CuGenDBv2

Gene ID	Lsi05G002740
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Kinesin light chain 3 isoform X1
Genome location	chr05:3567559..3569776
RNA-Seq Expression	Lsi05G002740
Synteny	Lsi05G002740
Gene Ontology terms	GO:0005515 - protein binding (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily IPR019734 - Tetratricopeptide repeat

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0047377.1 kinesin light chain 3 isoform X1 [Cucumis melo var. makuwa]

5.7e-77

77.45

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Query:  MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDS
        M TRQAASKWLKRL FRST  H  SE+    NVSI SSRC VKSSS  N NG+HDGYLNGFPWV LSGPAAAIILGINSNPVLA++ASFKPSSENGIED 
Subjt:  MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDS

Query:  DTIGLRKVEDGS-----------------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGT
        +T+GLRKVEDGS                       GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGT
Subjt:  DTIGLRKVEDGS-----------------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGT

Query:  EDIR
        EDIR
Subjt:  EDIR

TYK14053.1 kinesin light chain 3 [Cucumis melo var. makuwa]

2.3e-78

82.29

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Query:  MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDS
        M TRQAASKWLKRL FRST  H  SE+    NVSI SSRC VKSSS  N NG+HDGYLNGFPWV LSGPAAAIILGINSNPVLA++ASFKPSSENGIED 
Subjt:  MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDS

Query:  DTIGLRKVEDGS-----------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGTEDIR
        +T+GLRKVEDGS           GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGTEDIR
Subjt:  DTIGLRKVEDGS-----------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGTEDIR

XP_008457118.2 PREDICTED: uncharacterized protein LOC103496867 [Cucumis melo]

5.7e-77

77.45

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Query:  MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDS
        M TRQAASKWLKRL FRST  H  SE+    NVSI SSRC VKSSS  N NG+HDGYLNGFPWV LSGPAAAIILGINSNPVLA++ASFKPSSENGIED 
Subjt:  MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDS

Query:  DTIGLRKVEDGS-----------------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGT
        +T+GLRKVEDGS                       GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGT
Subjt:  DTIGLRKVEDGS-----------------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGT

Query:  EDIR
        EDIR
Subjt:  EDIR

XP_038901521.1 uncharacterized protein LOC120088362 isoform X1 [Benincasa hispida]

4.2e-80

80.39

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Query:  MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDS
        M TRQAASKWL RLIFRSTV HR  ES  S NVSIL SRC VKSSSCNN NGFHD YLNGFPWVLL GPAAAIILGINSNPVLAKDASFKPSSENGIEDS
Subjt:  MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDS

Query:  DTIGLRKVEDGS-----------------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGT
        DTIGLRKVEDGS                       GRLE+AEKYFI+AIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAI+ILEESYG 
Subjt:  DTIGLRKVEDGS-----------------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGT

Query:  EDIR
        EDIR
Subjt:  EDIR

XP_038901528.1 uncharacterized protein LOC120088362 isoform X2 [Benincasa hispida]

4.2e-80

80.39

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Query:  MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDS
        M TRQAASKWL RLIFRSTV HR  ES  S NVSIL SRC VKSSSCNN NGFHD YLNGFPWVLL GPAAAIILGINSNPVLAKDASFKPSSENGIEDS
Subjt:  MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDS

Query:  DTIGLRKVEDGS-----------------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGT
        DTIGLRKVEDGS                       GRLE+AEKYFI+AIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAI+ILEESYG 
Subjt:  DTIGLRKVEDGS-----------------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGT

Query:  EDIR
        EDIR
Subjt:  EDIR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LA19 TPR_REGION domain-containing protein

1.7e-74

75.49

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Query:  MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDS
        M TRQAASKWLKRL FRST  H  S +    NVSI SSRC  KSSS  N NG+HDGYLN FPWVLLSGPA+AIILGINSNPVLA++ASFKPSSENGIED 
Subjt:  MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDS

Query:  DTIGLRKVEDGS-----------------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGT
        +T+GLRKVEDGS                       GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAI ILEESYGT
Subjt:  DTIGLRKVEDGS-----------------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGT

Query:  EDIR
        EDIR
Subjt:  EDIR

A0A1S3C5G7 uncharacterized protein LOC103496867

2.8e-77

77.45

Show/hide

Query:  MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDS
        M TRQAASKWLKRL FRST  H  SE+    NVSI SSRC VKSSS  N NG+HDGYLNGFPWV LSGPAAAIILGINSNPVLA++ASFKPSSENGIED 
Subjt:  MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDS

Query:  DTIGLRKVEDGS-----------------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGT
        +T+GLRKVEDGS                       GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGT
Subjt:  DTIGLRKVEDGS-----------------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGT

Query:  EDIR
        EDIR
Subjt:  EDIR

A0A5A7TZJ1 Kinesin light chain 3 isoform X1

2.8e-77

77.45

Show/hide

Query:  MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDS
        M TRQAASKWLKRL FRST  H  SE+    NVSI SSRC VKSSS  N NG+HDGYLNGFPWV LSGPAAAIILGINSNPVLA++ASFKPSSENGIED 
Subjt:  MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDS

Query:  DTIGLRKVEDGS-----------------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGT
        +T+GLRKVEDGS                       GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGT
Subjt:  DTIGLRKVEDGS-----------------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGT

Query:  EDIR
        EDIR
Subjt:  EDIR

A0A5D3CQC2 Kinesin light chain 3

1.1e-78

82.29

Show/hide

Query:  MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDS
        M TRQAASKWLKRL FRST  H  SE+    NVSI SSRC VKSSS  N NG+HDGYLNGFPWV LSGPAAAIILGINSNPVLA++ASFKPSSENGIED 
Subjt:  MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDS

Query:  DTIGLRKVEDGS-----------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGTEDIR
        +T+GLRKVEDGS           GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGTEDIR
Subjt:  DTIGLRKVEDGS-----------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGTEDIR

A0A6J1KEU5 uncharacterized protein LOC111492620

3.7e-74

74.51

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Query:  MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDS
        M TR AASKWLKRL FRST  +R SE+  S+NV I SSRC VKSSS NN N + DGYLNGFPWVL SGPAAAIILGINSNPVLAKDA  KPSSENGIE+S
Subjt:  MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDS

Query:  DTIGLRKVEDGS-----------------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGT
        DTIGLRKVEDGS                       G+LE+AE+YF+SAIQEAKEGFGERDPHVASAFNNLAELYRV KTFDKAEPMYLEAINILEESYG+
Subjt:  DTIGLRKVEDGS-----------------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGT

Query:  EDIR
        EDIR
Subjt:  EDIR

SwissProt top hits

e value

%identity

Alignment

A5HK05 Amyloid protein-binding protein 2

1.1e-06

Show/hide

Query:  LEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGTED
        L++A    +S++Q AK+ FGE +   A  + NL  LY+ M+ F +AE M+++AI I E+  G ED
Subjt:  LEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGTED

P0CI65 Nephrocystin-3

1.4e-04

33.33

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Query:  GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGTEDIRGLHINIVQRLCFIAWMSH
        G+LE A   +  A++  ++ FG + P VA+A  NLA LY  +K    A P+Y  A+ + E+S G      LH  + + L  +A +S+
Subjt:  GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGTEDIRGLHINIVQRLCFIAWMSH

Q7Z494 Nephrocystin-3

1.4e-04

39.06

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Query:  GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYG
        G+L+ A   +  A++  ++ FG + P VA+A  NLA LY  MK   +A P+Y  A+ I E+S G
Subjt:  GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYG

Q92624 Amyloid protein-binding protein 2

1.1e-06

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Query:  LEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGTED
        L++A    +S++Q AK+ FGE +   A  + NL  LY+ M+ F +AE M+++AI I E+  G ED
Subjt:  LEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGTED

Q9DAX9 Amyloid protein-binding protein 2

1.1e-06

Show/hide

Query:  LEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGTED
        L++A    +S++Q AK+ FGE +   A  + NL  LY+ M+ F +AE M+++AI I E+  G ED
Subjt:  LEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGTED

Arabidopsis top hits

e value

%identity

Alignment

AT5G37590.1 Tetratricopeptide repeat (TPR)-like superfamily protein

8.3e-34

48.52

Show/hide

Query:  LSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDSDTIGLRKVEDGS-----------------------
        LS + ++   +   G+  +   L+   W++LSG AA  ILG   N VLA+D S K  S + +++S   GL K+EDGS                       
Subjt:  LSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDSDTIGLRKVEDGS-----------------------

Query:  GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGTEDIR
        G+LE AE+ F SAIQEAKEGFGE+DPHVASA NNLAELYRV K FDKAEP+YLEA++ILEE YG +D+R
Subjt:  GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGTEDIR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCCACAAGACAAGCAGCTTCAAAATGGTTAAAGAGATTAATCTTTCGCTCTACAGTACTCCATCGCGCTTCCGAATCTTCCGTGTCTGTCAACGTATCGATCTTGTC
CTCCCGCTGCAAAGTGAAATCTTCTTCGTGTAATAACGGCAATGGATTTCATGATGGTTATCTCAATGGTTTTCCATGGGTTCTTTTGTCTGGACCTGCTGCAGCTATTA
TTCTTGGAATAAACTCAAATCCTGTCTTAGCTAAAGACGCATCATTTAAGCCAAGTTCTGAAAATGGTATTGAGGACAGTGATACTATTGGACTACGCAAAGTGGAGGAT
GGTTCTGGAAGACTTGAAGATGCGGAAAAATATTTTATTTCTGCGATTCAAGAAGCTAAAGAAGGTTTTGGGGAGAGAGATCCTCATGTTGCATCTGCCTTCAACAATCT
GGCAGAACTGTATAGAGTCATGAAAACATTTGACAAAGCAGAGCCCATGTATTTGGAAGCCATCAACATATTGGAGGAATCCTATGGCACTGAAGATATAAGGGGATTAC
ACATAAATATTGTGCAACGGCTTTGTTTTATTGCATGGATGTCACATAACCATCATGGGTTGGCCTAG

mRNA sequence

Show/hide mRNA sequence

TTTCGTCTTCCTTTGAACCTTCCATTATTCCATATCAGTCAAGATACCGCCCGAAGCAAGCAGAGATGTCCACAAGACAAGCAGCTTCAAAATGGTTAAAGAGATTAATC
TTTCGCTCTACAGTACTCCATCGCGCTTCCGAATCTTCCGTGTCTGTCAACGTATCGATCTTGTCCTCCCGCTGCAAAGTGAAATCTTCTTCGTGTAATAACGGCAATGG
ATTTCATGATGGTTATCTCAATGGTTTTCCATGGGTTCTTTTGTCTGGACCTGCTGCAGCTATTATTCTTGGAATAAACTCAAATCCTGTCTTAGCTAAAGACGCATCAT
TTAAGCCAAGTTCTGAAAATGGTATTGAGGACAGTGATACTATTGGACTACGCAAAGTGGAGGATGGTTCTGGAAGACTTGAAGATGCGGAAAAATATTTTATTTCTGCG
ATTCAAGAAGCTAAAGAAGGTTTTGGGGAGAGAGATCCTCATGTTGCATCTGCCTTCAACAATCTGGCAGAACTGTATAGAGTCATGAAAACATTTGACAAAGCAGAGCC
CATGTATTTGGAAGCCATCAACATATTGGAGGAATCCTATGGCACTGAAGATATAAGGGGATTACACATAAATATTGTGCAACGGCTTTGTTTTATTGCATGGATGTCAC
ATAACCATCATGGGTTGGCCTAG

Protein sequence

Show/hide protein sequence

MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDSDTIGLRKVED
GSGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGTEDIRGLHINIVQRLCFIAWMSHNHHGLA

Lsi05G002740 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome