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Lsi05G002490 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G002490
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionhomeobox protein HAT3.1 isoform X2
Genome locationchr05:3211997..3213313
RNA-Seq ExpressionLsi05G002490
SyntenyLsi05G002490
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN57486.1 hypothetical protein Csa_010932 [Cucumis sativus]3.0e-1283.67Show/hide
Query:  MIMSGGSGRQTVRVKAGQNAQSNGGPDLEDSEIKPLYSLFPLRRHGRTK
        +I SGGSGRQTVRVKA QNAQSNGGPDLEDSE KPLYSLFPLR   RT+
Subjt:  MIMSGGSGRQTVRVKAGQNAQSNGGPDLEDSEIKPLYSLFPLRRHGRTK
XP_022149327.1 homeobox protein HAT3.1 isoform X2 [Momordica charantia]7.7e-0876.6Show/hide
Query:  MSGGSGRQTVRVKAGQNAQS-NGGPDLEDSEIKPLYSLFPLRRHGRT
        M GGSGRQTVRVKAG+NA + NGGPDLEDSE KPLYSLF LR    T
Subjt:  MSGGSGRQTVRVKAGQNAQS-NGGPDLEDSEIKPLYSLFPLRRHGRT
TrEMBL top hitse value%identityAlignment
A0A0A0LBT3 Uncharacterized protein1.5e-1283.67Show/hide
Query:  MIMSGGSGRQTVRVKAGQNAQSNGGPDLEDSEIKPLYSLFPLRRHGRTK
        +I SGGSGRQTVRVKA QNAQSNGGPDLEDSE KPLYSLFPLR   RT+
Subjt:  MIMSGGSGRQTVRVKAGQNAQSNGGPDLEDSEIKPLYSLFPLRRHGRTK
A0A6J1D7M5 homeobox protein HAT3.1 isoform X23.7e-0876.6Show/hide
Query:  MSGGSGRQTVRVKAGQNAQS-NGGPDLEDSEIKPLYSLFPLRRHGRT
        M GGSGRQTVRVKAG+NA + NGGPDLEDSE KPLYSLF LR    T
Subjt:  MSGGSGRQTVRVKAGQNAQS-NGGPDLEDSEIKPLYSLFPLRRHGRT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTATGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTGGGCAAAATGCACAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGATAAAGCCGCTTTA
TTCTCTCTTCCCGCTGAGAAGACATGGAAGAACCAAGAACAACAACCACCACCACCACCACCACCACCACCATCGCCAAATTTCTTACTCTTTTCTTCCAAAATCTCCAT
TAACAAACATCTCCACCGCCTACAAGATCCAAAAACCACCCTCTTTCTCCGACAATACTATGCTCTTCACCAACACCAGAAATGGAGTTGGGAGTACGAAATTTCGTGGT
AGGATTACACTTATGTTAATACATGGTCTGATCAGGTTTGAATTGCCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTATGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTGGGCAAAATGCACAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGATAAAGCCGCTTTA
TTCTCTCTTCCCGCTGAGAAGACATGGAAGAACCAAGAACAACAACCACCACCACCACCACCACCACCACCATCGCCAAATTTCTTACTCTTTTCTTCCAAAATCTCCAT
TAACAAACATCTCCACCGCCTACAAGATCCAAAAACCACCCTCTTTCTCCGACAATACTATGCTCTTCACCAACACCAGAAATGGAGTTGGGAGTACGAAATTTCGTGGT
AGGATTACACTTATGTTAATACATGGTCTGATCAGGTTTGAATTGCCGTAG
Protein sequenceShow/hide protein sequence
MIMSGGSGRQTVRVKAGQNAQSNGGPDLEDSEIKPLYSLFPLRRHGRTKNNNHHHHHHHHHRQISYSFLPKSPLTNISTAYKIQKPPSFSDNTMLFTNTRNGVGSTKFRG
RITLMLIHGLIRFELP