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Lsi05G002650 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G002650
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontranscription repressor KAN1-like isoform X1
Genome locationchr05:3364907..3366242
RNA-Seq ExpressionLsi05G002650
SyntenyLsi05G002650
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0010158 - abaxial cell fate specification (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
InterPro domainsIPR044847 - Transcription repressor KANADI


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140729.1 transcription repressor KAN1 isoform X1 [Cucumis sativus]1.4e-2390.62Show/hide
Query:  DVWPQTNSNEMD--VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVKED
        DVWPQTNSNEMD  V  PTLSTQQK+MHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVK+D
Subjt:  DVWPQTNSNEMD--VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVKED

XP_008456199.1 PREDICTED: transcription repressor KAN1-like isoform X1 [Cucumis melo]2.0e-2288.89Show/hide
Query:  DVWPQTNSNEMD-VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVKED
        DVWPQTNSNEMD V  PTLSTQ+K MHQIQECDSGA+KRYNSECKKPSLEFRLGRAEWDVK+D
Subjt:  DVWPQTNSNEMD-VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVKED

XP_008456205.1 PREDICTED: transcription repressor KAN1-like isoform X4 [Cucumis melo]2.0e-2288.89Show/hide
Query:  DVWPQTNSNEMD-VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVKED
        DVWPQTNSNEMD V  PTLSTQ+K MHQIQECDSGA+KRYNSECKKPSLEFRLGRAEWDVK+D
Subjt:  DVWPQTNSNEMD-VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVKED

XP_011651217.1 transcription repressor KAN1 isoform X3 [Cucumis sativus]1.4e-2390.62Show/hide
Query:  DVWPQTNSNEMD--VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVKED
        DVWPQTNSNEMD  V  PTLSTQQK+MHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVK+D
Subjt:  DVWPQTNSNEMD--VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVKED

XP_011651219.1 transcription repressor KAN1 isoform X4 [Cucumis sativus]1.4e-2390.62Show/hide
Query:  DVWPQTNSNEMD--VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVKED
        DVWPQTNSNEMD  V  PTLSTQQK+MHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVK+D
Subjt:  DVWPQTNSNEMD--VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVKED

TrEMBL top hitse value%identityAlignment
A0A0A0LBR3 SANT domain-containing protein6.8e-2490.62Show/hide
Query:  DVWPQTNSNEMD--VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVKED
        DVWPQTNSNEMD  V  PTLSTQQK+MHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVK+D
Subjt:  DVWPQTNSNEMD--VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVKED

A0A1S3C2A4 transcription repressor KAN1-like isoform X49.8e-2388.89Show/hide
Query:  DVWPQTNSNEMD-VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVKED
        DVWPQTNSNEMD V  PTLSTQ+K MHQIQECDSGA+KRYNSECKKPSLEFRLGRAEWDVK+D
Subjt:  DVWPQTNSNEMD-VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVKED

A0A1S3C2S7 transcription repressor KAN1-like isoform X19.8e-2388.89Show/hide
Query:  DVWPQTNSNEMD-VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVKED
        DVWPQTNSNEMD V  PTLSTQ+K MHQIQECDSGA+KRYNSECKKPSLEFRLGRAEWDVK+D
Subjt:  DVWPQTNSNEMD-VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVKED

A0A1S3C3Y9 transcription repressor KAN1-like isoform X39.8e-2388.89Show/hide
Query:  DVWPQTNSNEMD-VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVKED
        DVWPQTNSNEMD V  PTLSTQ+K MHQIQECDSGA+KRYNSECKKPSLEFRLGRAEWDVK+D
Subjt:  DVWPQTNSNEMD-VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVKED

A0A6J1CND7 transcription repressor KAN1-like isoform X12.9e-2289.23Show/hide
Query:  DVWPQTNSNEMDVIRPTLST--QQKSMHQIQECDSGAMKRYNSECKKPS--LEFRLGRAEWDVKE
        DVWPQTNSNEMDVIRPT ST  QQKSMHQI+ECDSGAMKRY+SECKKPS  LEFRLGRAEWDVKE
Subjt:  DVWPQTNSNEMDVIRPTLST--QQKSMHQIQECDSGAMKRYNSECKKPS--LEFRLGRAEWDVKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCAAATTAAAGATGAGAGCACTTGTGATTTTATTTTCAACAAATGGAACAAGAATCCCAAAACTCCCGAGAATCAACTCGCGGGAGAAATGGTGCATTGTAGATC
AAGTGTTTCTACGTCATTGACTCAAAAAGTCATCCAAGGAGGGGTTGATCTACAACGCACCATTCGGGTTTCGGGTTTCGGTTCCATTTGTCGAAGGGAGAAACTCACAG
ATGTTTGGCCACAAACAAACTCTAATGAAATGGATGTCATTAGACCAACTTTGTCTACACAACAAAAATCCATGCACCAAATTCAGGAATGTGATTCAGGTGCAATGAAG
AGATATAATTCAGAATGCAAGAAACCAAGCTTGGAGTTCAGATTAGGCAGAGCAGAGTGGGATGTGAAAGAAGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGCATCAAATTAAAGATGAGAGCACTTGTGATTTTATTTTCAACAAATGGAACAAGAATCCCAAAACTCCCGAGAATCAACTCGCGGGAGAAATGGTGCATTGTAGATC
AAGTGTTTCTACGTCATTGACTCAAAAAGTCATCCAAGGAGGGGTTGATCTACAACGCACCATTCGGGTTTCGGGTTTCGGTTCCATTTGTCGAAGGGAGAAACTCACAG
ATGTTTGGCCACAAACAAACTCTAATGAAATGGATGTCATTAGACCAACTTTGTCTACACAACAAAAATCCATGCACCAAATTCAGGAATGTGATTCAGGTGCAATGAAG
AGATATAATTCAGAATGCAAGAAACCAAGCTTGGAGTTCAGATTAGGCAGAGCAGAGTGGGATGTGAAAGAAGACTAAATTTGGTCTCTCTTCAATCAAAAAGCTTTTTT
TTTTTCTCTTTTTTTTTTTTTTTTTT
Protein sequenceShow/hide protein sequence
MHQIKDESTCDFIFNKWNKNPKTPENQLAGEMVHCRSSVSTSLTQKVIQGGVDLQRTIRVSGFGSICRREKLTDVWPQTNSNEMDVIRPTLSTQQKSMHQIQECDSGAMK
RYNSECKKPSLEFRLGRAEWDVKED