGCTCCACTAGCCGTTCGTGAAACTTCAAATTTAGAAGATGCTGCCAAGTTGTTGCTCGAAACAAAATATCGCC
GATTGCCAGTAGTAGATGCAGATGGCAAGCTGGTGGGGATCATTACTAGGGGAAATGTCGTTAGAGCTGCTTTGCAGATAAAACGTGCTGCTGAAAGGTCGACATAATTC
TGGAAACATCGACTGGCGTCGCTCTGAGGTAAAACGCTACCAGAAAGCTATAGCATTATTTGTAGATGATGAATGTAGTTAGTATCTTATAGCTTACACAGGGTTTGGAT
TGTTACAATTTACCTGAAGTTGTGGATTCCGTGCTGAAGTAAACTAGAGCTTTGAAGGGAAGTTTATTGATTCTCTAAGATTCTTTCTTCCCAATATCCTAACTAAGAAA
TGTTGGTCTATGTCAATATTTGGGTATTCCCAGCATTTCAGGTCAGCCCACTGTAAGATTTCTCTATTAAGTTCGTCATTATAGTTTGGGACCTCATTGTTTAAATTTTG
CCTAAACATTTTGAATATAATTAGCATCTTTTTACTTCTTTCGAAA

Protein sequence

Show/hide protein sequence

MKIVGLKPQHHTLYVRSLIKVPGLCKSPTDKTGVFLSPFNAFFSLLGKCYCFLSLHGTEANYNVILRFHFDSENFPVVILFRSITVFVSFPSVNFSVTPEAASKMISISL
SNSHALARAYPHHLPHSQRHQRCPRPLLSSNSLSKLQRFGISDRCSARPPLPLVLASSGAGVVDSFPIRGTYTVGDFMTRKENLYVVKPTTTVDEGAVGVVSDYDLLALD
SISGGTQSDTNLFPDVDSSWKVCKQCHLSSGYLLFFCFANMRDVKKMQ

Lsi05G002270 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome